mRNA_P-wetherbeei_contig985.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig985.1.1
Unique NamemRNA_P-wetherbeei_contig985.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig985.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig985contigP-wetherbeei_contig985:656..3711 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size3056
Hectar predicted targeting categoryother localisation
Exons1
Cds size2916
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187113.1227748-UTR-P-wetherbeei_contig985:655..7951683187113.1227748-UTR-P-wetherbeei_contig985:655..795Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig985 656..795 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187113.1427567-CDS-P-wetherbeei_contig985:795..37111683187113.1427567-CDS-P-wetherbeei_contig985:795..3711Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig985 796..3711 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig985.1.1prot_P-wetherbeei_contig985.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig985 796..3711 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig985.1.1

>prot_P-wetherbeei_contig985.1.1 ID=prot_P-wetherbeei_contig985.1.1|Name=mRNA_P-wetherbeei_contig985.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=972bp
MKKKRVSREQAEAPRCGSRIGVTESLRPQGGGAKRLSDTAFLLEKGQGST
KALMDRNAIPALEDIARHIRVFVGDASAVRAAPTAAKAVGAAPTEIETRG
ESRNNERDAALAWFSSLSAPERSLALATTDAEWCNLVAAMAARLRRQASS
GIGLPRRPPGDEYCLQFSPSPHLPFPAALFAKGASIGGINRGNGSAAGAV
ARRRQLAALMVAATAAAGRNGGDGGGGGRASGTRASFGALWLPRRLCGLP
AEQEACRILQAAATVRADGGSGVGGGNGAGDAPILVTFSEAFLSDVPAFV
AAMDGASLGNFLRPPPLPPLPPATVSAAAPHQQPRTAGMAASCAAAAGAA
APAPRRAAAAGAAAGMAGDVWRQAWWLQRRDHCFLGAFLASRAEACLLQS
FHRSRGARDAAAATTAATAAAAAAVAGVETSSADEKAPPPPGTRAAASQD
IGIRADAEKPGVIADARRRRSCMEAVVSDLFAVRAYSSTLKPAHSAHSRY
RKRCDVRNDESDASGAAPAVNAFKDGARCGGNRRDGGSGAGDGASADPAT
ALDGHPPASAAAAAAAAAAAVLRRGRTPLELALYKGGDLEMGGLDWVSGR
PPDALVALRAAVVLLGGDDGGGGGGASGGGSGVRWQARAVGGAAPRAGGG
ELSAEALLASPLARSGALCQLFREELCARLEDWRARRLEAELLAETAAAA
AEAAAAADAAAQAAAAKRRRRAVQRQRVANAGAAGAAGECSADGSGNGSG
GGGGVGDDDDCAGDGRSGNIRSGGENRAGNSGGADDSRDAENGDFGGTYG
RMRCDQKRDGSVEKKSASGREELAAVAPASPAVDSLVEGLLTPDTLSNGR
ASSSSPAPRQGPVAPPLAPPRPAPPATAKAGAATRAGMAVSASVRPAAPE
CRNAGPPAAASGSRALPPARHSAPNPAGAAAGVAAASAKPSAAASAATEA
SGNAAPEQPQNGELSCKPRGRG
