mRNA_P-wetherbeei_contig9899.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig9899.1.1
Unique NamemRNA_P-wetherbeei_contig9899.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig9899.1.1 vs. uniprot
Match: D8LQ47_ECTSI (APPLE domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQ47_ECTSI)

HSP 1 Score: 92.0 bits (227), Expect = 6.420e-20
Identity = 53/93 (56.99%), Postives = 61/93 (65.59%), Query Frame = 1
Query:    1 LVVGGTDGSGTRGVVALLQRLGVPMVIEDYGTLDVH-ASYMVKGGWPEAVRPVLQLTHSPQYAVCDVEAPVREATLRAV---KVLAEKMRASS 267
            L+VGG+DGSGTRGVVALLQRL VPMV+ED GT+DVH A YMVKGGWP  VRPV+       Y      A +R  T  A+   KV  +KM   S
Sbjct:   26 LIVGGSDGSGTRGVVALLQRLKVPMVVEDRGTMDVHGAPYMVKGGWPAVVRPVIGWAKGAGYESRGAPAQLRRKTFDALGGLKVQMQKMAGKS 118          
BLAST of mRNA_P-wetherbeei_contig9899.1.1 vs. uniprot
Match: A0A6H5L0U6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0U6_9PHAE)

HSP 1 Score: 85.1 bits (209), Expect = 6.420e-18
Identity = 47/86 (54.65%), Postives = 56/86 (65.12%), Query Frame = 1
Query:    1 LVVGGTDGSGTRGVVALLQRLGVPMVIEDYGTLDVH-ASYMVKGGWPEAVRPVLQLTHSPQYAVCDVEAPVREATLRAVKVLAEKM 255
            L+VGG+DGSGTRGVVALLQ+L VPMV+ED GT+DVH A YM KGGWP  V PV+       Y      A +R  T  A+  L  +M
Sbjct:   26 LIVGGSDGSGTRGVVALLQQLKVPMVVEDRGTMDVHGAPYMDKGGWPAVVSPVIGWAKGTGYESRSAPAQLRRKTFDALGGLKAQM 111          
BLAST of mRNA_P-wetherbeei_contig9899.1.1 vs. uniprot
Match: A0A482SCK3_9ARCH (APPLE domain-containing protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SCK3_9ARCH)

HSP 1 Score: 75.5 bits (184), Expect = 5.560e-14
Identity = 42/89 (47.19%), Postives = 56/89 (62.92%), Query Frame = 1
Query:    1 LVVGGTDGSGTRGVVALLQRLGVPMVIEDYGTLDVHASYMVKGGWPEAVRPVLQLTHSPQYAVCDVEAPVREATLRAVKVLAEKMRASS 267
            L+VGGTDGSGTR VV +L  LGV MV ED  T D+HA  +   GWP  V+PVL+ TH+  Y   D+   V + T+ AV+ + E+ +  S
Sbjct:  127 LIVGGTDGSGTRRVVQVLTDLGVTMVSEDPETYDIHADLV--SGWPPVVKPVLKHTHTLNYKPEDLPKHVNQQTIAAVRKITEQAQKDS 213          
BLAST of mRNA_P-wetherbeei_contig9899.1.1 vs. uniprot
Match: A0A7S2TNP4_9EUKA (Hypothetical protein n=1 Tax=Lotharella oceanica TaxID=641309 RepID=A0A7S2TNP4_9EUKA)

HSP 1 Score: 72.4 bits (176), Expect = 6.730e-13
Identity = 41/86 (47.67%), Postives = 51/86 (59.30%), Query Frame = 1
Query:    1 LVVGGTDGSGTRGVVALLQRLGVPMVIEDYGTLDVHASYMVKGGWPEAVRPVLQLTHSPQYAVCDVEAPVREATLRAVKVLAEKMR 258
            ++VGGTDGSGTR VV LL  L V MV +D  T DVHA  M  GGWP  VR  L+ +H   Y   D+    R    R++K  A+KM+
Sbjct:  230 IIVGGTDGSGTRAVVTLLSNLNVLMVKDDACTFDVHAGEM--GGWPPVVRRALRFSHGANYKPEDIPENDRAYLRRSLKRFADKMK 313          
BLAST of mRNA_P-wetherbeei_contig9899.1.1 vs. uniprot
Match: A0A1Z5JYM4_FISSO (Uncharacterized protein n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JYM4_FISSO)

