mRNA_P-wetherbeei_contig993.2.2 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig993.2.2
Unique NamemRNA_P-wetherbeei_contig993.2.2
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig993.2.2 vs. uniprot
Match: K0T4V9_THAOC (Sm domain-containing protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0T4V9_THAOC)

HSP 1 Score: 120 bits (302), Expect = 7.810e-34
Identity = 63/92 (68.48%), Postives = 70/92 (76.09%), Query Frame = 1
Query:    1 KRSPSDFLKSCLGRPVVVKLNSGVDYRG-VDGFRCLARLASRHC-------VLACLDGYMNIAMEQAEEYVDGQLKAKYGDCFIRGNNGTSL 252
            KRSPSDFLK+ LGR VVV+LNSG DY+G   G    A + S++        VLACLDGYMNIAMEQ EEYVDGQLK+KYGDCFIRGNNGT L
Sbjct:   10 KRSPSDFLKAVLGRSVVVRLNSGTDYKGGKTGEARAASIDSKYSASPLLLGVLACLDGYMNIAMEQTEEYVDGQLKSKYGDCFIRGNNGTCL 101          
BLAST of mRNA_P-wetherbeei_contig993.2.2 vs. uniprot
Match: A0A7S2UQ42_9STRA (Hypothetical protein n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2UQ42_9STRA)

HSP 1 Score: 118 bits (296), Expect = 6.040e-33
Identity = 60/80 (75.00%), Postives = 61/80 (76.25%), Query Frame = 1
Query:    1 KRSPSDFLKSCLGRPVVVKLNSGVDYRGVDGFRCLARLASRHCVLACLDGYMNIAMEQAEEYVDGQLKAKYGDCFIRGNN 240
            KRSPSDFLKS LGRPV V+LNSG DYRGV               LACLDGYMNIAMEQ EEYVDGQLKAKYGDCFIRGNN
Sbjct:   28 KRSPSDFLKSVLGRPVSVRLNSGTDYRGV---------------LACLDGYMNIAMEQTEEYVDGQLKAKYGDCFIRGNN 92          
BLAST of mRNA_P-wetherbeei_contig993.2.2 vs. uniprot
Match: A0A8J9X496_PHATR (Hypothetical protein (Fragment) n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=A0A8J9X496_PHATR)

HSP 1 Score: 116 bits (290), Expect = 1.780e-32
Identity = 57/80 (71.25%), Postives = 62/80 (77.50%), Query Frame = 1
Query:    1 KRSPSDFLKSCLGRPVVVKLNSGVDYRGVDGFRCLARLASRHCVLACLDGYMNIAMEQAEEYVDGQLKAKYGDCFIRGNN 240
            KRSPSDFLKS LGRPV VKLNSG++YRG+               LACLDGY+NIAMEQ EEYVDGQL+AKYGDCFIRGNN
Sbjct:    2 KRSPSDFLKSVLGRPVQVKLNSGIEYRGI---------------LACLDGYLNIAMEQTEEYVDGQLQAKYGDCFIRGNN 66          
BLAST of mRNA_P-wetherbeei_contig993.2.2 vs. uniprot
Match: A0A7S0KWV0_9STRA (Hypothetical protein n=1 Tax=Asterionellopsis glacialis TaxID=33640 RepID=A0A7S0KWV0_9STRA)

HSP 1 Score: 117 bits (292), Expect = 5.120e-32
Identity = 59/80 (73.75%), Postives = 61/80 (76.25%), Query Frame = 1
Query:    1 KRSPSDFLKSCLGRPVVVKLNSGVDYRGVDGFRCLARLASRHCVLACLDGYMNIAMEQAEEYVDGQLKAKYGDCFIRGNN 240
            KRSPSDFLKS LGRPV V+LNSG +YRGV               LACLDGYMNIAMEQ EEYVDGQLKAKYGDCFIRGNN
Sbjct:   53 KRSPSDFLKSVLGRPVKVRLNSGTEYRGV---------------LACLDGYMNIAMEQTEEYVDGQLKAKYGDCFIRGNN 117          
BLAST of mRNA_P-wetherbeei_contig993.2.2 vs. uniprot
Match: A0A7S0FIP0_9STRA (Hypothetical protein n=1 Tax=Minutocellus polymorphus TaxID=265543 RepID=A0A7S0FIP0_9STRA)

HSP 1 Score: 115 bits (289), Expect = 7.250e-32
Identity = 58/80 (72.50%), Postives = 61/80 (76.25%), Query Frame = 1
Query:    1 KRSPSDFLKSCLGRPVVVKLNSGVDYRGVDGFRCLARLASRHCVLACLDGYMNIAMEQAEEYVDGQLKAKYGDCFIRGNN 240
            KRSPSDFLK+ LGRPV V+LNSG DY+GV               LACLDGYMNIAMEQ EEYVDGQLKAKYGDCFIRGNN
Sbjct:   30 KRSPSDFLKAVLGRPVNVRLNSGTDYKGV---------------LACLDGYMNIAMEQTEEYVDGQLKAKYGDCFIRGNN 94          
BLAST of mRNA_P-wetherbeei_contig993.2.2 vs. uniprot
Match: A0A7K7SXJ6_9TYRA (LSM6 protein (Fragment) n=1 Tax=Sapayoa aenigma TaxID=239371 RepID=A0A7K7SXJ6_9TYRA)

