mRNA_P-wetherbeei_contig990.5.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig990.5.1
Unique NamemRNA_P-wetherbeei_contig990.5.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig990.5.1 vs. uniprot
Match: A0A835ZFM4_9STRA (Heat shock protein 40 like protein/ DnaJ domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZFM4_9STRA)

HSP 1 Score: 241 bits (615), Expect = 8.080e-68
Identity = 142/304 (46.71%), Postives = 189/304 (62.17%), Query Frame = 2
Query: 1283 VNMDDLGGMGRVFGAMLGKLGVPLPTVIAQSTLEMAREICQQDGPTKEADPRIVLLRYGYDYKGSVERQQAIFFLLRVPPEVADGGLILRCRSPNKSRFKLILFDQRGGVRYQEESTKAAGGNA-TAAALQFTPFEVSVLGDVNPLNLRHAEGEDPVPQMFLRLDTFQIIKRKIEPGDHLVGVYGDNFLNKANFVVTAVPIAPDAAPKMQ-EAQSVDAQLAARREELREFKGEWLEAAKRWIAMEERRQQMELGTEEMITKRESAYNAVLSLSQARCLPAAASGNRGATEYSVTQLQATKARAR 2188
            +++ ++G +GRVFGAM GK+G+P+PT IAQ TL  A+EICQ +    E +P ++ L+ G  Y G+V RQQ  FF LRV  EVAD GL LRC S NKSRFKL++FD +GGVRYQEES K++  +  T   L FTPFEV  L D  PL       E+ +P +F RLDTF + +RK+E GDHLV VYGDNFL  A+F ++A  I P AA + Q   +  DA +  +R ELR F+ E+L+A K W+  +ER       T   + +RE+A +A++ LS   C P   S      E SV   +  KAR R
Sbjct:   96 IDLANMGQLGRVFGAMAGKMGIPIPTNIAQETLTKAQEICQLEPGLCEDNPHLLPLKLGVSYSGNVNRQQGAFFFLRVSAEVADMGLALRCASHNKSRFKLVVFDAKGGVRYQEESAKSSRSDKYTTCTLFFTPFEVGSLADRMPL----PNPEEELPPVFNRLDTFHMTRRKLERGDHLVCVYGDNFLRGASFALSAAAIPPAAALEAQGRLREADAAILQQRSELRAFQMEYLQARKLWLETQERLAAHTENTAAAVQEREAAIDALVGLSLDACAPPQRS------ERSVDVQRLMKARER 389          
BLAST of mRNA_P-wetherbeei_contig990.5.1 vs. uniprot
Match: A0A6H5L474_9PHAE (J domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5L474_9PHAE)

HSP 1 Score: 237 bits (604), Expect = 3.660e-66
Identity = 125/272 (45.96%), Postives = 184/272 (67.65%), Query Frame = 2
Query: 1283 VNMDDLGGMGRVFGAMLGKLGVPLPTVIAQSTLEMAREICQQDGPTKEADPRIVLLRYGYDYKGSVERQQAIFFLLRVPPEVADGGLILRCRSPNKSRFKLILFDQRGGVRYQEESTKAAGGNA-TAAALQFTPFEVSVLGDVNPLNLRHAEGEDPVPQMFLRLDTFQIIKRKIEPGDHLVGVYGDNFLNKANFVVTAVPIAPDAAPKMQEAQSVDAQLAARREELREFKGEWLEAAKRWIAMEERRQQMELGTEEMITKRESAYNAVLSLS 2095
            ++M+ +G MGRV GA++GKLGVP+ T IAQS+L  A E+CQ  G   E +PR++ +  G +YKG+VE+QQ++FF++ V  ++A  GL+LRC S NKSRFKL+LFD  G  RYQEES+  +     T  +L F P+EVS + D   +N+   +GE+ VP +F RLD FQ+  R++E GDHLVGVYGDN+L  A+F + A+P++P A  +     SVDAQL ++RE+L+ FK E+LEA  +W A   + +++   T E++  RE  Y+ ++  S
Sbjct:  113 MDMEGIGSMGRVVGALIGKLGVPIQTSIAQSSLSEAYELCQNSG-LNERNPRLLPMECGVEYKGTVEKQQSVFFMIHVTKDMARDGLVLRCTSTNKSRFKLVLFDNAGKARYQEESSSTSNREGFTMCSLFFAPYEVSNVADT--INIAGLKGEE-VPPIFHRLDLFQLTSRQLEEGDHLVGVYGDNWLRAASFSLMAIPLSPRAKEEEASVVSVDAQLVSQREQLKAFKPEYLEAKAKWEATLGKLEELTAHTTELVRAREVVYDQLVGAS 380          
BLAST of mRNA_P-wetherbeei_contig990.5.1 vs. uniprot
