mRNA_P-wetherbeei_contig9952.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig9952.2.1
Unique NamemRNA_P-wetherbeei_contig9952.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig9952.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig9952contigP-wetherbeei_contig9952:799..2265 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size947
Hectar predicted targeting categoryother localisation
Exons3
Cds size666
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187118.602912-UTR-P-wetherbeei_contig9952:798..10781683187118.602912-UTR-P-wetherbeei_contig9952:798..1078Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig9952 799..1078 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187118.6129887-CDS-P-wetherbeei_contig9952:1078..12031683187118.6129887-CDS-P-wetherbeei_contig9952:1078..1203Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig9952 1079..1203 +
1683187118.6226356-CDS-P-wetherbeei_contig9952:1431..15421683187118.6226356-CDS-P-wetherbeei_contig9952:1431..1542Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig9952 1432..1542 +
1683187118.6319635-CDS-P-wetherbeei_contig9952:1835..22651683187118.6319635-CDS-P-wetherbeei_contig9952:1835..2265Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig9952 1836..2265 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig9952.2.1prot_P-wetherbeei_contig9952.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig9952 1079..2265 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig9952.2.1

>prot_P-wetherbeei_contig9952.2.1 ID=prot_P-wetherbeei_contig9952.2.1|Name=mRNA_P-wetherbeei_contig9952.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=222bp
MVNSNLCGVGGCARHRLYNFPGERPRFCSQHKQPGMSDVHNKRCEAENCS
KHVTYGEAGKRARFCSAHKEDGMVDVHCRPCEAPECAKHPHYAFEGDKAR
FCAKHKVSGMIDVKHKKCYAPRCPQPRAYEKPGKKSRFCAVHLAEANRAK
QRRGSTASTGSTGSAAAAVGGGGDSGGGRGGGGEGSGSSGIGAIAASTAV
SRQEFGAVAAAAATLVAARAGP
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mRNA from alignment at P-wetherbeei_contig9952:799..2265+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig9952.2.1 ID=mRNA_P-wetherbeei_contig9952.2.1|Name=mRNA_P-wetherbeei_contig9952.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1467bp|location=Sequence derived from alignment at P-wetherbeei_contig9952:799..2265+ (Phaeothamnion wetherbeei SAG_119_79)
GATTTTCAAAGAGGGCAAAAATGTAAAGAGAGAGGTGTGGAGAAAAGAGA
GGACACCATGCCGTTTCCATGAATCCAATCCGCCACCGAGACCAGAAAAG
GAAGGCGGACGCTATTTAGTGCTGAAGTTCGGGAACCTTCTCACATCTCG
ACTTCACATACAAATTGGCTCTGTGAGCCCTTCACCAAATACCCCATCTG
CGGTAGTGTAACGAAGTTCTCGGAGAACAGGCGCTTTGCCCAAGGGAGGT
GTGGCGTTTGTATTTCTCTCGCCGCCAAAGATGGTGAATTCCAACTTGTG
TGGCGTCGGAGGTTGCGCAAGGCACCGCCTCTACAACTTTCCGGGGGAGC
GTCCTCGCTTCTGCTCCCAGCATAAACAGCCGGGAATGTCTGACGTCCAC
AACAAGTGAGTGGATTGTGCCACAAAGCATGCGTGCTCCCCTCCGGGCAC
CGAGCTTCGCCTGAGTCCTGAGTTGGACGACGGAGATGTCGGTGGGGAAG
GTATTTCATCCCTGGCGCATATCGTAATGTTCTGACACATCATTCTCTGC
AGCACCCTTTCAGCAACCTCAACCAACCAAGGGGTCCATGGAATGATGAC
CTGCAAACCATCTTTACCCACTTCTCGGCGCAGGCGTTGCGAGGCGGAGA
ACTGTTCAAAGCACGTGACTTATGGCGAGGCGGGGAAGCGCGCGCGCTTC
TGCTCGGCGCATAAAGAGGACGGAATGGTGGACGTGCATTGCCGGTAGGG
CAGTTTTGCTGATGGACTGTGTTTGGAAAAACGCCCGCGTCACCGTGTGT
TGCATGTCCTTTGCGGTCGCTTGACTTCGCGGTCGAGGCGGGGCTGCCAT
CACGCATAGTCGTCCTATCGCTCCATCTGCATTCTTTGCTTGGTGATGCG
TTCAAACATGATTATGTTGTCATGTAAGCTCCCTTCCGCGCTCGCAGCGT
TGGCCACGGCGGCAAATGGCAACGAGGGAGGCAGCCATGCAAAGTTGTCC
AATCGGCATATTTTTTCCCTCTTCCTTCCTTCTTTAGGCCCTGCGAGGCG
CCGGAGTGCGCTAAGCACCCCCACTACGCCTTCGAGGGCGACAAGGCCCG
TTTCTGTGCCAAGCACAAAGTGAGCGGAATGATTGACGTTAAGCACAAAA
AGTGCTACGCGCCGAGATGTCCGCAGCCGCGCGCCTACGAAAAGCCCGGA
AAGAAGTCGCGCTTCTGCGCCGTGCATTTGGCAGAGGCGAACCGCGCCAA
GCAGCGGCGCGGCAGCACCGCTAGCACCGGCAGCACCGGTAGCGCCGCTG
CAGCCGTCGGAGGCGGCGGAGATAGCGGCGGCGGCCGGGGCGGCGGCGGC
GAAGGCAGTGGGAGCAGCGGCATCGGTGCCATAGCTGCCTCGACCGCCGT
CTCCCGACAAGAATTTGGCGCCGTAGCCGCCGCCGCGGCTACACTGGTGG
CGGCCAGGGCCGGACCG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig9952:799..2265+

>mRNA_P-wetherbeei_contig9952.2.1 ID=mRNA_P-wetherbeei_contig9952.2.1|Name=mRNA_P-wetherbeei_contig9952.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=666bp|location=Sequence derived from alignment at P-wetherbeei_contig9952:799..2265+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGTGAATTCCAACTTGTGTGGCGTCGGAGGTTGCGCAAGGCACCGCCT
CTACAACTTTCCGGGGGAGCGTCCTCGCTTCTGCTCCCAGCATAAACAGC
CGGGAATGTCTGACGTCCACAACAAGCGTTGCGAGGCGGAGAACTGTTCA
AAGCACGTGACTTATGGCGAGGCGGGGAAGCGCGCGCGCTTCTGCTCGGC
GCATAAAGAGGACGGAATGGTGGACGTGCATTGCCGGCCCTGCGAGGCGC
CGGAGTGCGCTAAGCACCCCCACTACGCCTTCGAGGGCGACAAGGCCCGT
TTCTGTGCCAAGCACAAAGTGAGCGGAATGATTGACGTTAAGCACAAAAA
GTGCTACGCGCCGAGATGTCCGCAGCCGCGCGCCTACGAAAAGCCCGGAA
AGAAGTCGCGCTTCTGCGCCGTGCATTTGGCAGAGGCGAACCGCGCCAAG
CAGCGGCGCGGCAGCACCGCTAGCACCGGCAGCACCGGTAGCGCCGCTGC
AGCCGTCGGAGGCGGCGGAGATAGCGGCGGCGGCCGGGGCGGCGGCGGCG
AAGGCAGTGGGAGCAGCGGCATCGGTGCCATAGCTGCCTCGACCGCCGTC
TCCCGACAAGAATTTGGCGCCGTAGCCGCCGCCGCGGCTACACTGGTGGC
GGCCAGGGCCGGACCG
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