HSP 1 Score: 115 bits (287), Expect = 8.180e-32
Identity = 58/85 (68.24%), Postives = 63/85 (74.12%), Query Frame = 1
Query:    1 KRSPSDFLKSCLGRPVVVKLNSGVDYRGVDGFRCLARLASRHCVLACLDGYMNIAMEQAEEYVDGQLKAKYGDCFIRGNNGTSLL 255
            K++PSDFLK  +GRPVVVKLNSGVDYRGV               LACLDGYMNIA+EQ EEYV+GQLK KYGD FIRGNNG  LL
Sbjct:    5 KQTPSDFLKQIIGRPVVVKLNSGVDYRGV---------------LACLDGYMNIALEQTEEYVNGQLKNKYGDAFIRGNNGKFLL 74          
BLAST of mRNA_P-wetherbeei_contig993.2.2 vs. uniprot
Match: A0A2I0AH25_9ASPA (Putative small nuclear ribonucleoprotein F n=1 Tax=Apostasia shenzhenica TaxID=1088818 RepID=A0A2I0AH25_9ASPA)

HSP 1 Score: 115 bits (289), Expect = 8.390e-32
Identity = 58/82 (70.73%), Postives = 64/82 (78.05%), Query Frame = 1
Query:    4 RSPSDFLKSCLGRPVVVKLNSGVDYRGVDGFRCLARLASRHCVLACLDGYMNIAMEQAEEYVDGQLKAKYGDCFIRGNNGTS 249
            ++P+DFLKS  GRPVVVKLNSGVDYRG      L+      C+LACLDGYMNIAMEQ EEYV+GQLK KYGD FIRGNNG S
Sbjct:   17 KTPADFLKSIRGRPVVVKLNSGVDYRGP-----LSAPFLGFCILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRGNNGRS 93          
BLAST of mRNA_P-wetherbeei_contig993.2.2 vs. uniprot
Match: B8C1P5_THAPS (Sm domain-containing protein (Fragment) n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8C1P5_THAPS)

HSP 1 Score: 114 bits (286), Expect = 9.270e-32
Identity = 57/80 (71.25%), Postives = 61/80 (76.25%), Query Frame = 1
Query:    1 KRSPSDFLKSCLGRPVVVKLNSGVDYRGVDGFRCLARLASRHCVLACLDGYMNIAMEQAEEYVDGQLKAKYGDCFIRGNN 240
            KRSPSDFLK+ LGRPV V+LN+G DYRGV               LACLDGYMNIAMEQ EEYVDGQLK+KYGDCFIRGNN
Sbjct:    2 KRSPSDFLKAVLGRPVNVRLNTGTDYRGV---------------LACLDGYMNIAMEQTEEYVDGQLKSKYGDCFIRGNN 66          
BLAST of mRNA_P-wetherbeei_contig993.2.2 vs. uniprot
Match: G1KCF6_ANOCA (LSM6 homolog, U6 small nuclear RNA and mRNA degradation associated n=1 Tax=Anolis carolinensis TaxID=28377 RepID=G1KCF6_ANOCA)

HSP 1 Score: 115 bits (288), Expect = 1.060e-31
Identity = 58/85 (68.24%), Postives = 63/85 (74.12%), Query Frame = 1
Query:    1 KRSPSDFLKSCLGRPVVVKLNSGVDYRGVDGFRCLARLASRHCVLACLDGYMNIAMEQAEEYVDGQLKAKYGDCFIRGNNGTSLL 255
            K++PSDFLK  +GRPVVVKLNSGVDYRGV               LACLDGYMNIA+EQ EEYV+GQLK KYGD FIRGNNGT  L
Sbjct:    5 KQTPSDFLKQIIGRPVVVKLNSGVDYRGV---------------LACLDGYMNIALEQTEEYVNGQLKNKYGDAFIRGNNGTYTL 74          
BLAST of mRNA_P-wetherbeei_contig993.2.2 vs. uniprot
Match: A0A7S2IZG2_9EUKA (Hypothetical protein n=1 Tax=Haptolina brevifila TaxID=156173 RepID=A0A7S2IZG2_9EUKA)