Match: A0A7E4W0I8_PANRE (J domain-containing protein n=2 Tax=Panagrellus redivivus TaxID=6233 RepID=A0A7E4W0I8_PANRE)

HSP 1 Score: 166 bits (421), Expect = 1.510e-41
Identity = 98/273 (35.90%), Postives = 163/273 (59.71%), Query Frame = 2
Query: 1283 VNMDDLGGMGRVFGAMLGKLGVPLPTVIAQSTLEMAREICQQDGPTKEADPRIVLLRYGYDYKGSVERQQAIFFLLRVPPEVADGGLILRCRSPNKSRFKLILFDQRGGVRYQEESTKAAGGNATAAALQFTPFEVSVLGDVNPLNLRHAEGEDPVPQMFLRLDTFQIIK-RKIEPGDHLVGVYGDNFLNKANFVVTAVPIAPDAAPKMQEAQSVDAQLAARREELREFKGEWLEAAKRWIAMEERRQQMELGTEEMITKRESAYNAVLSLSQ 2098
            +++ +LG +GR+FGAM  KLGVP+PT I   TL  AR++ +++     AD  + +L  G     S++ Q A F+++ +  E A  G+++RCRS   S+FKL++FD+ GGVR  +ES K  G   T A + F PF  + L +  P+   + E  D  P  F  LD+ Q+     +EP  HL+ V+GDNFL +A   +T VPI P     +   Q ++ +L  R+EE+ EF+ E+++A  +W A +ER ++ +L  +E++ +R++ Y+ ++S S+
Sbjct:   86 LDISELGSVGRIFGAMFSKLGVPIPTAINPKTLGTARDLVEKEF----AD--VPMLYPGQTISDSIKTQDAKFYVIEMREEFAKHGVVIRCRSTANSKFKLVMFDREGGVRVIQESQKKKGN--TLAEIYFVPFTKNNLTEFIPMKF-YMEDRD-TPLTFHYLDSLQVQGGHTLEPRKHLIAVFGDNFLQEAKVKITFVPIGPYTDEIVGTIQELEPKLKKRKEEMSEFQREYMDAKAKWEAAKERLKREDLEIQELLKERDNLYDQLISESE 348          
BLAST of mRNA_P-wetherbeei_contig990.5.1 vs. uniprot
Match: A0A2K6WEX1_ONCVO (J domain-containing protein n=16 Tax=Onchocercidae TaxID=6296 RepID=A0A2K6WEX1_ONCVO)

HSP 1 Score: 157 bits (396), Expect = 3.260e-38
Identity = 96/277 (34.66%), Postives = 154/277 (55.60%), Query Frame = 2
Query: 1283 VNMDDLGGMGRVFGAMLGKLGVPLPTVIAQSTLEMAREICQQDGPTKEADPRIVLLRYGYDYKGSVERQQAIFFLLRVPPEVADGGLILRCRSPNKSRFKLILFDQRGGVRYQEESTKAAGGNATAAALQFTPFEVSVLGDVNPLNLRHAEGEDPVPQMFLRLDTFQII-KRKIEPGDHLVGVYGDNFLNKANFVVTAVPI--APDAAPKMQEAQSVDAQLAARREELREFKGEWLEAAKRWIAMEERRQQMELGTEEMITKRESAYNAVLSLSQAR 2104
            +++ ++GG+GRVFGA+  KLGVP+PT I    L  AR +C+   PT   D +  +L+ G  Y GSV +Q+A FF + +  E    GL++ CRS   S+FKL+LFD+ GGVR  +ES K  G   T A + F PF  + L +  P+     + E P+P  F  LDT ++I    +E  DH + VYGDN++    + +  VP+  +P +   + +  + +  L  ++ E+ +F+ E+ EA K++  + ER +        ++ KR+  Y A+   S AR
Sbjct:   85 IDISEMGGLGRVFGALFSKLGVPIPTQIGPKVLSQARSLCEGT-PT---DAKYTVLKEGIPYDGSVGKQEADFFKITMQSEWERNGLMIICRSMQMSKFKLVLFDKEGGVRIIQESNKRKG--CTVAEIFFVPFNRANLSEFIPMKFYMEDKETPLP--FHLLDTLEVIGAHTLERRDHFLCVYGDNWIKDVRYQLKFVPLNDSPISVECVHDLTTTEETLIKKKSEMSKFQVEYTEAIKKYKEVTERLKNETEEINSLLKKRDHVYEALEKESMAR 353          
BLAST of mRNA_P-wetherbeei_contig990.5.1 vs. uniprot
Match: A0A016S197_9BILA (J domain-containing protein n=5 Tax=Ancylostomatidae TaxID=33278 RepID=A0A016S197_9BILA)

HSP 1 Score: 157 bits (396), Expect = 4.330e-38
Identity = 87/238 (36.55%), Postives = 138/238 (57.98%), Query Frame = 2