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mRNA from alignment at P-wetherbeei_contig985:656..3711+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig985.1.1 ID=mRNA_P-wetherbeei_contig985.1.1|Name=mRNA_P-wetherbeei_contig985.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=3056bp|location=Sequence derived from alignment at P-wetherbeei_contig985:656..3711+ (Phaeothamnion wetherbeei SAG_119_79)
TAATTAATGGGTGAGGGGTGAGGGGAGGAAGAGAGGATTTTGCGATATCT
CACACTCCTTCCCTACATTCCGTGAGCCGCCTGCTGCGCCAACTTTCTCC
GTGAAGGTAATGCCCTTGGGAAAATGTTGAGCGATCGAAAATGAAGAAGA
AACGAGTATCAAGGGAGCAGGCCGAGGCGCCTCGGTGCGGCTCACGCATC
GGTGTGACAGAATCACTGAGGCCGCAAGGCGGTGGCGCTAAGCGTTTATC
AGACACTGCCTTCCTTCTGGAGAAAGGCCAGGGTAGCACAAAGGCGTTGA
TGGATCGAAATGCCATTCCGGCCCTTGAGGACATCGCTCGCCACATTCGC
GTTTTCGTCGGCGATGCTTCCGCCGTTCGTGCTGCGCCGACTGCGGCCAA
AGCGGTTGGAGCGGCTCCTACTGAGATCGAAACGAGAGGCGAGAGTAGGA
ACAACGAACGGGACGCCGCACTGGCATGGTTCTCGTCCCTTTCGGCCCCA
GAACGGAGCCTGGCGCTCGCCACCACGGACGCCGAGTGGTGCAACCTTGT
CGCCGCCATGGCAGCGCGCCTGCGGCGGCAGGCCTCCTCGGGAATTGGTC
TGCCACGGCGGCCGCCGGGGGACGAATACTGCCTCCAGTTCTCTCCATCG
CCACATCTACCATTCCCGGCGGCACTCTTTGCCAAGGGCGCATCCATCGG
AGGCATCAACCGTGGCAATGGCAGCGCTGCCGGCGCGGTGGCGCGGCGAC
GCCAGCTGGCTGCTCTGATGGTGGCGGCGACCGCGGCGGCCGGACGGAAT
GGCGGCGATGGTGGCGGCGGCGGCAGAGCAAGCGGGACGCGGGCGTCTTT
CGGCGCGCTATGGTTGCCGCGGCGGCTCTGCGGGCTCCCGGCAGAGCAAG
AGGCCTGCCGGATCCTGCAGGCTGCCGCCACAGTTCGGGCCGACGGTGGC
AGCGGCGTCGGCGGCGGCAATGGTGCGGGAGACGCCCCGATTCTGGTCAC
CTTTTCCGAGGCCTTTCTAAGCGACGTCCCTGCCTTCGTGGCCGCCATGG
ATGGGGCATCGTTGGGCAACTTTCTCCGACCGCCGCCGCTGCCGCCGTTG
CCGCCGGCAACCGTGTCGGCAGCGGCACCACACCAGCAGCCAAGGACAGC
TGGAATGGCGGCTTCATGCGCGGCGGCGGCAGGAGCGGCGGCGCCGGCCC
CAAGACGAGCAGCGGCGGCAGGAGCGGCGGCGGGCATGGCAGGTGACGTC
TGGCGGCAGGCGTGGTGGCTGCAGCGGCGGGACCACTGCTTCCTCGGGGC
GTTTCTCGCCAGCCGCGCCGAAGCGTGCCTTCTCCAGAGCTTTCATCGGT
CCCGCGGCGCTCGGGACGCAGCTGCGGCGACGACGGCGGCGACGGCAGCA
GCGGCGGCGGCGGTGGCGGGTGTGGAAACCAGCAGTGCCGACGAGAAAGC
GCCGCCGCCGCCGGGAACGCGGGCGGCCGCCAGCCAGGACATCGGGATTC
GGGCTGACGCAGAAAAACCGGGGGTCATCGCTGACGCTCGGAGGCGCCGC
TCCTGCATGGAAGCGGTCGTGTCTGACCTTTTCGCGGTGCGAGCCTACTC
TTCCACGTTGAAGCCGGCACATTCGGCACATTCGCGCTATCGGAAACGCT
GTGATGTCCGCAACGACGAGAGCGACGCCAGCGGCGCCGCTCCAGCCGTC
AATGCGTTCAAGGATGGCGCAAGATGCGGCGGCAACCGCCGCGATGGAGG
CAGTGGCGCGGGTGACGGCGCTTCCGCGGACCCTGCGACGGCTCTTGACG
GGCATCCGCCAGCGTCCGCCGCCGCCGCTGCCGCTGCCGCCGCTGCAGCG
GTGCTCCGCCGCGGCCGCACGCCGCTGGAGCTGGCGCTGTACAAGGGCGG
