prot_P-wetherbeei_contig9859.1.1 (polypeptide) Phaeothamnion wetherbeei SAG_119_79

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_P-wetherbeei_contig9859.1.1
Unique Nameprot_P-wetherbeei_contig9859.1.1
Typepolypeptide
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Sequence length134
Homology
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BLAST of mRNA_P-wetherbeei_contig9859.1.1 vs. uniprot
Match: A0A835Z4Z5_9STRA (RanBP2-type domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z4Z5_9STRA)

HSP 1 Score: 74.3 bits (181), Expect = 7.510e-13
Identity = 56/130 (43.08%), Postives = 72/130 (55.38%), Query Frame = 0 
Query:    1 LDVSGNAEVNDGLLKATCNFSPDLRRLAAAACLALDGSFLDR-LAVSCPRLESLVLARCHGVADGAIQTFLLEAAAALAVRGGGLATLSLDGCAGLSDAGLRMVLRGCPRLRRVSLLRCIGLTPAGGEWR 129
            L  SG A+V D  L+A         R   AA L+   +   R L+ S   L +L L+RC GV     Q        AL  RG GL +L+LDGCAG++DA LR+VLRG P+LRR S++ C  LTP+G  WR
Sbjct:  189 LSTSGCAKVTDQSLQAFFQNCSTAVRHPPAALLSAAAAHCPRPLSPSMQHLCALDLSRC-GVGGLTAQ--------ALGARGAGLQSLTLDGCAGVTDAALRLVLRGTPQLRRASVIGCGALTPSGA-WR 308
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BLAST of mRNA_P-wetherbeei_contig9859.1.1 vs. uniprot
Match: UPI001B7EA4CD (putative F-box/LRR-repeat protein 9 n=1 Tax=Juglans microcarpa x Juglans regia TaxID=2249226 RepID=UPI001B7EA4CD)

HSP 1 Score: 53.5 bits (127), Expect = 1.060e-5
Identity = 41/125 (32.80%), Postives = 61/125 (48.80%), Query Frame = 0 
Query:    3 VSGNAEVNDGLLKATCNFSPDLRRLAAAACLALDGSFLDRLAVSCPRLESLVLAR--CHGVADGAIQTFLLEAAAALAVRGGGLATLSLDGCAGLSDAGLRMVLRGCPRLRRVSLLRCIGLTPAG 125
            V  N  ++D  L       P L  L  + C  +   FL+ +  SCP L+SL L R  C G        +    A A+A    GL +L LDG   L++ G++++L+GCPRL+ + L  C  +T  G
Sbjct:  129 VFWNFSISDKGLSEIAASIPLLEELEISYCFGITEKFLEAVGRSCPHLKSLKLRREVCWGDPFNECDLW----AVAIAKNMPGLVSLQLDGN-NLTNEGVQVILKGCPRLQSLELRHCRYVTMKG 248
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BLAST of mRNA_P-wetherbeei_contig9859.1.1 vs. uniprot
Match: UPI001C7AD6D1 (Uncharacterized protein n=4 Tax=Carya illinoinensis TaxID=32201 RepID=UPI001C7AD6D1)

HSP 1 Score: 50.8 bits (120), Expect = 9.440e-5
Identity = 40/126 (31.75%), Postives = 64/126 (50.79%), Query Frame = 0 
Query:   10 NDGLLKATCNFSPDLRRLAAAACLALDGSFLDRLAVSCPRLESLVLARCHGVADGAIQTFLLEAAAALAVRGGGLATLSLDGCAGLSDAGLRMVLRGCPRLRRVSLLRCIGLTPAGG--EWRRKEV 133
            N GL +   N  P L +L  + C  +   FL+ +  SCP L+SL L R     D   +  +   A A+A    GL +L  DG   L++ G++++L+GCPRL+ + L  C  +T  G    W  +++
Sbjct:  132 NKGLSEIAANI-PLLEKLEISYCFWITEKFLEAVGRSCPHLKSLKLIREVYWGDPFKECDIW--AVAIAKNMPGLVSLQFDGN-NLTNEGVQVILKGCPRLQSLELRHCRYVTMKGDFERWCSEQI 253
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig9859.1.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A835Z4Z5_9STRA7.510e-1343.08RanBP2-type domain-containing protein n=1 Tax=Trib... [more]
UPI001B7EA4CD1.060e-532.80putative F-box/LRR-repeat protein 9 n=1 Tax=Juglan... [more]
UPI001C7AD6D19.440e-531.75Uncharacterized protein n=4 Tax=Carya illinoinensi... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR032675Leucine-rich repeat domain superfamilyGENE3D3.80.10.10Ribonuclease Inhibitorcoord: 1..72
e-value: 1.3E-5
score: 26.3
IPR032675Leucine-rich repeat domain superfamilyGENE3D3.80.10.10Ribonuclease Inhibitorcoord: 73..129
e-value: 1.1E-8
score: 36.4
NoneNo IPR availablePANTHERPTHR13318UNCHARACTERIZEDcoord: 73..125
NoneNo IPR availablePANTHERPTHR13318:SF91F-BOX/LRR-REPEAT PROTEIN 3coord: 9..69
NoneNo IPR availablePANTHERPTHR13318:SF91F-BOX/LRR-REPEAT PROTEIN 3coord: 73..125
NoneNo IPR availablePANTHERPTHR13318UNCHARACTERIZEDcoord: 9..69
NoneNo IPR availableSUPERFAMILY52047RNI-likecoord: 1..122

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig9859contigP-wetherbeei_contig9859:492..959 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig9859.1.1mRNA_P-wetherbeei_contig9859.1.1Phaeothamnion wetherbeei SAG_119_79mRNAP-wetherbeei_contig9859 492..959 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_P-wetherbeei_contig9859.1.1 ID=prot_P-wetherbeei_contig9859.1.1|Name=mRNA_P-wetherbeei_contig9859.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=134bp
LDVSGNAEVNDGLLKATCNFSPDLRRLAAAACLALDGSFLDRLAVSCPRL
ESLVLARCHGVADGAIQTFLLEAAAALAVRGGGLATLSLDGCAGLSDAGL
RMVLRGCPRLRRVSLLRCIGLTPAGGEWRRKEV*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR032675LRR_dom_sf