Query: 1286 NMDDLGGMGRVFGAMLGKLGVPLPTVIAQSTLEMAREICQQDGPTKEADPRIVLLRYGYDYKGSVERQQAIFFLLRVPPEVADGGLILRCRSPNKSRFKLILFDQRGGVRYQEESTKAAGGNATAAALQFTPFEVSVLGDVNPLNLRHAEGEDPVPQMFLRLDTFQI-IKRKIEPGDHLVGVYGDNFLNKANFVVTAVPIAPDAAPKMQEAQSVDAQLAARREELREFKGEWLEAAKR 1996
            ++ +LGG+GRVFGA+  KLGVP+PT I    L  AR++C+      EA P    +  G     S+ +Q+  F+ + +  E  D G+ + C+S + S+FKL+LFD+ GGVR  +ES K   G  T A + F PF ++ LG+  P+   H E  D  P  F  LDT +  +   ++   H++ VYGDN+LN   + +T +PI+ D+A  ++E   V+  L A++ E+ +F+ E+ EA K+
Sbjct:  104 DVSELGGVGRVFGALFNKLGVPIPTQIVPKVLAQARQLCEGSACDVEARP----IHPGECISASIAKQEGAFYSIEMKEEYRDQGICIVCKSSSSSKFKLVLFDKEGGVRMIQESQKKKSG--TQAEMFFVPFTIANLGEFVPMKF-HMEDRD-TPLTFHYLDTLETQVAHLLDSRKHILCVYGDNWLNSVKYSITFLPISNDSAVHLKEITEVEKDLLAKKTEMAKFQTEYAEAKKK 333          
BLAST of mRNA_P-wetherbeei_contig990.5.1 vs. uniprot
Match: A0A6G0UWT9_9BILA (J domain-containing protein n=1 Tax=Halicephalobus sp. NKZ332 TaxID=2598192 RepID=A0A6G0UWT9_9BILA)

HSP 1 Score: 153 bits (387), Expect = 5.760e-37
Identity = 92/273 (33.70%), Postives = 151/273 (55.31%), Query Frame = 2
Query: 1283 VNMDDLGGMGRVFGAMLGKLGVPLPTVIAQSTLEMAREICQQDGPTKEADPRIVLLRYGYDYKGSVERQQAIFFLLRVPPEVADGGLILRCRSPNKSRFKLILFDQRGGVRYQEESTKAAGGNATAAALQFTPFEVSVLGDVNPLNLRHAEGEDPVPQMFLRLDTFQIIK-RKIEPGDHLVGVYGDNFLNKANFVVTAVPIAPDAAPKMQEAQSVDAQLAARREELREFKGEWLEAAKRWIAMEERRQQMELGTEEMITKRESAYNAVLSLSQ 2098
            +++ +LG +GR FGAM  KLGVP+PT ++   L  ARE       T+     + +L+       +V+ Q A FF++ +  E    G+I+RC+S + S+FKL+LFD+ G VR  EES K    + T A L F PF  + L +  P+     + + P+   FL  D  Q      +E   HLVGVYGDNFL +  F ++ +PIAP +   + +  +++  L  ++E +  F+ E+++  KRW A +ER ++ E    EM+ +R++ Y  ++  S+
Sbjct:   92 IDISELGSVGRFFGAMFSKLGVPIPTTVSPKVLSNARE------HTERQFAGVPILQPAVPVNETVKTQDAKFFVIDMKSEYQTNGIIIRCKSSSGSKFKLVLFDRDGAVRMMEESQKKK--SHTIADLFFVPFTKNNLSEFIPMKFYMEDRDTPISFHFL--DALQAQGGHTLEERKHLVGVYGDNFLQEGKFKISFLPIAPHSTETVSKITTLEPDLLKKKEVMATFQQEYMDLKKRWEAAKERLKKEEAEVTEMLKQRDTIYEELVKESE 354          
BLAST of mRNA_P-wetherbeei_contig990.5.1 vs. uniprot
Match: A0A158Q5P7_DRAME (J domain-containing protein n=1 Tax=Dracunculus medinensis TaxID=318479 RepID=A0A158Q5P7_DRAME)

HSP 1 Score: 152 bits (384), Expect = 1.440e-36
Identity = 91/267 (34.08%), Postives = 153/267 (57.30%), Query Frame = 2
Query: 1286 NMDDLGGMGRVFGAMLGKLGVPLPTVIAQSTLEMAREICQQDGPTKEADPRIVLLRYGYDYKGSVERQQAIFFLLRVPPEVADGGLILRCRSPNKSRFKLILFDQRGGVRYQEESTKAAGGNATAAALQFTPFEVSVLGDVNPLNLRHAEGEDPVPQMFLRLDTFQII-KRKIEPGDHLVGVYGDNFLNKANFVVTAVPIAPDAAPK--MQEAQSVDAQLAARREELREFKGEWLEAAKRWIAMEERRQQMELGTEEMITKRESAYN 2077
            ++ ++G +GRVFGA+  K+GVP+PT I    L  AR +C+   PT   D +  +L+ G  Y GSV +Q+A FF + +  E    GL++ C+SP  S+FKL+LFD+ GGVR  +ES K  G   TAAA+ F PF+ + L +  P+   + E +D  P  F  LDT + +  ++++  DH + VYGDN++    F +  +P+    + K  +Q+   V+  L   ++E+ +F+ E+ EA +++  + ER +        ++ KR+  Y+
