mRNA_P-wetherbeei_contig9867.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig9867.1.1
Unique NamemRNA_P-wetherbeei_contig9867.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig9867.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig9867contigP-wetherbeei_contig9867:95..1011 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog13616.ENSMODP00000012509
Preferred nameVTI1B
PFAMsV-SNARE,V-SNARE_C
Model size776
Max annot lvl33208|Metazoa
KEGG koko:K08493
KEGG Pathwayko04130,ko04138,map04130,map04138
Hectar predicted targeting categoryother localisation
GOsGO:0000149,GO:0000323,GO:0002576,GO:0003674,GO:0005484,GO:0005488,GO:0005515,GO:0005575,GO:0005576,GO:0005622,GO:0005623,GO:0005737,GO:0005764,GO:0005765,GO:0005768,GO:0005769,GO:0005770,GO:0005773,GO:0005774,GO:0005783,GO:0005789,GO:0005794,GO:0005798,GO:0005829,GO:0006605,GO:0006623,GO:0006810,GO:0006886,GO:0006887,GO:0006888,GO:0006891,GO:0006892,GO:0006896,GO:0006904,GO:0006906,GO:0006996,GO:0007034,GO:0008021,GO:0008104,GO:0008150,GO:0008200,GO:0008283,GO:0009987,GO:0010008,GO:0012505,GO:0012506,GO:0012507,GO:0015031,GO:0015833,GO:0016020,GO:0016043,GO:0016050,GO:0016192,GO:0016197,GO:0016247,GO:0016248,GO:0016482,GO:0017081,GO:0019869,GO:0022406,GO:0030133,GO:0030134,GO:0030135,GO:0030141,GO:0030658,GO:0030659,GO:0030660,GO:0030662,GO:0031090,GO:0031091,GO:0031093,GO:0031201,GO:0031410,GO:0031901,GO:0031902,GO:0031974,GO:0031982,GO:0031983,GO:0031984,GO:0032879,GO:0032880,GO:0032940,GO:0032991,GO:0033036,GO:0033365,GO:0034613,GO:0034774,GO:0036477,GO:0042147,GO:0042175,GO:0042886,GO:0043025,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0044297,GO:0044422,GO:0044424,GO:0044425,GO:0044432,GO:0044433,GO:0044437,GO:0044440,GO:0044444,GO:0044446,GO:0044456,GO:0044464,GO:0045055,GO:0045184,GO:0045202,GO:0046903,GO:0046907,GO:0048193,GO:0048278,GO:0048280,GO:0048284,GO:0048471,GO:0050789,GO:0051179,GO:0051234,GO:0051640,GO:0051641,GO:0051649,GO:0055037,GO:0055038,GO:0060205,GO:0060341,GO:0061024,GO:0061025,GO:0065007,GO:0065009,GO:0070013,GO:0070382,GO:0070727,GO:0071702,GO:0071705,GO:0071840,GO:0072594,GO:0072665,GO:0072666,GO:0090174,GO:0097458,GO:0097708,GO:0098588,GO:0098772,GO:0098793,GO:0098796,GO:0098805,GO:0098827,GO:0098852,GO:0099106,GO:0099503,GO:0140029,GO:0140056,GO:1903076,GO:1903827,GO:1904375,GO:1905475
Exons2
Evalue0.000296
EggNOG OGsKOG1666@1|root,KOG1666@2759|Eukaryota,39CX5@33154|Opisthokonta,3BBG5@33208|Metazoa,3CRFQ@33213|Bilateria,485E6@7711|Chordata,48Y0K@7742|Vertebrata,3JCR0@40674|Mammalia,4JYC2@9263|Metatheria
DescriptionVesicle transport v-SNARE protein N-terminus
Cds size273
COG categoryU
BRITEko00000,ko00001,ko04131
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187113.869591-UTR-P-wetherbeei_contig9867:94..2771683187113.869591-UTR-P-wetherbeei_contig9867:94..277Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig9867 95..277 +
