mRNA_P-wetherbeei_contig9945.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig9945.2.1
Unique NamemRNA_P-wetherbeei_contig9945.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig9945.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig9945contigP-wetherbeei_contig9945:1476..1931 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size456
Hectar predicted targeting categorymitochondrion
Exons1
Cds size420
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187118.2318702-UTR-P-wetherbeei_contig9945:1475..14821683187118.2318702-UTR-P-wetherbeei_contig9945:1475..1482Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig9945 1476..1482 -
1683187118.248938-UTR-P-wetherbeei_contig9945:1902..19311683187118.248938-UTR-P-wetherbeei_contig9945:1902..1931Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig9945 1903..1931 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187118.2405837-CDS-P-wetherbeei_contig9945:1482..19021683187118.2405837-CDS-P-wetherbeei_contig9945:1482..1902Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig9945 1483..1902 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig9945.2.1prot_P-wetherbeei_contig9945.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig9945 1483..1902 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig9945.2.1

>prot_P-wetherbeei_contig9945.2.1 ID=prot_P-wetherbeei_contig9945.2.1|Name=mRNA_P-wetherbeei_contig9945.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=140bp
MVAARYFSRTNGVAVTAFREEPPATHTAGRCTQTATTQAVHLQSTLLPFF
RASRGRCRGKRAGGPTGWLERGPRTRLLVSPVVAAIPVALRHTRGDGDGL
RGSVGRSGGNGSSARCGGGGGCRGNASFSENGSGGSNLC*
back to top

mRNA from alignment at P-wetherbeei_contig9945:1476..1931-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig9945.2.1 ID=mRNA_P-wetherbeei_contig9945.2.1|Name=mRNA_P-wetherbeei_contig9945.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=456bp|location=Sequence derived from alignment at P-wetherbeei_contig9945:1476..1931- (Phaeothamnion wetherbeei SAG_119_79)
GGCGGCGAAAGCCCGTTCAGGCCGCGACGATGGTTGCGGCGCGGTATTTC
AGCCGGACAAATGGCGTGGCGGTAACGGCGTTCCGAGAAGAGCCGCCGGC
GACGCATACGGCCGGTCGATGCACTCAAACGGCGACAACACAGGCCGTGC
ATCTACAATCTACTTTACTGCCATTCTTTCGGGCCAGCCGCGGACGATGT
CGCGGTAAGCGGGCCGGGGGACCGACCGGCTGGCTAGAACGTGGACCCCG
AACTAGGCTTCTTGTTAGCCCAGTAGTTGCAGCCATTCCGGTTGCGCTGC
GGCACACCCGCGGCGACGGTGACGGGCTGCGTGGCAGCGTTGGCCGGAGT
GGCGGGAATGGCAGCTCCGCAAGGTGCGGCGGCGGTGGTGGCTGTAGGGG
GAACGCCAGCTTTAGCGAGAACGGCAGCGGCGGCAGCAACCTCTGTTAAA
GGCAGC
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig9945:1476..1931-

>mRNA_P-wetherbeei_contig9945.2.1 ID=mRNA_P-wetherbeei_contig9945.2.1|Name=mRNA_P-wetherbeei_contig9945.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=420bp|location=Sequence derived from alignment at P-wetherbeei_contig9945:1476..1931- (Phaeothamnion wetherbeei SAG_119_79)
ATGGTTGCGGCGCGGTATTTCAGCCGGACAAATGGCGTGGCGGTAACGGC
GTTCCGAGAAGAGCCGCCGGCGACGCATACGGCCGGTCGATGCACTCAAA
CGGCGACAACACAGGCCGTGCATCTACAATCTACTTTACTGCCATTCTTT
CGGGCCAGCCGCGGACGATGTCGCGGTAAGCGGGCCGGGGGACCGACCGG
CTGGCTAGAACGTGGACCCCGAACTAGGCTTCTTGTTAGCCCAGTAGTTG
CAGCCATTCCGGTTGCGCTGCGGCACACCCGCGGCGACGGTGACGGGCTG
CGTGGCAGCGTTGGCCGGAGTGGCGGGAATGGCAGCTCCGCAAGGTGCGG
CGGCGGTGGTGGCTGTAGGGGGAACGCCAGCTTTAGCGAGAACGGCAGCG
GCGGCAGCAACCTCTGTTAA
back to top