Sbjct:   93 DISEIGSVGRVFGALFSKIGVPIPTQIGPKVLTQARSLCEGT-PT---DAKYSVLQEGVQYDGSVAKQEAAFFKITMREEWQKNGLMIMCKSPQMSKFKLVLFDKEGGVRMIQESNKRKG--CTAAAIYFVPFDRANLSEFIPMKF-YMEDKD-TPLSFHLLDTLETVGAQQLDARDHFLCVYGDNWIKDVRFQLRFLPLNDSLSSKNIIQDLTEVERSLLLAKKEMAQFQIEYTEAIRKYKEVNERLKTETETINGLLKKRDQDYD 351          
BLAST of mRNA_P-wetherbeei_contig990.5.1 vs. uniprot
Match: A0A183BS92_GLOPA (J domain-containing protein n=1 Tax=Globodera pallida TaxID=36090 RepID=A0A183BS92_GLOPA)

HSP 1 Score: 149 bits (376), Expect = 5.680e-35
Identity = 93/282 (32.98%), Postives = 151/282 (53.55%), Query Frame = 2
Query: 1283 VNMDDLGGMGRVFGAMLGKLGVPLPTVIAQSTLEMAREICQQDGPTK--EADPRIVLLRYGYDYKGSVERQQAIFFLLRVPPEVADGGLILRCRSPNKSRFKLILFDQRGGVRYQEESTKAAGGNATAAALQFTPFEVSVLGDVNPLN------------LRHAEGEDPVPQMFLRLDTFQIIKRKI---EPGDHLVGVYGDNFLNKANFVVTAVPIAPDAAPKMQEAQSVDAQLAARREELREFKGEWLEAAKRWIAMEERRQQMELGTEEMITKRESAYN 2077
            +++ +LGG+GR FGAM  KLG+P+PT I    L  AR++ + +      +A P    L  G     SV  Q+A F+   + PE    G+++RC+SP  S+FKL+LFDQ G VR+  ES K      T+A L F PF+   L +  P+             LR    +   P  F  LDT +     +   +PG H++ VYGDNFL   N+ +T +P+   A+  +++  +++  LA+++ E++EF+ E+++  ++W A +ER +  E      +  RE AY+
Sbjct:   88 LDISELGGVGRFFGAMFTKLGIPIPTQIGPKVLAQARDLSRTNAANNSHQAKP----LEPGVVVAASVNNQEANFYSFLMTPEFQQHGVLIRCKSPAMSKFKLVLFDQEGAVRHIRESQKKK--KLTSAELFFVPFQRINLSEFIPIRCFEIVFLWIKSKLRFYMEDKDTPLPFHYLDTLETQGANVMELQPGQHILCVYGDNFLRMVNYEITFLPLNSYASSVVEKINALEPVLASKKLEMQEFQKEYMDLKRKWEAAKERLKLEEEEISGCLKTREKAYD 363          
BLAST of mRNA_P-wetherbeei_contig990.5.1 vs. uniprot
Match: A0A024FV35_9STRA (J domain-containing protein n=1 Tax=Albugo candida TaxID=65357 RepID=A0A024FV35_9STRA)

HSP 1 Score: 147 bits (370), Expect = 1.470e-34
Identity = 94/271 (34.69%), Postives = 156/271 (57.56%), Query Frame = 2
Query: 1283 VNMDDLGGMGRVFGAMLGKLGVPLPTVIAQSTLEMAREICQQDGPTKEADPRIVLLRYGYDYKGSVERQQAIFFLLRVPPEVADGGLILRCRSPNKSRFKLILFDQRGGVRYQEESTKAAGGNATAAALQFT-PFEVSVLGDVNPLNLRHAEGEDPVPQMFLRLDTFQIIKR-KIEPGDHLVGVYGDNFLNKANFVVTAVPIAPDAAPKMQEAQSVDAQLAARREELREFKGEWLEAAKRWIAMEERRQQMELGTEEMITKRESAYNAVLS 2089
            V+++ +GG GR+ GA+  K+G+P+PT I+QS L  AR+IC +   T      +  L +G +    V++Q A F+  R+    A+  L+L+CRS +KS+FKL+LFDQ GGVR  +ES K      TAA +  T   E+  L ++ P +L   E E  +P++F +L  F++ +   +E G HL+ VYGDN+L+   + VT V +    +  +++ Q  +  L   +E L   + E+L A K++  +  R ++ +  T+E++ KRE AY   L+
Sbjct:   88 VDVEAMGGFGRMVGALFTKIGLPIPTQISQSVLSSARDICDERSNTSNK-VHVTDLPFGVEKHSKVDKQDAHFY--RIHLAAANESLVLKCRSMSKSKFKLVLFDQSGGVRLVQESVKKT--RYTAADMYLTNSVELMDLNEMWPPHLNGHEQE--LPEVFTKLTFFEVRRTISLEKGPHLICVYGDNWLSAVKYSVTCVKMEMS-SQALRDIQETENTLVREKESLDSLQKEYLAAKKQYEDVVARVEEKQKYTDEVLAKREQAYEEFLA 350          