1683187113.9045076-UTR-P-wetherbeei_contig9867:691..10111683187113.9045076-UTR-P-wetherbeei_contig9867:691..1011Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig9867 692..1011 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187113.8829877-CDS-P-wetherbeei_contig9867:277..4481683187113.8829877-CDS-P-wetherbeei_contig9867:277..448Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig9867 278..448 +
1683187113.895316-CDS-P-wetherbeei_contig9867:589..6911683187113.895316-CDS-P-wetherbeei_contig9867:589..691Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig9867 590..691 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig9867.1.1prot_P-wetherbeei_contig9867.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig9867 278..691 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig9867.1.1

>prot_P-wetherbeei_contig9867.1.1 ID=prot_P-wetherbeei_contig9867.1.1|Name=mRNA_P-wetherbeei_contig9867.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=91bp
MSRTSYGSTARTVPVNYEGRQLIADSRRVAQETEELGDEVLDSLHHQRGQ
LENANSKVVDMKTMTKKARMELREMERKAAIPRHLFTPPF*
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mRNA from alignment at P-wetherbeei_contig9867:95..1011+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig9867.1.1 ID=mRNA_P-wetherbeei_contig9867.1.1|Name=mRNA_P-wetherbeei_contig9867.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=917bp|location=Sequence derived from alignment at P-wetherbeei_contig9867:95..1011+ (Phaeothamnion wetherbeei SAG_119_79)
TTTAATCCCAAAACAGGAACATTTTGGGATGCAGAGAAAGAAAGTGAAAA
TCCTGGCTGGAGTTTGGAGTGACTAGTGAGCGAAAAACTAATAACCATCA
ATTGCTGATAACGTCAGAAAAATCCTGGAAAGGGGAAGCTGGAGAGAGTC
AAACGCTTTTAGACCTGGGGTTTCCACTTGGGTATGTCCAGGACCAGCTA
TGGCTCTACGGCCAGAACTGTCCCCGTCAACTACGAAGGCAGGCAACTCA
TCGCGGACAGTAGAAGAGTTGCGCAGGAGACAGAGGAGCTCGGCGACGAG
GTGCTCGACAGCTTGCACCACCAAAGAGGCCAATTGGAGAACGCGAATAG
CAAGGTGAGGCTGGAAGTACAAAGGTTTCCTTCCCACGATGAGGAAATGC
GCGCTGCAAAGGCTCCCATGTGCAAAGCCTGTTTGTCACTTGCAGCGTAC
CACTCGCTTGACTCCCTGGCGCTGCCTTTTTCATAATCATCCCAGGTGGT
GGACATGAAGACCATGACGAAGAAAGCGCGGATGGAGCTGCGGGAGATGG
AGCGAAAAGCAGCAATACCCAGGCATCTCTTTACGCCACCATTTTAGTGC
TGCTCGTCCTGATCGGGCTCGTCATCTACAGAGAGGCGACCAACAGCGGA
AAGCTCTTTTAAAGTGTGCGGAGCGCACGCGGTTCACACTCCGGCCAGCT
CGCTCTTTGGACGCGGCGGTTTCAACGGAGCCGGCAGCGCCTCTGGACAG
TAATGACCTTGTTATGATATTGTCCAGTACAAAACCGAGTCTTGCTTAGG
GCTCTTATATAATTGTGTGCCTGACGAATTTCTTCAGAATGGCTTGAATT
TCCTGGCTTCTTTCATTCGAGCAACCCTGGCCTTATCCTCCTCGAATTTC
TGCCGAAGCTGCAGCAG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig9867:95..1011+

>mRNA_P-wetherbeei_contig9867.1.1 ID=mRNA_P-wetherbeei_contig9867.1.1|Name=mRNA_P-wetherbeei_contig9867.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=273bp|location=Sequence derived from alignment at P-wetherbeei_contig9867:95..1011+ (Phaeothamnion wetherbeei SAG_119_79)
ATGTCCAGGACCAGCTATGGCTCTACGGCCAGAACTGTCCCCGTCAACTA
CGAAGGCAGGCAACTCATCGCGGACAGTAGAAGAGTTGCGCAGGAGACAG
AGGAGCTCGGCGACGAGGTGCTCGACAGCTTGCACCACCAAAGAGGCCAA
TTGGAGAACGCGAATAGCAAGGTGGTGGACATGAAGACCATGACGAAGAA
AGCGCGGATGGAGCTGCGGGAGATGGAGCGAAAAGCAGCAATACCCAGGC
ATCTCTTTACGCCACCATTTTAG
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