mRNA_P-wetherbeei_contig995.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig995.2.1
Unique NamemRNA_P-wetherbeei_contig995.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig995.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig995contigP-wetherbeei_contig995:2292..5732 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size559
Hectar predicted targeting categoryother localisation
Exons2
Cds size540
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187118.3678617-CDS-P-wetherbeei_contig995:2291..23191683187118.3678617-CDS-P-wetherbeei_contig995:2291..2319Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig995 2292..2319 -
1683187118.3769913-CDS-P-wetherbeei_contig995:5201..57131683187118.3769913-CDS-P-wetherbeei_contig995:5201..5713Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig995 5202..5713 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187118.3862588-UTR-P-wetherbeei_contig995:5713..57321683187118.3862588-UTR-P-wetherbeei_contig995:5713..5732Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig995 5714..5732 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig995.2.1prot_P-wetherbeei_contig995.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig995 2292..5713 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig995.2.1

>prot_P-wetherbeei_contig995.2.1 ID=prot_P-wetherbeei_contig995.2.1|Name=mRNA_P-wetherbeei_contig995.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=180bp
MSHGSQRRRPPLSPAPSTTASPSVSSLFQTASISHSTSDATSISYLQRDL
LKAIKLYERFSSSTTTLPYGEIPPEVLYIPPDCTALDLSAWSFLANDNSL
RLLSLQAHALTLERLDLAGAVAVGDAGLAALSGASPELRTLDISSALAVT
DVGLRNFLQHCPRLTRLEVSGAVLLQQSQR
back to top

mRNA from alignment at P-wetherbeei_contig995:2292..5732-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig995.2.1 ID=mRNA_P-wetherbeei_contig995.2.1|Name=mRNA_P-wetherbeei_contig995.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=3441bp|location=Sequence derived from alignment at P-wetherbeei_contig995:2292..5732- (Phaeothamnion wetherbeei SAG_119_79)
CACTTCTTTCATGTGAGCGATGAGCCATGGCAGCCAGCGGCGCAGGCCAC
CGCTGTCGCCGGCGCCGTCGACGACGGCCTCGCCCTCGGTGTCTTCACTT
TTCCAGACTGCATCGATCAGCCATTCCACAAGCGATGCGACCTCCATATC