BLAST of mRNA_P-wetherbeei_contig990.5.1 vs. uniprot
Match: A0A7I4Y9G1_HAECO (J domain-containing protein n=3 Tax=Trichostrongyloidea TaxID=6314 RepID=A0A7I4Y9G1_HAECO)

HSP 1 Score: 146 bits (368), Expect = 1.720e-34
Identity = 81/238 (34.03%), Postives = 129/238 (54.20%), Query Frame = 2
Query: 1286 NMDDLGGMGRVFGAMLGKLGVPLPTVIAQSTLEMAREICQQDGPTKEADPRIVLLRYGYDYKGSVERQQAIFFLLRVPPEVADGGLILRCRSPNKSRFKLILFDQRGGVRYQEESTKAAGGNATAAALQFTPFEVSVLGDVNPLNLRHAEGEDPVPQMFLRLDTFQIIKRKIEPGDHLVGVYGDNFLNKANFVVTAVPIAPDAAPKMQEAQSVDAQLAARREELREFKGEWLEAAKRW 1999
            ++ +LGG+GRVFGA+  KLGVP+PT I    L  AR++C+      EA P    +  G     S+ +Q+  F+ + +  E    G+ + C+S + S+FKL+LFD+ GGVR  EES K      T A + F PF ++ LG+  PL   H E  D              +   ++   H++ VYGDN+LN   + +T +PI+ D+    +E   V+  L A++ E+ +F+ E+ EA K++
Sbjct:   90 DVSELGGVGRVFGALFNKLGVPIPTQIVPKVLAQARQLCEGSACDVEARP----IAPGEIISASIAKQEGAFYSIEMKEEYRQHGICIVCKSSSSSKFKLVLFDKEGGVRMIEESQKKKSAG-TQAEMFFVPFTIANLGEFVPLKF-HMEDRDTXXXXXXXXXLETQVAHLLDTRKHILCVYGDNWLNAVKYTITFMPISGDSMKPFEEIIEVEKTLLAKKTEMAKFQTEYAEAKKKF 321          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig990.5.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835ZFM4_9STRA8.080e-6846.71Heat shock protein 40 like protein/ DnaJ domain-co... [more]
A0A6H5L474_9PHAE3.660e-6645.96J domain-containing protein n=2 Tax=Ectocarpus Tax... [more]
A0A7E4W0I8_PANRE1.510e-4135.90J domain-containing protein n=2 Tax=Panagrellus re... [more]
A0A2K6WEX1_ONCVO3.260e-3834.66J domain-containing protein n=16 Tax=Onchocercidae... [more]
A0A016S197_9BILA4.330e-3836.55J domain-containing protein n=5 Tax=Ancylostomatid... [more]
A0A6G0UWT9_9BILA5.760e-3733.70J domain-containing protein n=1 Tax=Halicephalobus... [more]
A0A158Q5P7_DRAME1.440e-3634.08J domain-containing protein n=1 Tax=Dracunculus me... [more]
A0A183BS92_GLOPA5.680e-3532.98J domain-containing protein n=1 Tax=Globodera pall... [more]
A0A024FV35_9STRA1.470e-3434.69J domain-containing protein n=1 Tax=Albugo candida... [more]
A0A7I4Y9G1_HAECO1.720e-3434.03J domain-containing protein n=3 Tax=Trichostrongyl... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig990contigP-wetherbeei_contig990:4273..8201 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D8LLG4
PFAMsDnaJ
Model size2509
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
GOsGO:0001101,GO:0003674,GO:0005488,GO:0005515,GO:0008092,GO:0008150,GO:0009605,GO:0009606,GO:0009628,GO:0009629,GO:0009630,GO:0009719,GO:0009725,GO:0009737,GO:0009958,GO:0010033,GO:0033993,GO:0042221,GO:0050896,GO:0097305,GO:1901700
Exons5
Evalue1.92e-73
EggNOG OGsCOG0484@1|root,KOG0713@2759|Eukaryota
