mRNA_P-wetherbeei_contig9926.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig9926.1.1
Unique NamemRNA_P-wetherbeei_contig9926.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig9926.1.1 vs. uniprot
Match: A0A6H5KZ36_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZ36_9PHAE)

HSP 1 Score: 95.9 bits (237), Expect = 4.910e-20
Identity = 61/160 (38.12%), Postives = 84/160 (52.50%), Query Frame = 1
Query:    1 YVWGRLRTLSEDTSLGNYRWDSGGKFHY-HDWHFDDGHTPTDAEVLMHVFVCVGDTWLAREAQFRGDRPFAKCHYFENPQSLTGPGAIALQGRIALVRVSPIRAPRPRFGVVVDGMGWPATPGKPNVFHAIALFLKAVENRKAGFLSYGVSLGDVLREVF 477
            YV  RL  LSED  +  + +  GG +    DW  D    PTDA ++M +FVC  D  L R+  +  DRPFA+  + +   S       AL GR  L R   +  P   F VV D   W A PG  NVF AIALF  A++ RK+ +L  G+S+ +++ E+F
Sbjct:  501 YVLSRLSVLSEDDFMSAFDYAGGGGYPAGRDWAAD---LPTDAAIVMKLFVCCSDKLLPRD--WEEDRPFARQFFVDRAPSSQD----ALPGRFFLTRNEVLHPPH--FFVVADQAHWHALPGSTNVFQAIALFFHAIKTRKSSYLGPGISVANIVNEMF 649          
BLAST of mRNA_P-wetherbeei_contig9926.1.1 vs. uniprot
Match: D8LJC2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJC2_ECTSI)

HSP 1 Score: 95.1 bits (235), Expect = 5.510e-20
Identity = 60/160 (37.50%), Postives = 84/160 (52.50%), Query Frame = 1
Query:    1 YVWGRLRTLSEDTSLGNYRWDSGGKFHY-HDWHFDDGHTPTDAEVLMHVFVCVGDTWLAREAQFRGDRPFAKCHYFENPQSLTGPGAIALQGRIALVRVSPIRAPRPRFGVVVDGMGWPATPGKPNVFHAIALFLKAVENRKAGFLSYGVSLGDVLREVF 477
            YV  RL  LSED  +  + +  GG +    DW  D    PTDA ++M +FVC  D  L R+  +  DRPFA+  + +   S       AL GR  L R   +  P   F V+ D   W A PG  NVF AIALF  A++ RK+ +L  G+S+ +++ E+F
Sbjct:  271 YVLSRLSVLSEDDFMSAFDYAGGGGYPAGRDWAAD---LPTDAAIVMKLFVCCSDKLLPRD--WEEDRPFARQFFVDRAPSSQD----ALPGRFFLTRNEVLHPPH--FFVIADQAYWHALPGSTNVFQAIALFFHAIKTRKSSYLGPGISVANIVNEMF 419          
BLAST of mRNA_P-wetherbeei_contig9926.1.1 vs. uniprot
Match: A0A835YPT6_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YPT6_9STRA)

HSP 1 Score: 90.5 bits (223), Expect = 1.010e-18
Identity = 67/173 (38.73%), Postives = 84/173 (48.55%), Query Frame = 1
Query:    1 YVWGRLRTLSEDTSLGNYRWDSGGKFHYHDWHFDDGHTPTDAEVLMHVFVCVGDTWLAREAQFRGD-RPFAKCHYFENPQSLTGPGAIALQGRIALVRVSPIRA-------------PRPRFGVVVDGMGWPATPGKPNVFHAIALFLKAVENRKAGFLSYGVSLGDVLREVF 477
            YV+ RL+ L+ D  LG  RWD GG      W       PTDAE++MHVFVC  +  LAR    R D  PFA   Y E P +   PG    + R+ LVR   +R                P + VV  G  W    G+ NVF AIALFL AV+  K+G+L       +VL +VF
Sbjct:  150 YVYERLQQLAADAQLGGVRWDGGGAHAGAPW---SPALPTDAELVMHVFVCRCNELLARTPAERLDGAPFASRFYDEVPAAALDPGRY--RSRVVLVRTD-VRGGXXXXXXXXXXXXXAPHYQVVAGGEVWTVPAGRLNVFQAIALFLWAVKRFKSGYLGDVNLRHEVLDDVF 316          
BLAST of mRNA_P-wetherbeei_contig9926.1.1 vs. uniprot
Match: L8GF75_ACACA (Uncharacterized protein n=1 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8GF75_ACACA)