HSP 1 Score: 115 bits (287), Expect = 1.550e-31
Identity = 59/80 (73.75%), Postives = 61/80 (76.25%), Query Frame = 1
Query:    1 KRSPSDFLKSCLGRPVVVKLNSGVDYRGVDGFRCLARLASRHCVLACLDGYMNIAMEQAEEYVDGQLKAKYGDCFIRGNN 240
            K +PSDFLK+ LGRPVVVKLNSGVDYRGV               LACLDGYMNIAMEQ EEYVDGQLKAKYGD FIRGNN
Sbjct:   30 KSNPSDFLKTVLGRPVVVKLNSGVDYRGV---------------LACLDGYMNIAMEQTEEYVDGQLKAKYGDTFIRGNN 94          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig993.2.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
K0T4V9_THAOC7.810e-3468.48Sm domain-containing protein n=1 Tax=Thalassiosira... [more]
A0A7S2UQ42_9STRA6.040e-3375.00Hypothetical protein n=1 Tax=Attheya septentrional... [more]
A0A8J9X496_PHATR1.780e-3271.25Hypothetical protein (Fragment) n=2 Tax=Phaeodacty... [more]
A0A7S0KWV0_9STRA5.120e-3273.75Hypothetical protein n=1 Tax=Asterionellopsis glac... [more]
A0A7S0FIP0_9STRA7.250e-3272.50Hypothetical protein n=1 Tax=Minutocellus polymorp... [more]
A0A7K7SXJ6_9TYRA8.180e-3268.24LSM6 protein (Fragment) n=1 Tax=Sapayoa aenigma Ta... [more]
A0A2I0AH25_9ASPA8.390e-3270.73Putative small nuclear ribonucleoprotein F n=1 Tax... [more]
B8C1P5_THAPS9.270e-3271.25Sm domain-containing protein (Fragment) n=1 Tax=Th... [more]
G1KCF6_ANOCA1.060e-3168.24LSM6 homolog, U6 small nuclear RNA and mRNA degrad... [more]
A0A7S2IZG2_9EUKA1.550e-3173.75Hypothetical protein n=1 Tax=Haptolina brevifila T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig993contigP-wetherbeei_contig993:2807..3174 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog159749.K0T4V9
PFAMsLSM
Model size258
Max annot lvl2836|Bacillariophyta
KEGG koko:K12625
KEGG Pathwayko03018,ko03040,map03018,map03040
KEGG ModuleM00354,M00396,M00397
Hectar predicted targeting categoryother localisation
Exons2
Evalue1.28e-34
EggNOG OGsCOG1958@1|root,KOG1783@2759|Eukaryota,2XDMK@2836|Bacillariophyta
DescriptionLSM domain
Cds size258
COG categoryA
BRITEko00000,ko00001,ko00002,ko03019,ko03041
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187117.4876995-CDS-P-wetherbeei_contig993:2806..29331683187117.4876995-CDS-P-wetherbeei_contig993:2806..2933Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig993 2807..2933 +
1683187117.497164-CDS-P-wetherbeei_contig993:3043..31741683187117.497164-CDS-P-wetherbeei_contig993:3043..3174Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig993 3044..3174 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig993.2.2prot_P-wetherbeei_contig993.2.2Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig993 2807..3174 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig993.2.2

>prot_P-wetherbeei_contig993.2.2 ID=prot_P-wetherbeei_contig993.2.2|Name=mRNA_P-wetherbeei_contig993.2.2|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=86bp
KRSPSDFLKSCLGRPVVVKLNSGVDYRGVDGFRCLARLASRHCVLACLDG
YMNIAMEQAEEYVDGQLKAKYGDCFIRGNNGTSLL*
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mRNA from alignment at P-wetherbeei_contig993:2807..3174+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig993.2.2 ID=mRNA_P-wetherbeei_contig993.2.2|Name=mRNA_P-wetherbeei_contig993.2.2|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=368bp|location=Sequence derived from alignment at P-wetherbeei_contig993:2807..3174+ (Phaeothamnion wetherbeei SAG_119_79)
AAGCGAAGTCCCAGTGACTTTCTGAAGTCCTGCCTGGGGCGCCCCGTCGT AGTGAAGCTGAACTCGGGCGTGGATTACCGAGGTGTCGATGGATTCCGCT GTTTGGCCCGTTTGGCTTCCAGACATTGTCTCCCCAAGTGCTCGTCCTAG TCTGAGCTTGTTGCAATAAAAGCTGATACAACTGAAACAACTGCATCTTC TTTCGTACCATTGCATACTCTATTTCTGCTTCTGCAGGTGTGCTTGCCTG CCTCGACGGTTATATGAACATTGCAATGGAGCAGGCGGAAGAGTACGTGG ACGGGCAGCTCAAAGCCAAGTACGGCGACTGCTTCATCCGGGGAAACAAC GGTACGTCCTTGTTGTGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig993:2807..3174+

>mRNA_P-wetherbeei_contig993.2.2 ID=mRNA_P-wetherbeei_contig993.2.2|Name=mRNA_P-wetherbeei_contig993.2.2|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=258bp|location=Sequence derived from alignment at P-wetherbeei_contig993:2807..3174+ (Phaeothamnion wetherbeei SAG_119_79)
AAGCGAAGTCCCAGTGACTTTCTGAAGTCCTGCCTGGGGCGCCCCGTCGT
AGTGAAGCTGAACTCGGGCGTGGATTACCGAGGTGTCGATGGATTCCGCT
GTTTGGCCCGTTTGGCTTCCAGACATTGTGTGCTTGCCTGCCTCGACGGT
TATATGAACATTGCAATGGAGCAGGCGGAAGAGTACGTGGACGGGCAGCT
CAAAGCCAAGTACGGCGACTGCTTCATCCGGGGAAACAACGGTACGTCCT
TGTTGTGA
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