mRNA_P-wetherbeei_contig99.5.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig99.5.1
Unique NamemRNA_P-wetherbeei_contig99.5.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig99.5.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig99contigP-wetherbeei_contig99:7251..10851 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size2098
Hectar predicted targeting categorysignal peptide
Exons7
Cds size1536
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig99.5.1prot_P-wetherbeei_contig99.5.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig99 7766..10804 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187115.6269958-UTR-P-wetherbeei_contig99:7250..77651683187115.6269958-UTR-P-wetherbeei_contig99:7250..7765Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig99 7251..7765 -
1683187115.7215989-UTR-P-wetherbeei_contig99:10804..108511683187115.7215989-UTR-P-wetherbeei_contig99:10804..10851Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig99 10805..10851 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187115.638799-CDS-P-wetherbeei_contig99:7765..81421683187115.638799-CDS-P-wetherbeei_contig99:7765..8142Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig99 7766..8142 -
1683187115.6494236-CDS-P-wetherbeei_contig99:8426..85801683187115.6494236-CDS-P-wetherbeei_contig99:8426..8580Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig99 8427..8580 -
1683187115.6600678-CDS-P-wetherbeei_contig99:8866..92051683187115.6600678-CDS-P-wetherbeei_contig99:8866..9205Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig99 8867..9205 -
1683187115.6702979-CDS-P-wetherbeei_contig99:9473..95421683187115.6702979-CDS-P-wetherbeei_contig99:9473..9542Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig99 9474..9542 -
1683187115.6804676-CDS-P-wetherbeei_contig99:9803..100151683187115.6804676-CDS-P-wetherbeei_contig99:9803..10015Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig99 9804..10015 -
1683187115.6902244-CDS-P-wetherbeei_contig99:10208..104851683187115.6902244-CDS-P-wetherbeei_contig99:10208..10485Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig99 10209..10485 -
1683187115.704695-CDS-P-wetherbeei_contig99:10696..108041683187115.704695-CDS-P-wetherbeei_contig99:10696..10804Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig99 10697..10804 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig99.5.1