HSP 1 Score: 68.2 bits (165), Expect = 2.020e-11
Identity = 33/73 (45.21%), Postives = 46/73 (63.01%), Query Frame = 1
Query:    1 LVVGGTDGSGTRGVVALLQRLGVPMVIEDYGTLDVHASYMVKG-GWPEAVRPVLQLTHSPQYAVCDVEAPVRE 216
            L++GG+DGSGTR  V +L  L VPM+++D  TLD+HA     G GWP  V  V+  THS +Y   D+   V++
Sbjct:   12 LIIGGSDGSGTRAFVDVLGHLHVPMLVDDKATLDIHAPCFYHGDGWPHLVNRVMNETHSARYEFSDLSPSVQD 84          
BLAST of mRNA_P-wetherbeei_contig9899.1.1 vs. uniprot
Match: A0A7R9WRJ1_9STRA (Hypothetical protein n=1 Tax=Craspedostauros australis TaxID=1486917 RepID=A0A7R9WRJ1_9STRA)

HSP 1 Score: 64.7 bits (156), Expect = 2.550e-10
Identity = 32/53 (60.38%), Postives = 41/53 (77.36%), Query Frame = 1
Query:    1 LVVGGTDGSGTRGVVALLQRLGVPMVIEDYGTLDVHASYMVKGGWPEAVRPVL 159
            LV+ GTDGSGTRGV A+LQ+LGVP+V++D+  LDVHA+ +  GGW   VR  L
Sbjct:   63 LVMVGTDGSGTRGVAAILQQLGVPLVVDDFVQLDVHAASI--GGWTPLVRSAL 113          
BLAST of mRNA_P-wetherbeei_contig9899.1.1 vs. uniprot
Match: A0A1E7EYM7_9STRA (Uncharacterized protein n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7EYM7_9STRA)

HSP 1 Score: 58.9 bits (141), Expect = 3.750e-8
Identity = 33/59 (55.93%), Postives = 41/59 (69.49%), Query Frame = 1
Query:    1 LVVGGTDGSGTRGVVALLQR-LGVPMVIEDYGTLDVHASYMV-KGGWPEAVRPVLQLTH 171
            L+VGG+DGSGTRG+V +L+  L V  +IED  TLDVH   M  K GWPE V  VL +T+
Sbjct:  135 LLVGGSDGSGTRGMVDILKNELYVDFIIEDPATLDVHGQIMYDKRGWPELVLQVLNVTN 193          
BLAST of mRNA_P-wetherbeei_contig9899.1.1 vs. uniprot
Match: A0A1E7ESZ3_9STRA (Rhodanese domain-containing protein n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7ESZ3_9STRA)

HSP 1 Score: 53.9 bits (128), Expect = 1.670e-6
Identity = 25/52 (48.08%), Postives = 38/52 (73.08%), Query Frame = 1
Query:    1 LVVGGTDGSGTRGVVALLQRLGVPMVIEDYGTLDVHASYMVKGGWPEAVRPV 156
            +++GG+DGSGTR +V LL+ LG  ++ +D  T DVHAS ++K GWP  ++ V
Sbjct:   32 VMIGGSDGSGTRAIVELLRELGTIIISDDPQTFDVHAS-ILKNGWPGFIQRV 82          
BLAST of mRNA_P-wetherbeei_contig9899.1.1 vs. uniprot
Match: A0A448ZPV2_9STRA (Uncharacterized protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448ZPV2_9STRA)