HSP 1 Score: 70.1 bits (170), Expect = 3.260e-11
Identity = 43/145 (29.66%), Postives = 73/145 (50.34%), Query Frame = 1
Query:    1 YVWGRLRTLSEDTSLGNYRWDSGGKFHYHDWHFDDGHTPTDAEVLMHVFVCVGDTWLAREAQFRGDRPFAKCHYFENPQSLTGPGAIALQGRIALVRVSPIRAPRPRFGVVVDGMGWPATPGKPNVFHAIALFLKAVENRKAGFL 435
            Y+  R++ L+E   +  +RW+ GG +    W  +    PTD+++L+H+F    D  L  + +   ++PF+  +Y   P+S   P A+    +I    V P     P F V+     W    G+ N+FHAI L++ AV+ R  GF+
Sbjct:  188 YIVQRVKELAEGGCMAAFRWNGGGSWQGKPWTTE---LPTDSQILIHLFCAHMDGLLPADPRADKNKPFSSLYYVLAPKS---PDAVPTAAKIYQSHVHP-----PHFKVLEHQEVWDTFQGRNNLFHAIFLWVFAVQTRLDGFI 321          
BLAST of mRNA_P-wetherbeei_contig9926.1.1 vs. uniprot
Match: A0A1W4X6H8_AGRPL (transmembrane protein 209 isoform X1 n=2 Tax=Agrilus planipennis TaxID=224129 RepID=A0A1W4X6H8_AGRPL)

HSP 1 Score: 62.8 bits (151), Expect = 1.590e-8
Identity = 41/152 (26.97%), Postives = 72/152 (47.37%), Query Frame = 1
Query:    1 YVWGRLRTLSEDTSLGNYRWDSGGKFHYHDWHFDDGHTPTDAEVLMHVFVCVGDTWLAREAQFRGDRPFAKCHYFENPQSLTGPGAIALQGRIALVRVSPIRAPRPRFGVVVDGMGWPATPGKPNVFHAIALFLKAVENRKAGFLSYGVSLG 456
            Y+  R+R L++  S+  ++W+ G  F    W   D   PTDA+++MH+FV   D  L         +PF+  H+ ++ +       + L      +R    + P   + V++    +  + G  N+FH+I LFL  V  ++ G L   V+LG
Sbjct:  384 YLIKRIRDLTKGGSMSEFKWNGGCSFKGKQW---DDSLPTDAQIIMHLFVSYMDAQLIPLPNKPDAKPFSSSHFIKSTER-----TVELTSNTIALREFMTKPPH--YQVIIGDKVYEVSKGYNNLFHSILLFLYYVNAKEDGMLG-SVNLG 524          
BLAST of mRNA_P-wetherbeei_contig9926.1.1 vs. uniprot
Match: A0A4Z2D2M0_SCHJA (Transmembrane protein isoform 2 n=2 Tax=Schistosoma japonicum TaxID=6182 RepID=A0A4Z2D2M0_SCHJA)