>prot_P-wetherbeei_contig99.5.1 ID=prot_P-wetherbeei_contig99.5.1|Name=mRNA_P-wetherbeei_contig99.5.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=512bp
MKGFVCAVALAALGRAAANSGHCKGLLSEVKFYANKNDDNMLTSLTAGHD
RPMCDEDTKFRLPFTAAETVTSISFNLEFGYGVHGGPKEQGWSYEDYVSG
SVGMEAGSAGSTSSVKLSTDFSGPQFTSGSVIKVTVEWEGTLAAGETATI
IFKMRTACQEGVCENDEAGDLTNPDSTVLAVFIGATSGGGDITCDGKQKI
PAMLMCCGGGGGDPHIWGYSGAGFYFDGLPGNRYAFVHDRDVSINIAVAA
RYSDGSEPYTDIVSAGIVLRNTAPGVDRKIAVVHAVEACNEGFSAACTLP
AHGAVVLLDGKMLPLGMADEGDIQVAVAEMPHFCKIDPDALDRDYAMMDE
MTGDAQAGRSLRGAGPAIVAKKAFDFKAWLDTGRILGVPSEANGFVDECE
EWLATRDAFAPHMNGELTTVMIRTATVTFRIEHWSFLDADEHLPADGAAV
VASVPLMLNIYPQQGWRPSRTAHGLLGQTVRPVMPGQAIMEGDEEDYRVD
SLFATNFKFYP*
back to top

mRNA from alignment at P-wetherbeei_contig99:7251..10851-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig99.5.1 ID=mRNA_P-wetherbeei_contig99.5.1|Name=mRNA_P-wetherbeei_contig99.5.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=3601bp|location=Sequence derived from alignment at P-wetherbeei_contig99:7251..10851- (Phaeothamnion wetherbeei SAG_119_79)
AGCACACGGATCCAATCACTTTATATTGCGCTACACGGGAGAGAAACATG
AAGGGCTTCGTGTGCGCGGTCGCTCTGGCGGCTTTGGGCCGTGCTGCAGC
GAACAGCGGTCACTGCAAGGGATTGTTGAGCGAAGTAAAGTTTTACGCCA
ACAAGGTGAGTTCTTACCATCTCCATCATGCTCTCTTTCTACTTGAGCAG
CCACGGCTCCCACGATTTCCTCCGCTGCCGTTTTCCTGGACAGTCTGTCG
CGCCATCGCTCAATCCCCGCGATCCTTCTTTTCTTCCCGCAACTCCGCTC
TATAAAATGAATGGAGCATGAACCGCTCTCATTCCTGCCACCTCATCCAC
AACGCCGCTCCTTCAGAACGATGACAACATGTTGACGAGCCTGACGGCGG
GCCATGACCGACCAATGTGCGATGAAGACACCAAGTTCCGCCTGCCCTTT
ACCGCCGCGGAGACCGTCACGTCGATCTCGTTCAACCTCGAATTCGGATA
TGGAGTGCACGGCGGGCCGAAGGAACAGGGATGGAGCTATGAGGACTATG
TTTCCGGAAGTGTCGGCATGGAGGCTGGCTCCGCAGGAAGCACGTCGTCG
GTGAAGCTCTCCACCGACTTCTCCGGGCCTCAGTTTACTTCAGGTGTGTT
GAAACGGGGAACCACTCCAACATTGTTGCCACGGCATCAGCTTGTCTTGA
CCCACCTCCTTTTTCAAGATTATAACCACGTCGCCATAACCCCCCCGCAA
CGGTACGCAATTCCGTCGCCTCTGACTCGCCGCCGTCCTGTCCCGCTGTC
TGCCTCTCCCATCTTCCACGAAAACCCGAACTGCAGGCTCCGTCATCAAG
GTGACCGTCGAATGGGAGGGAACCCTCGCCGCCGGTGAGACCGCCACGAT
CATTTTTAAAATGAGAACTGCGTGCCAGGAGGGCGTGTGCGAAAACGATG
AAGCCGGCGACCTCACGAACCCCGACTCCACGGTCCTGGCCGTGTTCATC
GGTGCCACCAGCGGCGGCGGTGACATCACGTGCGACGGCAAGCAGAAGGT