CTACCTGCAGAGGGATCTCCTTAAGGCCATCAAACTGTATGAGCGCTTCT
CCAGTAGCACGACGACTCTGCCTTATGGGGAAATCCCTCCAGAAGTGTTG
TATATTCCGCCAGACTGCACGGCGCTCGACCTCAGTGCGTGGTCGTTCCT
GGCGAACGACAACTCCCTGCGATTACTCTCATTACAAGCCCATGCTTTAA
CCCTTGAACGGCTTGACTTGGCTGGCGCGGTCGCCGTCGGCGACGCAGGC
CTCGCCGCACTGAGCGGAGCGTCGCCCGAGCTGCGCACCCTCGACATTTC
GAGCGCGCTCGCCGTCACAGACGTCGGCCTGCGCAACTTTCTGCAGCACT
GCCCGCGCCTGACGCGCCTCGAAGTCAGCGGCTGCGCCCAGCTCTGTGGC
GCTGGGGTCGCCGCCCTCGGCCACGCCTGCCGCGACCTGCGCTCCCTAGT
CCTCGCCGGCTGCCCGGCCGTCCGCGGCTGGGCGCTCGCCGCCGCGTTCC
AGGGCTGCGCGGCGCTGACAGCCGTCGACCTGTCCGCCTCCCGTGCCGGT
GACGCCGAGCTGTCGGCGCTTGGCCGCCACTGCCCGCAGCTGCGCGATCT
GAACGTCGCGCACTGCCCCGCCGTATCTGACATTGGCGTGCGAGCCGTCG
CCGCCGGATGCCGTGGTCTGGAGCGCATCGAGCTGCGCCGCTCGCTGCTG
CCGTTCAAGGTGACTGATGTGGCTCTCTTGAGCCTCGGAGAAGGCTGCCC
GGAGCTGCGTGACCTCGGGCTCGGGAATTGCGACGCCGTCACCGACGTCG
GTGTCGACTGGCTGACGCAGGGCTGCCCGCTGCTGCGGCGGCTGGACCTT
TCGGGCGCTGTCCGCGTTGGCAACGCAGGTGTGGGCAGCCTCGCGCGCTG
CGCGGGCCTTCGCTGGCTGAGCCTCCGCCGGCTCAAGGCCATGACCGATG
TCGGCCTCGCCCACCTCGCCCGAGGCTGCCCGGTCCTCGAAACCGTCGAC
ACTGGAGGGCTATTCCTGCTGACGGACGGCCATCCCGGCAACTTTGCTGT
AACGGGCGTTCAAGCGTTGGCCCGCGGTTGCCGCAACATTCGCTCGATCA
ACTTGGACGGCGTGCCGCGGCTGGCGCTCTACGCGCCGCGGGCGATCGCG
GCGGGGCTGCCAGCGCTGCGGGCGCTGTCGCTGGCGGGATGTCGGGCGTT
GACCGAGGCCGGGGTGATGGCGCTGGCGGCGGGTTTTGCGTCGCGCCGCA
ATGACGACGATGGTGGCAGCGGCAGCGGCGGCGGCAGGAAAAGCAAAGGC
GGCAGCAGTAGCGGCAGCGGTAACAGCATTGGCGGCTTCAGCAACAGCGG
CGGCAGCGCTGCCAGCGGCAGAAGCAACGACAGCCGACTGAAAGACGCGC
GCAAAAGATATGGAGCCGGCACTGGAAGCCGCGGCGCAATCGGGGAAAGC
CCACCAAATCTAGACGTCAGCATCGGCGGCGACGCGAGTACGGACGCTAC
GTCGAGCAGCACCGCTGCCGCTTGGACCGGGCCAGGCCTCACTAGCCTCA
ACCTCGCGCGCTGCGGCGTCGCCGTAACGGACGCAACCGTCGCCGCCCTC
GCGCGCGCCTGCCCCTCCCTGGTGTCGCTCGATGTCTCCGGTGCTGTCTC
CCTCGGCCTCGCCGCCGTCGCCGCCGTCTGCGCGTGCTGCCGCGGGCTCC
ACCATCTGGACCTGTCCTGGACACCCATTGAGGACGCGGCGCTCGCGGCC
TTCGGCCCCGAGAGCGGCGGCGGGCTGCCGGAGCTGCGGGCGGCATCGCT
TGCCGGCTGCGGCAGCGTCACCAGCGCCGGCGTCCAGTGGGTGGTGGAGG
GCGCACCGAAGCTGCACACGCTGAACGTGCTTGGCACGCGCTGCCGGCTC
GAAACCCTTGCCGTGCTCGCCGACCACTGCCCGGACTCCCGGCTCCGGAA
CAGGATAGGCGCCGCCAGTGGCAGAAGCGCTGGCGCCGGCCCCTCTTCTG
CCGCCAGCCAGTCCGCGGCTCCTGCCTCCGCCGCTGACCTCGGCGATTTA
AGCAATGACATCGGCGGCGTCGGCGGCGGCGGCGGCCGGGACTTTCTGGG