Descriptionprotein folding
Cds size1008
COG categoryO
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig990.5.1prot_P-wetherbeei_contig990.5.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig990 5561..7988 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187115.922789-UTR-P-wetherbeei_contig990:4272..55601683187115.922789-UTR-P-wetherbeei_contig990:4272..5560Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig990 4273..5560 +
1683187115.9919355-UTR-P-wetherbeei_contig990:7988..82011683187115.9919355-UTR-P-wetherbeei_contig990:7988..8201Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig990 7989..8201 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187115.9331467-CDS-P-wetherbeei_contig990:5560..58931683187115.9331467-CDS-P-wetherbeei_contig990:5560..5893Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig990 5561..5893 +
1683187115.942613-CDS-P-wetherbeei_contig990:6265..64351683187115.942613-CDS-P-wetherbeei_contig990:6265..6435Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig990 6266..6435 +
1683187115.952187-CDS-P-wetherbeei_contig990:6835..69471683187115.952187-CDS-P-wetherbeei_contig990:6835..6947Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig990 6836..6947 +
1683187115.9619195-CDS-P-wetherbeei_contig990:7279..74111683187115.9619195-CDS-P-wetherbeei_contig990:7279..7411Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig990 7280..7411 +
1683187115.9756553-CDS-P-wetherbeei_contig990:7727..79881683187115.9756553-CDS-P-wetherbeei_contig990:7727..7988Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig990 7728..7988 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig990.5.1

>prot_P-wetherbeei_contig990.5.1 ID=prot_P-wetherbeei_contig990.5.1|Name=mRNA_P-wetherbeei_contig990.5.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=336bp
MDDLGGMGRVFGAMLGKLGVPLPTVIAQSTLEMAREICQQDGPTKEADPR
IVLLRYGYDYKGSVERQQAIFFLLRVPPEVADGGLILRCRSPNKSRFKLI
LFDQRGGVRYQEESTKAAGGNATAAALQFTPFEVSVLGDVNPLNLRHAEG
EDPVPQMFLRLDTFQIIKRKIEPGDHLVGVYGDNFLNKANFVVTAVPIAP
DAAPKMQEAQSVDAQLAARREELREFKGEWLEAAKRWIAMEERRQQMELG
TEEMITKRESAYNAVLSLSQARCLPAAASGNRGATEYSVTQLQATKARAR
NGSADAGAGTISGGGSNSPGMLGSFGRMFGGGKIL*
back to top

mRNA from alignment at P-wetherbeei_contig990:4273..8201+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig990.5.1 ID=mRNA_P-wetherbeei_contig990.5.1|Name=mRNA_P-wetherbeei_contig990.5.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=3929bp|location=Sequence derived from alignment at P-wetherbeei_contig990:4273..8201+ (Phaeothamnion wetherbeei SAG_119_79)