HSP 1 Score: 53.9 bits (128), Expect = 1.850e-5
Identity = 42/144 (29.17%), Postives = 64/144 (44.44%), Query Frame = 1
Query:    1 YVWGRLRTLSEDTSLGNYRWDSGGKFHYHDWHFDDGHTPTDAEVLMHVFVCVGDTWLAREAQFRGDRPFAKCHYFENPQSLTGPGAIALQGRIALVRVSPIRAPRPRFGVVVDGMGWPATPGKPNVFHAIALFLKAVENRKAGF 432
            Y+  RLR L+ ++SL  +RWDSG K     W     H P+D+ +L+++F    DT      +    R F++ +    P           Q     V V P     P+F VV++G  +    G+ NV+HAI +F        A F
Sbjct:  410 YLVNRLRELARESSLQEFRWDSGSKSIEWPW---KEHLPSDSIILLNLFATYMDTRTPPHPKCLTGRVFSQLNVVRLPDKPDLKSRHNCQ--FYQVSVQP-----PQFKVVLNGRIYGFVTGQKNVYHAILMFFHYYVTTNAKF 543          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig9926.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
A0A6H5KZ36_9PHAE4.910e-2038.13Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LJC2_ECTSI5.510e-2037.50Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A835YPT6_9STRA1.010e-1838.73Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
L8GF75_ACACA3.260e-1129.66Uncharacterized protein n=1 Tax=Acanthamoeba caste... [more]
A0A1W4X6H8_AGRPL1.590e-826.97transmembrane protein 209 isoform X1 n=2 Tax=Agril... [more]
A0A4Z2D2M0_SCHJA1.850e-529.17Transmembrane protein isoform 2 n=2 Tax=Schistosom... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig9926contigP-wetherbeei_contig9926:46..1249 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog157072.XP_008865638.1
Preferred nameTMEM209
PFAMsCytochromB561_N
Model size477
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
GOsGO:0006810,GO:0006897,GO:0006909,GO:0008150,GO:0016192,GO:0051179,GO:0051234,GO:0098657
Exons3
Evalue7.19e-22
EggNOG OGsKOG4670@1|root,KOG4670@2759|Eukaryota
DescriptionCytochrome B561, N terminal
Cds size477
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187117.2730434-CDS-P-wetherbeei_contig9926:45..1011683187117.2730434-CDS-P-wetherbeei_contig9926:45..101Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig9926 46..101 +
1683187117.2845652-CDS-P-wetherbeei_contig9926:521..5941683187117.2845652-CDS-P-wetherbeei_contig9926:521..594Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig9926 522..594 +
1683187117.292738-CDS-P-wetherbeei_contig9926:901..12491683187117.292738-CDS-P-wetherbeei_contig9926:901..1249Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig9926 902..1249 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig9926.1.1prot_P-wetherbeei_contig9926.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig9926 46..1249 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig9926.1.1