GCTCTGGCCCCTGCGAAGGGTGTCGGATCGGATCGCAGTGAGGGAGCACC
ACCGCCGCTACACGGCGGCCGCCCGCGTGCAGGCGGTCTGGCGGGGCCGG
CGGATGCGGCTGGAACGGGAGCGGCGGCGGGCGGCGGCCGCCTGCCTGCA
CCTGGCGCGGACGCTGCAGCACTTTTGGCGGCTCCGACGCGGTCGGACCG
AGCTCTGCCGCCGCAGAGCCGCCGGACGCAACCGCCGGTTGGCGGCCGCC
CTCGTCATCCAGGCGGTGTGGCGGACAGCGCTGGCACGGAGAGAAGTCCG
CCGCCGCCGTTTCGCCCGCGAGCAACGGCGCCGCCACAGCGCTGCATCGG
CCGTGCAGCGCAGCTGGCGGGGCCTGCGCGGGCGGCGACGGGCGGCGGAC
CGCCGCGCCGCCGTGACCGCCGAGAAGCGGCGGCGCGCCGCCGGGGCGCT
GGTGCTGCAGCGATACGCGCGCGGGCGGCTGGCGCGGCGGCGCTGTGACG
ACCTGCACACTGCGGCAGCGCGGCTGGAGGCGCGGCGGCAGCGGGCGGCG
CGCCGCGTGCAGTGCGCGTGGCGAAGCTACAAGGCGCGCCGCCGCGTGGC
GGCGATGCGGGCGGGGCTGGCGGAGCGGCGGCGGCGGCGCGAGGCGGCAG
CGACCGCCATACAGCGCAACGCACGCATCTGGGCAGCGCGGCGGGAAGTG
CGGCGGCGCATCGCCGCACGCCGCCACCGAATCGCTGCGGCAACCACCTT
GCAGCGGCACTGGCGCGGCTACTGGCGGCGCGCGGCCTACGCCACCGTCC
TCGAAAGGCGGCGGCGGGACCATTGGGAGTCCGCCGCGGCGACGCTCCAG
GGCTGCTGGCGGCAGCACAAGGCACGGCGAGCGCGCCGGGAGCTCGTTGC
CGCACGCGCTGAAGAGGCCATCCGCCGCGAGGCCGCCGCGCTGACGCTGC
AGGGGCACTGGCGCGGCTATGCGGCACGGCAAGCGGCGGTCGGCCTGAGG
TGCAGCCACCTGGAGCGCATTGGCGAGCTGGTGCGCGCGGAACGCGCGGC
GGCGACGGCCATCCAGGCAGCGGCGCGCGGCGCGGCCGGGCGGCGGCGAG
CTCGGGCGCGGCGGCGGGAGCGCATGGCACGCTGGAAGGAACTGTGGGAC
GCCGAGCGGCGGCGGCCGTTCTTCTACAACAAAGTCAGCGG
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig995:2292..5732-

>mRNA_P-wetherbeei_contig995.2.1 ID=mRNA_P-wetherbeei_contig995.2.1|Name=mRNA_P-wetherbeei_contig995.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=540bp|location=Sequence derived from alignment at P-wetherbeei_contig995:2292..5732- (Phaeothamnion wetherbeei SAG_119_79)
ATGAGCCATGGCAGCCAGCGGCGCAGGCCACCGCTGTCGCCGGCGCCGTC
GACGACGGCCTCGCCCTCGGTGTCTTCACTTTTCCAGACTGCATCGATCA
GCCATTCCACAAGCGATGCGACCTCCATATCCTACCTGCAGAGGGATCTC
CTTAAGGCCATCAAACTGTATGAGCGCTTCTCCAGTAGCACGACGACTCT
GCCTTATGGGGAAATCCCTCCAGAAGTGTTGTATATTCCGCCAGACTGCA
CGGCGCTCGACCTCAGTGCGTGGTCGTTCCTGGCGAACGACAACTCCCTG
CGATTACTCTCATTACAAGCCCATGCTTTAACCCTTGAACGGCTTGACTT
GGCTGGCGCGGTCGCCGTCGGCGACGCAGGCCTCGCCGCACTGAGCGGAG
CGTCGCCCGAGCTGCGCACCCTCGACATTTCGAGCGCGCTCGCCGTCACA
GACGTCGGCCTGCGCAACTTTCTGCAGCACTGCCCGCGCCTGACGCGCCT
CGAAGTCAGCGGGGCCGTTCTTCTACAACAAAGTCAGCGG
back to top