CGACCTCGAGATGGGCGGGCTCGACTGGGTTTCCGGACGCCCGCCGGATG
CTCTCGTCGCGCTCCGTGCAGCGGTCGTCCTTCTTGGTGGCGACGATGGC
GGCGGTGGCGGCGGTGCCAGCGGCGGCGGCAGCGGGGTACGATGGCAGGC
TCGTGCAGTGGGGGGAGCGGCGCCAAGAGCGGGCGGCGGGGAGCTGTCGG
CAGAGGCGCTGCTGGCTTCGCCGCTGGCGCGTTCCGGCGCGCTGTGCCAG
CTCTTTCGGGAGGAGCTGTGTGCCCGGCTCGAGGACTGGCGGGCGCGCCG
GCTAGAGGCGGAGTTGTTGGCAGAAACCGCAGCGGCAGCTGCGGAGGCAG
CGGCGGCTGCGGACGCGGCGGCACAGGCGGCTGCAGCCAAGCGCCGCCGC
CGGGCGGTGCAGCGTCAGCGAGTCGCCAATGCGGGCGCTGCAGGCGCTGC
GGGCGAGTGCAGCGCTGATGGCAGCGGTAACGGCAGCGGCGGCGGCGGCG
GCGTTGGCGACGATGACGACTGCGCTGGAGATGGCCGCAGCGGTAACATC
AGGAGCGGCGGCGAAAACCGCGCCGGGAACAGCGGTGGTGCCGACGACAG
CAGAGACGCGGAGAACGGCGATTTTGGCGGAACCTACGGCAGAATGCGAT
GTGACCAGAAGCGTGACGGCAGTGTGGAGAAGAAGAGCGCCTCGGGTCGG
GAAGAGCTGGCGGCGGTAGCGCCGGCCTCTCCCGCTGTCGACTCCTTGGT
GGAAGGGCTGCTAACGCCGGACACGCTCTCGAACGGCAGAGCGTCCAGCT
CCAGCCCGGCGCCGCGGCAAGGGCCGGTGGCGCCGCCGTTGGCACCGCCG
AGGCCGGCCCCGCCGGCGACAGCGAAGGCTGGAGCTGCCACAAGGGCCGG
CATGGCTGTGTCGGCATCAGTGCGTCCGGCGGCGCCGGAATGCCGGAATG
CCGGACCGCCGGCGGCAGCTTCAGGGTCCAGGGCGCTACCACCAGCCCGT
CATAGCGCCCCCAATCCCGCGGGCGCAGCCGCAGGAGTTGCGGCTGCGAG
CGCGAAGCCTTCCGCTGCTGCTTCTGCCGCCACTGAGGCCTCAGGCAACG
CCGCTCCGGAGCAGCCGCAGAACGGCGAGCTTTCGTGCAAGCCGCGCGGC
CGCGGG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig985:656..3711+

>mRNA_P-wetherbeei_contig985.1.1 ID=mRNA_P-wetherbeei_contig985.1.1|Name=mRNA_P-wetherbeei_contig985.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=2916bp|location=Sequence derived from alignment at P-wetherbeei_contig985:656..3711+ (Phaeothamnion wetherbeei SAG_119_79)
ATGAAGAAGAAACGAGTATCAAGGGAGCAGGCCGAGGCGCCTCGGTGCGG
CTCACGCATCGGTGTGACAGAATCACTGAGGCCGCAAGGCGGTGGCGCTA
AGCGTTTATCAGACACTGCCTTCCTTCTGGAGAAAGGCCAGGGTAGCACA
AAGGCGTTGATGGATCGAAATGCCATTCCGGCCCTTGAGGACATCGCTCG
CCACATTCGCGTTTTCGTCGGCGATGCTTCCGCCGTTCGTGCTGCGCCGA
CTGCGGCCAAAGCGGTTGGAGCGGCTCCTACTGAGATCGAAACGAGAGGC
GAGAGTAGGAACAACGAACGGGACGCCGCACTGGCATGGTTCTCGTCCCT
TTCGGCCCCAGAACGGAGCCTGGCGCTCGCCACCACGGACGCCGAGTGGT
GCAACCTTGTCGCCGCCATGGCAGCGCGCCTGCGGCGGCAGGCCTCCTCG
GGAATTGGTCTGCCACGGCGGCCGCCGGGGGACGAATACTGCCTCCAGTT
CTCTCCATCGCCACATCTACCATTCCCGGCGGCACTCTTTGCCAAGGGCG
CATCCATCGGAGGCATCAACCGTGGCAATGGCAGCGCTGCCGGCGCGGTG
GCGCGGCGACGCCAGCTGGCTGCTCTGATGGTGGCGGCGACCGCGGCGGC
CGGACGGAATGGCGGCGATGGTGGCGGCGGCGGCAGAGCAAGCGGGACGC