AAACGAAAGGAAAAGAATCCCAACTCAACACAATGAAGCAGGCGAAAGAG CCGGCCGAGACCGTGGATCTGTATGCAGTCCTCGAGGTACTGTGATTCGA ATCATCGTTTTATTTCGGGGAATGCGTTCTTGCTCTCTGCTCGGATGCGA TGGGTTACCAAAGAGACGCTACACTGACACCATTCTTGGTATAAAGGCGA CACGAGCACTAGAATAGAAGAAGAGATAAAGGGATTTGGGTGGAGAAGTA CCCTTAACGGCAAAAGCGCCTGGACGCCTTCTCTCGAAACCTTTCCCTTT CTTGACTACGGCATTCGCTCTCATCAGGTGCCCAAGACGGCGACGGAGGA GGAGATCACAAAGTCCTATCGAAAGCTCGCCTTGAAGTACCATCCTGATC GGAACCGCGGCGACGAGGCTGCAGCCGAGAAATTCAAGGAGATTTCCCGA GCCTATGCCATCCTCACGGACCCGAACAAGCGAAGAATATACGACCTCGA GGGTTCTTCCGCCTCACAAACGGACTTCGAATCGGTGAGTGGTCCCCTTT TGTTAACACCCACAGCACGTAAAACTGCCGATTTTTTAGGCCTCTCTAAG GAAACCAAAAAGTCGGACTTCCTGGGGAAATGATCGCCTGGAGAAACCAA GCACGTCGCCGTATTCCTCTCATGAAGGGCTACGAGTTTCATCAACGTGC CAAGTGGTCAATGGCGCCGTGCCACCCTCAAAATGGAGCATTTGCCGCCG ATTTGCAACCGATGGGCGGGGACGAGGAAGATGTATGTTTTCTTCTTTTT CCTTATTAGACTTGTACGCGCTCTTTACACATATGGTCGAAAAAGTGCTC ATTTGGTCAAGGGAGAGAGCAAGTAGAATTGTTTTCCTTTTTGGGCTAGA GAACGCTCCGATTGGCCTAAAGTAATGGAAAAATTAGCTGTTTTGGCCAG TAGGTCTTGATTGAGTTAATGGCTGGTGTGATGGAGGTTGGGGGGACGCA CTCTTAAGTGAAAGTGCTCGCTGTGAGGTAACGGAATCGAATGGTGTACA TGGTTTTCGCAGGGGTCCACTTCCCACCAATTCGAATTTTTCGTATCCGA AACAAAATCGGCAGTTTTGGGGTGGTCACCTTTTTTAAAGCCCCGATGAA ACCACACCCAAATGGAAGAAATTGACCCTGCCGCACACTTCGAAGATCTT TGTCAACACAGGCCTTATCAAAGCTTCCGTCTTGCTTCGTCTCGTCGCGC CGCAATCTCTCTGAAATGGTCGCCCTCTCCAGGTGAACATGGACGACCTG GGCGGCATGGGCCGCGTCTTCGGTGCCATGCTTGGCAAGCTTGGCGTGCC ACTGCCGACCGTCATCGCCCAGTCGACGCTGGAGATGGCGCGCGAGATCT GCCAGCAGGACGGACCCACCAAAGAGGCCGACCCGCGCATCGTTTTGCTT CGGTACGGCTACGATTACAAAGGGTCGGTGGAGCGGCAACAGGCGATCTT CTTCCTGTTGCGGGTGCCGCCGGAGGTCGCCGACGGCGGGCTGATCCTGC GGTGCCGCTCGCCGAATAAGTCCCGCTTCAAGCTGATCCTCTTCGACCAG CGCGGCGGCGTCCGGTACCAGGTCGGTCGGTCCGGCAGTTTCCGTCGGTT GACTTCTTTGTTTCCGTCAGTTACTTTCCGCTACTTCTTCCATTTCTTCT GTTTATGTCCCGATGGTGCACTAGTGGGCGAACGATACACGGGACAATTT GGGGGATGAATTTCTTGTGGTATATTGCGGATGACAAAGCGTTTTTTAGT GGCGGAAGTTTAGTTTTACCGTTCTTAGACGCTGCGTTTTGCAGTCCCGG AATGGACAGTCTAGGAGCCTTGCTTTTGCAATTTGTTGCTATTATTGGCT TCTTTTGCATCCTCAATGCCCTCTGCTGTTCAACCTTGTTGCCTGTGTGT GCATCTATCTGTACTGCTGTGGTGCGGCGCCCCCCGGCGGCAGGAGGAGA GCACAAAGGCGGCAGGCGGCAACGCAACGGCGGCGGCGCTGCAGTTCACT CCGTTCGAGGTGTCCGTGCTCGGAGACGTCAACCCGCTAAACCTGAGGCA TGCCGAGGGGGAGGATCCAGTGCCTCAAATGTTCCTGCGGCTCGACACCT TCCAGATCATCAAGTGAGTCAGTTGTTTGTTTTCTCTTTTTTATCTGAAA GGTTCTTTTCTTGGTTTTATCCGAAAGGTCCTTTTTTCCTTCTTCGAATG GTTTTCTTCCTCCTCCTCCCCCTCCTCCTCGTCGCTTGTTTCGCGATCTG GGTTCCCGCTTTGTTTGGCCTTCAGCGTTTTGTCCATTTTTCCTTTTTTT AGAACGTGTGCAGCCAACCCGACGTCGTTTTAGAGCACCTGCGTGAGCGA CACGGCCTGAAGTTGAAGGCACCACTTCCCATTCCTGTCAATTCCCCGTT TGACTATTTTCTCCTTCTCAGCTCGTGCGCAGCGAGCCTGGTGTTTTCCC AGAGGACATGAAGATTTCAGTTCCCAATTTCTGAACGCTCTCTTCCTCTC CCGCTTTTGCCAGGCGGAAGATAGAACCGGGAGACCACCTTGTGGGGGTG TACGGCGACAACTTTCTCAACAAGGCCAACTTTGTTGTCACCGCCGTGCC CATCGCGCCTGACGCGGCCCCCAAGGTGCGCTAGTGTTCTTCTTTGAAAT