HSP 1 Score: 52.8 bits (125), Expect = 5.520e-6
Identity = 25/52 (48.08%), Postives = 35/52 (67.31%), Query Frame = 1
Query:    1 LVVGGTDGSGTRGVVALLQRLGVPMVIEDYGTLDVHASYMVKGGWPEAVRPV 156
            L+VGG+DGSGTR  V  L+ LG  ++ ED  + DVHA+ +  GGWPE +  +
Sbjct:  111 LLVGGSDGSGTRAFVQTLRELGTTIISEDKYSFDVHANEI--GGWPELIEEI 160          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig9899.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 9
Match NameE-valueIdentityDescription
D8LQ47_ECTSI6.420e-2056.99APPLE domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5L0U6_9PHAE6.420e-1854.65Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A482SCK3_9ARCH5.560e-1447.19APPLE domain-containing protein n=1 Tax=archaeon T... [more]
A0A7S2TNP4_9EUKA6.730e-1347.67Hypothetical protein n=1 Tax=Lotharella oceanica T... [more]
A0A1Z5JYM4_FISSO2.020e-1145.21Uncharacterized protein n=2 Tax=Fistulifera solari... [more]
A0A7R9WRJ1_9STRA2.550e-1060.38Hypothetical protein n=1 Tax=Craspedostauros austr... [more]
A0A1E7EYM7_9STRA3.750e-855.93Uncharacterized protein n=1 Tax=Fragilariopsis cyl... [more]
A0A1E7ESZ3_9STRA1.670e-648.08Rhodanese domain-containing protein n=1 Tax=Fragil... [more]
A0A448ZPV2_9STRA5.520e-648.08Uncharacterized protein n=1 Tax=Pseudo-nitzschia m... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig9899contigP-wetherbeei_contig9899:4..270 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D8LQ47
Model size267
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.05e-20
EggNOG OGs2D47D@1|root,2SU61@2759|Eukaryota
Cds size267
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187115.3968046-CDS-P-wetherbeei_contig9899:3..2701683187115.3968046-CDS-P-wetherbeei_contig9899:3..270Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig9899 4..270 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig9899.1.1prot_P-wetherbeei_contig9899.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig9899 4..270 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig9899.1.1

>prot_P-wetherbeei_contig9899.1.1 ID=prot_P-wetherbeei_contig9899.1.1|Name=mRNA_P-wetherbeei_contig9899.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=89bp
LVVGGTDGSGTRGVVALLQRLGVPMVIEDYGTLDVHASYMVKGGWPEAVR
PVLQLTHSPQYAVCDVEAPVREATLRAVKVLAEKMRASS
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mRNA from alignment at P-wetherbeei_contig9899:4..270-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig9899.1.1 ID=mRNA_P-wetherbeei_contig9899.1.1|Name=mRNA_P-wetherbeei_contig9899.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=267bp|location=Sequence derived from alignment at P-wetherbeei_contig9899:4..270- (Phaeothamnion wetherbeei SAG_119_79)
CTCGTCGTTGGCGGCACAGACGGCTCGGGCACCCGCGGCGTCGTCGCGCT GCTGCAGCGGCTCGGCGTCCCGATGGTCATCGAGGACTACGGCACGTTGG ACGTGCACGCCAGCTACATGGTGAAGGGCGGCTGGCCGGAGGCGGTCCGG CCCGTCCTGCAGCTGACGCACAGCCCACAGTACGCTGTCTGCGACGTCGA GGCGCCGGTGCGGGAGGCGACGTTGCGGGCGGTGAAGGTGCTGGCAGAAA AGATGCGGGCGTCAAGC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig9899:4..270-

>mRNA_P-wetherbeei_contig9899.1.1 ID=mRNA_P-wetherbeei_contig9899.1.1|Name=mRNA_P-wetherbeei_contig9899.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=267bp|location=Sequence derived from alignment at P-wetherbeei_contig9899:4..270- (Phaeothamnion wetherbeei SAG_119_79)
CTCGTCGTTGGCGGCACAGACGGCTCGGGCACCCGCGGCGTCGTCGCGCT
GCTGCAGCGGCTCGGCGTCCCGATGGTCATCGAGGACTACGGCACGTTGG
ACGTGCACGCCAGCTACATGGTGAAGGGCGGCTGGCCGGAGGCGGTCCGG
CCCGTCCTGCAGCTGACGCACAGCCCACAGTACGCTGTCTGCGACGTCGA
GGCGCCGGTGCGGGAGGCGACGTTGCGGGCGGTGAAGGTGCTGGCAGAAA
AGATGCGGGCGTCAAGC
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