GGGCGTCTTTCGGCGCGCTATGGTTGCCGCGGCGGCTCTGCGGGCTCCCG
GCAGAGCAAGAGGCCTGCCGGATCCTGCAGGCTGCCGCCACAGTTCGGGC
CGACGGTGGCAGCGGCGTCGGCGGCGGCAATGGTGCGGGAGACGCCCCGA
TTCTGGTCACCTTTTCCGAGGCCTTTCTAAGCGACGTCCCTGCCTTCGTG
GCCGCCATGGATGGGGCATCGTTGGGCAACTTTCTCCGACCGCCGCCGCT
GCCGCCGTTGCCGCCGGCAACCGTGTCGGCAGCGGCACCACACCAGCAGC
CAAGGACAGCTGGAATGGCGGCTTCATGCGCGGCGGCGGCAGGAGCGGCG
GCGCCGGCCCCAAGACGAGCAGCGGCGGCAGGAGCGGCGGCGGGCATGGC
AGGTGACGTCTGGCGGCAGGCGTGGTGGCTGCAGCGGCGGGACCACTGCT
TCCTCGGGGCGTTTCTCGCCAGCCGCGCCGAAGCGTGCCTTCTCCAGAGC
TTTCATCGGTCCCGCGGCGCTCGGGACGCAGCTGCGGCGACGACGGCGGC
GACGGCAGCAGCGGCGGCGGCGGTGGCGGGTGTGGAAACCAGCAGTGCCG
ACGAGAAAGCGCCGCCGCCGCCGGGAACGCGGGCGGCCGCCAGCCAGGAC
ATCGGGATTCGGGCTGACGCAGAAAAACCGGGGGTCATCGCTGACGCTCG
GAGGCGCCGCTCCTGCATGGAAGCGGTCGTGTCTGACCTTTTCGCGGTGC
GAGCCTACTCTTCCACGTTGAAGCCGGCACATTCGGCACATTCGCGCTAT
CGGAAACGCTGTGATGTCCGCAACGACGAGAGCGACGCCAGCGGCGCCGC
TCCAGCCGTCAATGCGTTCAAGGATGGCGCAAGATGCGGCGGCAACCGCC
GCGATGGAGGCAGTGGCGCGGGTGACGGCGCTTCCGCGGACCCTGCGACG
GCTCTTGACGGGCATCCGCCAGCGTCCGCCGCCGCCGCTGCCGCTGCCGC
CGCTGCAGCGGTGCTCCGCCGCGGCCGCACGCCGCTGGAGCTGGCGCTGT
ACAAGGGCGGCGACCTCGAGATGGGCGGGCTCGACTGGGTTTCCGGACGC
CCGCCGGATGCTCTCGTCGCGCTCCGTGCAGCGGTCGTCCTTCTTGGTGG
CGACGATGGCGGCGGTGGCGGCGGTGCCAGCGGCGGCGGCAGCGGGGTAC
GATGGCAGGCTCGTGCAGTGGGGGGAGCGGCGCCAAGAGCGGGCGGCGGG
GAGCTGTCGGCAGAGGCGCTGCTGGCTTCGCCGCTGGCGCGTTCCGGCGC
GCTGTGCCAGCTCTTTCGGGAGGAGCTGTGTGCCCGGCTCGAGGACTGGC
GGGCGCGCCGGCTAGAGGCGGAGTTGTTGGCAGAAACCGCAGCGGCAGCT
GCGGAGGCAGCGGCGGCTGCGGACGCGGCGGCACAGGCGGCTGCAGCCAA
GCGCCGCCGCCGGGCGGTGCAGCGTCAGCGAGTCGCCAATGCGGGCGCTG
CAGGCGCTGCGGGCGAGTGCAGCGCTGATGGCAGCGGTAACGGCAGCGGC
GGCGGCGGCGGCGTTGGCGACGATGACGACTGCGCTGGAGATGGCCGCAG
CGGTAACATCAGGAGCGGCGGCGAAAACCGCGCCGGGAACAGCGGTGGTG
CCGACGACAGCAGAGACGCGGAGAACGGCGATTTTGGCGGAACCTACGGC
AGAATGCGATGTGACCAGAAGCGTGACGGCAGTGTGGAGAAGAAGAGCGC
CTCGGGTCGGGAAGAGCTGGCGGCGGTAGCGCCGGCCTCTCCCGCTGTCG
ACTCCTTGGTGGAAGGGCTGCTAACGCCGGACACGCTCTCGAACGGCAGA
GCGTCCAGCTCCAGCCCGGCGCCGCGGCAAGGGCCGGTGGCGCCGCCGTT
GGCACCGCCGAGGCCGGCCCCGCCGGCGACAGCGAAGGCTGGAGCTGCCA
CAAGGGCCGGCATGGCTGTGTCGGCATCAGTGCGTCCGGCGGCGCCGGAA
TGCCGGAATGCCGGACCGCCGGCGGCAGCTTCAGGGTCCAGGGCGCTACC
ACCAGCCCGTCATAGCGCCCCCAATCCCGCGGGCGCAGCCGCAGGAGTTG
CGGCTGCGAGCGCGAAGCCTTCCGCTGCTGCTTCTGCCGCCACTGAGGCC
TCAGGCAACGCCGCTCCGGAGCAGCCGCAGAACGGCGAGCTTTCGTGCAA
GCCGCGCGGCCGCGGG
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