ACGCTTGCTTTATGCGTCTTAGCGGCCCCTTTTGCGGTTAGAGCTGCTCC
AGCTGCTGGCTGGTTTGCTTGTGTTCTGGCTCTTTTTGCAGGTGATTTGA
GTGAGCACGTGATCATTCGCTGCTCTCCGTGTGAACGGGACGCCGCGCAG
CCTTTGCGCCATCACTGTCAGTCTCTTAGCCCTCAAAGCCCCCCGATCTC
TCTTCCGTCTCTTCTATGATGTTCTCCGCTTTCTCCACTTGACCTCTCCA
CCCCTGCAGATCCCCGCCATGCTTATGTGCTGCGGAGGCGGTGGCGGAGA
CCCTCATATCTGGGGGTATTCGGGCGCGGTAAGCTGACATTGATGGCTTC
TTGGCATAAAATTCGTGGTTTCATTGGCCGAAAGCCACACCGCTTCATGC
ATGAATTGTTGCCCTTGCTAATTGGACTTACCGAGCAAACGCTGTCGTGT
CAAAGAGGCGTGCTTCGTTGCGCTTGCCACGATTCTGGAGCGTGTATCGT
TGCGTTTTCCTTCAAACCTGAAGATACCTTACTCCTCTGTTTCTCTCTTC
ACAATCCGTACACTTCTTTCTGCCTTGGTGTATGTATCGCTCGCAGGGCT
TTTACTTTGACGGTCTGCCGGGCAATAGGTATGCGTTCGTTCACGATAGG
GACGTGAGCATTAACATCGCCGTCGCCGCCCGGTATTCCGATGGCAGCGA
ACCCTACACAGATATCGTCAGCGCGGGAATAGTTCTCCGCAACACAGCGC
CCGGCGTCGACCGCAAGATCGCTGTTGTCCATGCCGTGGAGGCATGTAAC
GAAGGCTTTTCTGCCGCCTGCACGCTGCCCGCCCATGGTGCTGTTGTTCT
GCTCGATGGCAAGATGCTGCCGCTGGGCATGGCGGACGAGGGTGACATCC
AAGTTGCCGTCGCCGAGATGCCGCACTTCTGCAAGGTCAGTCTATGAGAC
TCGATTGGTCGTAGCCGAATTCGTTCCTTCTTTTCTCTTTGCCATAAATT
AGATCGATCTCGCTTCATGTTGGTCGCAGCCGAAGTCCTTCTTTTTTCTT
TGCCATTACATCTCGCTTCATGGACGCGGCGGTAGCGCGCGTTTCCCGTT
TTCAAGCGATGTAGCCATATTTAATTCTTACAAATATTCTTCTTCCCGTG
TCCGCTCACCTCCCGTTGAACCATCTCGCCCATTCTGTTTCCTTCCCGAT
TCCGAAACGCGAGCAAAACAGATCGACCCGGACGCACTAGACCGCGACTA
CGCCATGATGGACGAGATGACGGGCGACGCCCAGGCGGGCCGCAGCCTCC
GCGGCGCCGGTCCCGCCATTGTCGCCAAGAAGGCATTTGACTTCAAGGCC
TGGCTCGACACTGGCCGCATCCTCGGTAAGGAACGCAAGACAGAGCAAAG
CCTTTCCCCTAGTTACCTGGTAGTAGAGGTGTTTGTAATGGTAACGGTGT
TGCGCAACCTTTCTGTGTTCTCATCAGTGGCCAGCGCTTGGTCATACCGA
GGAACTACAGCTAATGAAGAGTAGCACGGTCTTGAACGGCAGGCAATTTT
GTTCCAGCCTCTTTCTTGCGCAAGCAACCCTTTCAGCACTCCTAACCGTC
CTCCGGCATCTTGCTCGTCGCTGCCAACCGCCGTTAACCGCCACCACAAC
CACAACCAGGCGTGCCGTCGGAGGCAAATGGCTTCGTGGACGAGTGTGAG
GAGTGGCTGGCCACTCGCGACGCCTTCGCGCCTCACATGAACGGAGAGCT
CACGACGGTCATGATCCGGACAGCCACAGTCACCTTCCGGATCGAGCACT
GGTCCTTCCTCGATGCCGACGAGCACTTGCCCGCGGATGGCGCCGCCGTC
GTCGCCTCGGTGCCGCTGATGCTCAACATCTACCCGCAGCAGGGCTGGCG
TCCGTCGCGGACGGCGCACGGACTCCTGGGGCAGACGGTACGTCCGGTCA
TGCCCGGGCAGGCCATCATGGAGGGCGACGAGGAGGACTACCGTGTGGAC
AGCCTCTTCGCCACCAACTTTAAGTTCTACCCGTGAAAAGAAGAAGGATG
AGAAAACGGGAAAAGAAAGCAGAAATTGGAGAGAAGAGAAACGATGAATA
TGAGCTCTCTTCATTCACCTTCCTTTTTAAAGTAGATGGCGGAGGTCCGC
GTCGGGCGCTCGCGCGGACCGTCTGCTGCTTGTGCAATAGGTCTGAGTGG
