mRNA_P-wetherbeei_contig992.3.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig992.3.1
Unique NamemRNA_P-wetherbeei_contig992.3.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig992.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig992contigP-wetherbeei_contig992:2446..3616 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1171
Hectar predicted targeting categoryother localisation
Exons1
Cds size615
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187116.924623-UTR-P-wetherbeei_contig992:2445..28561683187116.924623-UTR-P-wetherbeei_contig992:2445..2856Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig992 2446..2856 -
1683187116.9509492-UTR-P-wetherbeei_contig992:3471..36161683187116.9509492-UTR-P-wetherbeei_contig992:3471..3616Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig992 3472..3616 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187116.9413583-CDS-P-wetherbeei_contig992:2856..34711683187116.9413583-CDS-P-wetherbeei_contig992:2856..3471Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig992 2857..3471 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig992.3.1prot_P-wetherbeei_contig992.3.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig992 2857..3471 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig992.3.1

>prot_P-wetherbeei_contig992.3.1 ID=prot_P-wetherbeei_contig992.3.1|Name=mRNA_P-wetherbeei_contig992.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=205bp
MEELSVLPATYWILSLDRETLQALLWSVGEYGFRGGSQDHPRAIGGIKAL
WELVHRRRLLCSWAPETGLFNYIIDGKDHVPVLQPELLLSPHADRTVTSA
KSICEMCRDEMFLETVRLGKYSNGWKGNYHQLLVYAFCAGQLAKTKWQWP
PTACQAQYLDAIFNAFQPWHARGTDGMCEYNEVVREAVADFQLALAYDDA
VVRG*
back to top

mRNA from alignment at P-wetherbeei_contig992:2446..3616-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig992.3.1 ID=mRNA_P-wetherbeei_contig992.3.1|Name=mRNA_P-wetherbeei_contig992.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1171bp|location=Sequence derived from alignment at P-wetherbeei_contig992:2446..3616- (Phaeothamnion wetherbeei SAG_119_79)
GGCAACCTCGCGACGCCTCTTCTTTAATCACACGCATATTCCATTCACGA
CTTTGAAAAGCCTGGCGGTAGAGCAAACGCGGAGCTGCTTACGAAAAGCG
CAGCAATTAACTGAGCCACTACAAAAAGCGTGGCGACTACTACACATGGA
AGAGCTCTCCGTGCTCCCGGCAACGTACTGGATCCTCTCTCTCGACCGCG
AAACGCTGCAAGCTCTCCTGTGGAGCGTCGGCGAGTACGGTTTTCGGGGC
GGCAGCCAGGACCACCCACGCGCCATCGGCGGCATCAAGGCGCTCTGGGA
GCTTGTGCACCGGCGTCGCCTTCTTTGTAGCTGGGCGCCAGAGACCGGGC
TCTTCAACTACATTATCGATGGTAAAGACCACGTTCCCGTGCTTCAACCC
GAGCTCTTGCTCTCGCCGCACGCTGACCGAACCGTCACCTCCGCCAAGAG
CATCTGTGAGATGTGCCGCGACGAGATGTTCCTCGAGACCGTGCGCCTCG
GCAAGTACAGCAACGGATGGAAAGGCAATTATCACCAGCTGCTCGTCTAC
GCCTTCTGCGCTGGCCAACTGGCCAAGACCAAGTGGCAGTGGCCGCCGAC
GGCCTGCCAGGCGCAATATCTCGACGCCATCTTCAATGCCTTCCAGCCGT
GGCACGCCCGCGGCACCGACGGGATGTGCGAGTACAACGAGGTCGTTAGG
GAGGCCGTTGCGGACTTCCAACTTGCGCTTGCCTATGACGATGCCGTCGT
CCGCGGGTAGAGCAGCTGCAGTGACGCTTGTGGGCGGCGGCGGCGGCAGC
GGTGGCGACGACGGGCGGCAACGGCGGCGGCGGCGGGTCGGTGGCAACGG
CTGTGACGGTGGCGGCGCCGGCGCGGGGCCGCTCTTGACGGAAAGCGATG
GGTGGGCCCCGGGGTGGATTGGCGGATGTTTGGTGGCACGTGGGCAGTGA
TGGGAGGGTTTCAGCGGCAGAGTTGCGGCACACTGAATGCTGGGGGCGGA
GCGGGAAAGCGATGGTGGGGTTGTACTCGACGGCGATGGTGGCAGAAAAA
TTAAGTTTACGAAGGGTTTGTATTGAGCCAACGAAAGGCGAAGAGGAGGG
AACTTCGACACAAACCTGGATGTACGATGCTTGCACGTGGCTGGCAAACG
CAATGTTAAGGAACGTCTTTG
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig992:2446..3616-

>mRNA_P-wetherbeei_contig992.3.1 ID=mRNA_P-wetherbeei_contig992.3.1|Name=mRNA_P-wetherbeei_contig992.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=615bp|location=Sequence derived from alignment at P-wetherbeei_contig992:2446..3616- (Phaeothamnion wetherbeei SAG_119_79)
ATGGAAGAGCTCTCCGTGCTCCCGGCAACGTACTGGATCCTCTCTCTCGA
CCGCGAAACGCTGCAAGCTCTCCTGTGGAGCGTCGGCGAGTACGGTTTTC
GGGGCGGCAGCCAGGACCACCCACGCGCCATCGGCGGCATCAAGGCGCTC
TGGGAGCTTGTGCACCGGCGTCGCCTTCTTTGTAGCTGGGCGCCAGAGAC
CGGGCTCTTCAACTACATTATCGATGGTAAAGACCACGTTCCCGTGCTTC
AACCCGAGCTCTTGCTCTCGCCGCACGCTGACCGAACCGTCACCTCCGCC
AAGAGCATCTGTGAGATGTGCCGCGACGAGATGTTCCTCGAGACCGTGCG
CCTCGGCAAGTACAGCAACGGATGGAAAGGCAATTATCACCAGCTGCTCG
TCTACGCCTTCTGCGCTGGCCAACTGGCCAAGACCAAGTGGCAGTGGCCG
CCGACGGCCTGCCAGGCGCAATATCTCGACGCCATCTTCAATGCCTTCCA
GCCGTGGCACGCCCGCGGCACCGACGGGATGTGCGAGTACAACGAGGTCG
TTAGGGAGGCCGTTGCGGACTTCCAACTTGCGCTTGCCTATGACGATGCC
GTCGTCCGCGGGTAG
back to top