mRNA_P-wetherbeei_contig9859.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig9859.1.1
Unique NamemRNA_P-wetherbeei_contig9859.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig9859.1.1 vs. uniprot
Match: A0A835Z4Z5_9STRA (RanBP2-type domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z4Z5_9STRA)

HSP 1 Score: 74.3 bits (181), Expect = 7.510e-13
Identity = 56/130 (43.08%), Postives = 72/130 (55.38%), Query Frame = 1 
Query:    1 LDVSGNAEVNDGLLKATCNFSPDLRRLAAAACLALDGSFLDR-LAVSCPRLESLVLARCHGVADGAIQTFLLEAAAALAVRGGGLATLSLDGCAGLSDAGLRMVLRGCPRLRRVSLLRCIGLTPAGGEWR 387
            L  SG A+V D  L+A         R   AA L+   +   R L+ S   L +L L+RC GV     Q        AL  RG GL +L+LDGCAG++DA LR+VLRG P+LRR S++ C  LTP+G  WR
Sbjct:  189 LSTSGCAKVTDQSLQAFFQNCSTAVRHPPAALLSAAAAHCPRPLSPSMQHLCALDLSRC-GVGGLTAQ--------ALGARGAGLQSLTLDGCAGVTDAALRLVLRGTPQLRRASVIGCGALTPSGA-WR 308
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BLAST of mRNA_P-wetherbeei_contig9859.1.1 vs. uniprot
Match: UPI001B7EA4CD (putative F-box/LRR-repeat protein 9 n=1 Tax=Juglans microcarpa x Juglans regia TaxID=2249226 RepID=UPI001B7EA4CD)

HSP 1 Score: 53.5 bits (127), Expect = 1.060e-5
Identity = 41/125 (32.80%), Postives = 61/125 (48.80%), Query Frame = 1 
Query:    7 VSGNAEVNDGLLKATCNFSPDLRRLAAAACLALDGSFLDRLAVSCPRLESLVLAR--CHGVADGAIQTFLLEAAAALAVRGGGLATLSLDGCAGLSDAGLRMVLRGCPRLRRVSLLRCIGLTPAG 375
            V  N  ++D  L       P L  L  + C  +   FL+ +  SCP L+SL L R  C G        +    A A+A    GL +L LDG   L++ G++++L+GCPRL+ + L  C  +T  G
Sbjct:  129 VFWNFSISDKGLSEIAASIPLLEELEISYCFGITEKFLEAVGRSCPHLKSLKLRREVCWGDPFNECDLW----AVAIAKNMPGLVSLQLDGN-NLTNEGVQVILKGCPRLQSLELRHCRYVTMKG 248
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BLAST of mRNA_P-wetherbeei_contig9859.1.1 vs. uniprot
Match: UPI001C7AD6D1 (Uncharacterized protein n=4 Tax=Carya illinoinensis TaxID=32201 RepID=UPI001C7AD6D1)

HSP 1 Score: 50.8 bits (120), Expect = 9.440e-5
Identity = 40/126 (31.75%), Postives = 64/126 (50.79%), Query Frame = 1 
Query:   28 NDGLLKATCNFSPDLRRLAAAACLALDGSFLDRLAVSCPRLESLVLARCHGVADGAIQTFLLEAAAALAVRGGGLATLSLDGCAGLSDAGLRMVLRGCPRLRRVSLLRCIGLTPAGG--EWRRKEV 399
            N GL +   N  P L +L  + C  +   FL+ +  SCP L+SL L R     D   +  +   A A+A    GL +L  DG   L++ G++++L+GCPRL+ + L  C  +T  G    W  +++
Sbjct:  132 NKGLSEIAANI-PLLEKLEISYCFWITEKFLEAVGRSCPHLKSLKLIREVYWGDPFKECDIW--AVAIAKNMPGLVSLQFDGN-NLTNEGVQVILKGCPRLQSLELRHCRYVTMKGDFERWCSEQI 253
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig9859.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A835Z4Z5_9STRA7.510e-1343.08RanBP2-type domain-containing protein n=1 Tax=Trib... [more]
UPI001B7EA4CD1.060e-532.80putative F-box/LRR-repeat protein 9 n=1 Tax=Juglan... [more]
UPI001C7AD6D19.440e-531.75Uncharacterized protein n=4 Tax=Carya illinoinensi... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig9859contigP-wetherbeei_contig9859:492..959 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog4113.PGSC0003DMT400063732
PFAMsLRR_6
Model size402
Max annot lvl35493|Streptophyta
KEGG koko:K10268
Hectar predicted targeting categoryother localisation
Exons2
Evalue9.44e-10
EggNOG OGsKOG1947@1|root,KOG1947@2759|Eukaryota,37HMS@33090|Viridiplantae,3GG3W@35493|Streptophyta,44B5F@71274|asterids
DescriptionLeucine-rich repeat - CC (cysteine-containing) subfamily
Cds size402
COG categoryS
BRITEko00000,ko04121
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187113.6046815-CDS-P-wetherbeei_contig9859:491..7161683187113.6046815-CDS-P-wetherbeei_contig9859:491..716Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig9859 492..716 +
1683187113.6213892-CDS-P-wetherbeei_contig9859:782..9591683187113.6213892-CDS-P-wetherbeei_contig9859:782..959Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig9859 783..959 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig9859.1.1prot_P-wetherbeei_contig9859.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig9859 492..959 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig9859.1.1