TTGAATCCCGTTTTCTGCCGTTTCGGTTCAATATGTTGTTTCGGTCACGT TCAAGCATAGCCAACAGGGAAAGATGTGCAATAGTTAACCGTTCTACAGT GTTCGTGATGGGCGAAAGCATCATGATGCCGACTGGTTCTCTGTCCTGGG CCAGAATGCATGCGCGTCATCATCTGATACATCGTTCATTCCACAACTTC AGGACAAGCTGAATTGACTTGTCTTCCCCTGACAACATCAGCCTTTTTCG TTCTTTGTCGCCTTGTGGATGCATGTCTGTCTGCCCGTCGATCCTAAACA TTCTCAGATGCAAGAGGCGCAAAGCGTGGACGCGCAGCTGGCGGCGCGGC GGGAGGAGCTGAGGGAGTTCAAGGGCGAGTGGCTCGAGGCCGCCAAGCGC TGGATAGCCATGGAGGAGCGGCGCCAGCAAATGGAACTGGTGAGTGGTCG AACCAGTCGAGTCAGTCGAGTCATCGGAAAATCCGCGCGGGCGAGAGAGA TCTGTGGCGGCGGCAGCGGCGGAAAGATCAGCTTGCTTGTGGGATGTGGC TGACGGTTTTAAAATGGTCTACTGTGATGAAACGCGGAAAACTCCAGTCC TCTGTGGCGAGGTAGGCCTCTGTGGCGAGGTAGGAAGGCAATGTCTCAGT CCTCTTCACTGGGTGGCCTGCTGAGGCGCGGTCCTCTCGCGGTTTGGTTA ACCTTTTCCTCCTCCGCGCGACGCTGCGTGCCTCTTTTCTTTTTGCGCGC CGCAGGGGACGGAGGAAATGATAACCAAGCGGGAATCGGCATACAACGCG GTGCTCTCGCTGTCGCAGGCCAGGTGCCTGCCGGCCGCCGCCAGCGGGAA CCGCGGCGCGACCGAATACAGCGTCACGCAGCTGCAGGCGACCAAGGCGA GGGCCCGGAATGGCAGCGCTGACGCCGGTGCCGGCACCATCAGCGGCGGC GGCAGCAACAGCCCCGGGATGCTCGGGAGCTTCGGGCGCATGTTCGGCGG CGGGAAAATACTGTAGAAGTGTTTGTGGATGATGGGCAAGGGGAGAAGTA TCGGCGACAACAAGCGGCGAGGCGGCGCATTGGATGCATGGTTTTTCAGC CGGTGGTGCTGAGCGTCGAACCAATCTGCTTCGGCGGATGGATACGTCGG AAGTCCGAAGCTTTTTCCGGGTGAACACAACAAAGGGCGGGGGGCGGATG CCGAGACAGCGGTGCGTGGTAAACGTCGG
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig990:4273..8201+

>mRNA_P-wetherbeei_contig990.5.1 ID=mRNA_P-wetherbeei_contig990.5.1|Name=mRNA_P-wetherbeei_contig990.5.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1008bp|location=Sequence derived from alignment at P-wetherbeei_contig990:4273..8201+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGACGACCTGGGCGGCATGGGCCGCGTCTTCGGTGCCATGCTTGGCAA
GCTTGGCGTGCCACTGCCGACCGTCATCGCCCAGTCGACGCTGGAGATGG
CGCGCGAGATCTGCCAGCAGGACGGACCCACCAAAGAGGCCGACCCGCGC
ATCGTTTTGCTTCGGTACGGCTACGATTACAAAGGGTCGGTGGAGCGGCA
ACAGGCGATCTTCTTCCTGTTGCGGGTGCCGCCGGAGGTCGCCGACGGCG
GGCTGATCCTGCGGTGCCGCTCGCCGAATAAGTCCCGCTTCAAGCTGATC
CTCTTCGACCAGCGCGGCGGCGTCCGGTACCAGGAGGAGAGCACAAAGGC
GGCAGGCGGCAACGCAACGGCGGCGGCGCTGCAGTTCACTCCGTTCGAGG
TGTCCGTGCTCGGAGACGTCAACCCGCTAAACCTGAGGCATGCCGAGGGG
GAGGATCCAGTGCCTCAAATGTTCCTGCGGCTCGACACCTTCCAGATCAT
CAAGCGGAAGATAGAACCGGGAGACCACCTTGTGGGGGTGTACGGCGACA
ACTTTCTCAACAAGGCCAACTTTGTTGTCACCGCCGTGCCCATCGCGCCT
GACGCGGCCCCCAAGATGCAAGAGGCGCAAAGCGTGGACGCGCAGCTGGC
GGCGCGGCGGGAGGAGCTGAGGGAGTTCAAGGGCGAGTGGCTCGAGGCCG
CCAAGCGCTGGATAGCCATGGAGGAGCGGCGCCAGCAAATGGAACTGGGG
ACGGAGGAAATGATAACCAAGCGGGAATCGGCATACAACGCGGTGCTCTC
GCTGTCGCAGGCCAGGTGCCTGCCGGCCGCCGCCAGCGGGAACCGCGGCG
CGACCGAATACAGCGTCACGCAGCTGCAGGCGACCAAGGCGAGGGCCCGG
AATGGCAGCGCTGACGCCGGTGCCGGCACCATCAGCGGCGGCGGCAGCAA
CAGCCCCGGGATGCTCGGGAGCTTCGGGCGCATGTTCGGCGGCGGGAAAA
TACTGTAG
back to top