GGCGGGTTGCTGGTTAGGCGGCGGCGGCAGCTGCGAAACGGCCGTTCCTG
TGACTGCCCAGACACTATGTGGTCATTTTAGCTTTGATGCTCGTTTATGA
CATGTGTTGGTGTAGCAACGACCGGGGTTCTGAGGTGGCCTTAGAAAACC
CTTACAAAAACAAAAAGCGTGAACGGTGCATTGTCTTCGTGATTGCACGG
GGCGGCAAACGGCCGGGCGCAACCGCCAACAGGGAATTCCGAGTACCGGG
GATGGTTGTGGGGAAAGGAAGGTCTATCCAAGGAGCGGCAGCCACTGAGC
CGAGAGAGATCCGTAGTGCAGAGAGTAATTAACCCAACCGTCAGACTTCC
T
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig99:7251..10851-

>mRNA_P-wetherbeei_contig99.5.1 ID=mRNA_P-wetherbeei_contig99.5.1|Name=mRNA_P-wetherbeei_contig99.5.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1536bp|location=Sequence derived from alignment at P-wetherbeei_contig99:7251..10851- (Phaeothamnion wetherbeei SAG_119_79)
ATGAAGGGCTTCGTGTGCGCGGTCGCTCTGGCGGCTTTGGGCCGTGCTGC
AGCGAACAGCGGTCACTGCAAGGGATTGTTGAGCGAAGTAAAGTTTTACG
CCAACAAGAACGATGACAACATGTTGACGAGCCTGACGGCGGGCCATGAC
CGACCAATGTGCGATGAAGACACCAAGTTCCGCCTGCCCTTTACCGCCGC
GGAGACCGTCACGTCGATCTCGTTCAACCTCGAATTCGGATATGGAGTGC
ACGGCGGGCCGAAGGAACAGGGATGGAGCTATGAGGACTATGTTTCCGGA
AGTGTCGGCATGGAGGCTGGCTCCGCAGGAAGCACGTCGTCGGTGAAGCT
CTCCACCGACTTCTCCGGGCCTCAGTTTACTTCAGGCTCCGTCATCAAGG
TGACCGTCGAATGGGAGGGAACCCTCGCCGCCGGTGAGACCGCCACGATC
ATTTTTAAAATGAGAACTGCGTGCCAGGAGGGCGTGTGCGAAAACGATGA
AGCCGGCGACCTCACGAACCCCGACTCCACGGTCCTGGCCGTGTTCATCG
GTGCCACCAGCGGCGGCGGTGACATCACGTGCGACGGCAAGCAGAAGATC
CCCGCCATGCTTATGTGCTGCGGAGGCGGTGGCGGAGACCCTCATATCTG
GGGGTATTCGGGCGCGGGCTTTTACTTTGACGGTCTGCCGGGCAATAGGT
ATGCGTTCGTTCACGATAGGGACGTGAGCATTAACATCGCCGTCGCCGCC
CGGTATTCCGATGGCAGCGAACCCTACACAGATATCGTCAGCGCGGGAAT
AGTTCTCCGCAACACAGCGCCCGGCGTCGACCGCAAGATCGCTGTTGTCC
ATGCCGTGGAGGCATGTAACGAAGGCTTTTCTGCCGCCTGCACGCTGCCC
GCCCATGGTGCTGTTGTTCTGCTCGATGGCAAGATGCTGCCGCTGGGCAT
GGCGGACGAGGGTGACATCCAAGTTGCCGTCGCCGAGATGCCGCACTTCT
GCAAGATCGACCCGGACGCACTAGACCGCGACTACGCCATGATGGACGAG
ATGACGGGCGACGCCCAGGCGGGCCGCAGCCTCCGCGGCGCCGGTCCCGC
CATTGTCGCCAAGAAGGCATTTGACTTCAAGGCCTGGCTCGACACTGGCC
GCATCCTCGGCGTGCCGTCGGAGGCAAATGGCTTCGTGGACGAGTGTGAG
GAGTGGCTGGCCACTCGCGACGCCTTCGCGCCTCACATGAACGGAGAGCT
CACGACGGTCATGATCCGGACAGCCACAGTCACCTTCCGGATCGAGCACT
GGTCCTTCCTCGATGCCGACGAGCACTTGCCCGCGGATGGCGCCGCCGTC
GTCGCCTCGGTGCCGCTGATGCTCAACATCTACCCGCAGCAGGGCTGGCG
TCCGTCGCGGACGGCGCACGGACTCCTGGGGCAGACGGTACGTCCGGTCA
TGCCCGGGCAGGCCATCATGGAGGGCGACGAGGAGGACTACCGTGTGGAC
AGCCTCTTCGCCACCAACTTTAAGTTCTACCCGTGA
back to top