>prot_P-wetherbeei_contig9926.1.1 ID=prot_P-wetherbeei_contig9926.1.1|Name=mRNA_P-wetherbeei_contig9926.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=159bp
YVWGRLRTLSEDTSLGNYRWDSGGKFHYHDWHFDDGHTPTDAEVLMHVFV
CVGDTWLAREAQFRGDRPFAKCHYFENPQSLTGPGAIALQGRIALVRVSP
IRAPRPRFGVVVDGMGWPATPGKPNVFHAIALFLKAVENRKAGFLSYGVS
LGDVLREVF
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mRNA from alignment at P-wetherbeei_contig9926:46..1249+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig9926.1.1 ID=mRNA_P-wetherbeei_contig9926.1.1|Name=mRNA_P-wetherbeei_contig9926.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1204bp|location=Sequence derived from alignment at P-wetherbeei_contig9926:46..1249+ (Phaeothamnion wetherbeei SAG_119_79)
TATGTCTGGGGGCGGCTGCGGACGCTGTCCGAGGACACGTCCCTGGGGAA CTACAGGTGCCTATGTTTGTGTCGTGAGGTAACGTTTAGGAATTAGCGTG TTTATGGAGCCCGCCGTCGCTGCCCCGGCCGCACCTAGCATCGCTGCTGG CGCTATCGCTACCATCGCTGCTGCCTGCCGCCGCTGCCGCCGCCACCGCT GCTGCTGCATGACCACTCAGTGCTGGAATCGCGGGTAGCGCGCCAGGGCC CCTTTATTGCTGCCCATGAGTAGTACCTACTGCCACTGCCACGGCGGCCA GTTGAGAAGCTTCATGCGCGATCTTGCCTCAGTTGCGAAGCTTCATGCGT TATCTGGCCTAAATTGTGAAGTTCCTGCGGACTGACTGCTGTTTGCATAA CCTTCGTCCCCGCTTTTCGTTTTTAACTTTAGTTGGCACATTGCCGCGGG CCTTCCTGTCCTTTCCATCCTTTCAGATGGGACAGCGGAGGGAAATTTCA TTACCACGATTGGCACTTCGATGACGGTCACACGCCCACGGACGCTGAGG TGAGTGAGAATGACGCGCTACACTCGATGGCCCGTCCTTTGGTCGTCGTC GCATCACGCAGGTCCTCGTGGCGGCTGTCTGTTTGGCAGGCTTTGCACCA CAACTTTCATTGATCCGCAACGCCCAAAGGATGGTGGCGTAGCCGGGCAA ATGACTGGCTCCCCTGCGGAGCGCCAGATGCGAGGTCACGCTGCTGCAAT GCCGACAGATCACCTGTCTGCTGCTTGGGCCAAAACAATCTTGACTTCTC GCCCGGTTTAACCGGCTGAAACCGTCTTCACTTCTCCTCGCCCCGCCGGC CCGCAGGTGCTCATGCACGTCTTCGTCTGCGTCGGCGACACGTGGCTCGC CCGCGAGGCGCAGTTCCGCGGGGACCGCCCGTTTGCCAAGTGCCACTACT TCGAGAACCCGCAGTCGCTCACCGGCCCCGGCGCCATCGCGCTGCAGGGC CGGATCGCCCTGGTGCGCGTCAGCCCTATCCGCGCGCCGCGGCCGCGCTT CGGCGTCGTGGTGGATGGCATGGGGTGGCCGGCGACGCCGGGCAAGCCAA ACGTATTCCATGCCATCGCGCTGTTTTTGAAGGCGGTAGAGAACCGCAAG GCGGGCTTTCTGAGCTACGGCGTCTCGCTGGGGGACGTCTTGAGGGAAGT GTTT
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Coding sequence (CDS) from alignment at P-wetherbeei_contig9926:46..1249+

>mRNA_P-wetherbeei_contig9926.1.1 ID=mRNA_P-wetherbeei_contig9926.1.1|Name=mRNA_P-wetherbeei_contig9926.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=477bp|location=Sequence derived from alignment at P-wetherbeei_contig9926:46..1249+ (Phaeothamnion wetherbeei SAG_119_79)
TATGTCTGGGGGCGGCTGCGGACGCTGTCCGAGGACACGTCCCTGGGGAA
CTACAGATGGGACAGCGGAGGGAAATTTCATTACCACGATTGGCACTTCG
ATGACGGTCACACGCCCACGGACGCTGAGGTGCTCATGCACGTCTTCGTC
TGCGTCGGCGACACGTGGCTCGCCCGCGAGGCGCAGTTCCGCGGGGACCG
CCCGTTTGCCAAGTGCCACTACTTCGAGAACCCGCAGTCGCTCACCGGCC
CCGGCGCCATCGCGCTGCAGGGCCGGATCGCCCTGGTGCGCGTCAGCCCT
ATCCGCGCGCCGCGGCCGCGCTTCGGCGTCGTGGTGGATGGCATGGGGTG
GCCGGCGACGCCGGGCAAGCCAAACGTATTCCATGCCATCGCGCTGTTTT
TGAAGGCGGTAGAGAACCGCAAGGCGGGCTTTCTGAGCTACGGCGTCTCG
CTGGGGGACGTCTTGAGGGAAGTGTTT
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