>prot_P-wetherbeei_contig9859.1.1 ID=prot_P-wetherbeei_contig9859.1.1|Name=mRNA_P-wetherbeei_contig9859.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=134bp
LDVSGNAEVNDGLLKATCNFSPDLRRLAAAACLALDGSFLDRLAVSCPRL
ESLVLARCHGVADGAIQTFLLEAAAALAVRGGGLATLSLDGCAGLSDAGL
RMVLRGCPRLRRVSLLRCIGLTPAGGEWRRKEV*
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mRNA from alignment at P-wetherbeei_contig9859:492..959+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig9859.1.1 ID=mRNA_P-wetherbeei_contig9859.1.1|Name=mRNA_P-wetherbeei_contig9859.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=468bp|location=Sequence derived from alignment at P-wetherbeei_contig9859:492..959+ (Phaeothamnion wetherbeei SAG_119_79)
TTGGACGTGAGCGGCAACGCCGAGGTGAACGACGGCCTGTTGAAGGCTAC
CTGCAACTTTTCTCCTGACCTGCGGAGGCTAGCTGCCGCCGCCTGTTTGG
CCCTCGACGGCTCTTTCCTCGACCGGCTGGCTGTCAGTTGCCCGCGGCTC
GAATCTCTCGTCCTGGCGCGCTGCCACGGCGTCGCCGATGGCGCGATCCA
GACATTCCTGCTTGAGGCGGCCGCTGTCGCAGGCGGCACGCTCCGCTCGC
TCAATGTCGGCGGCTGCGGCGTGGGCCCGCTGACGCTACAGGCGTTGGCG
GTGCGTGGCGGCGGGCTGGCGACGCTCTCCTTGGACGGCTGCGCCGGGCT
GAGCGACGCGGGGCTGCGGATGGTGCTGCGGGGGTGCCCGCGGCTGCGGC
GGGTCTCACTGCTGCGTTGCATCGGCCTGACGCCGGCAGGAGGTGAGTGG
AGAAGGAAAGAAGTTTGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig9859:492..959+

>mRNA_P-wetherbeei_contig9859.1.1 ID=mRNA_P-wetherbeei_contig9859.1.1|Name=mRNA_P-wetherbeei_contig9859.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=402bp|location=Sequence derived from alignment at P-wetherbeei_contig9859:492..959+ (Phaeothamnion wetherbeei SAG_119_79)
TTGGACGTGAGCGGCAACGCCGAGGTGAACGACGGCCTGTTGAAGGCTAC
CTGCAACTTTTCTCCTGACCTGCGGAGGCTAGCTGCCGCCGCCTGTTTGG
CCCTCGACGGCTCTTTCCTCGACCGGCTGGCTGTCAGTTGCCCGCGGCTC
GAATCTCTCGTCCTGGCGCGCTGCCACGGCGTCGCCGATGGCGCGATCCA
GACATTCCTGCTTGAGGCGGCCGCTGCGTTGGCGGTGCGTGGCGGCGGGC
TGGCGACGCTCTCCTTGGACGGCTGCGCCGGGCTGAGCGACGCGGGGCTG
CGGATGGTGCTGCGGGGGTGCCCGCGGCTGCGGCGGGTCTCACTGCTGCG
TTGCATCGGCCTGACGCCGGCAGGAGGTGAGTGGAGAAGGAAAGAAGTTT
GA
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