mRNA_P-wetherbeei_contig9846.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig9846.1.1
Unique NamemRNA_P-wetherbeei_contig9846.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig9846.1.1 vs. uniprot
Match: D7FYV5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FYV5_ECTSI)

HSP 1 Score: 286 bits (731), Expect = 7.680e-94
Identity = 142/245 (57.96%), Postives = 164/245 (66.94%), Query Frame = 1
Query:   28 CNGRGTCDDCRQVCLCDEGAGASDD-DVYAGELRSDCLEYACPTGKAWADGVATDSTYHNLAECSGNGKCDRDKGECSCFSGFSGAACDRNACPEECSGHGQCMSLKELAQTSNALPLSNDTTYGGIYSDSSVMWDSDSFFACVCDSSWDVGLAAGQTQSPEFFGPACSLRRCPSGDDPETRADETDCGGVAADGGGGGAGKVGAAGNLCHVDCSNRGLCDHETGLCACFRGYYGDNCGKLSALA 759
            CNG GTC+   + C C EG GA  D  +Y     +DC    CP GKAW D      + H   ECSG G CDRD GEC CF GF+GAAC+R+ CP++CS HG+C+++K LA TS+ALPLSN TTY G   D +V WD +  F CVCDS W+VGL AGQTQ PE+FGP CSLR CPSGDDP T  DETDC  V +       G  G AGNLCHVDCSNRG CD+ TGLC CF GYYG NCG+ S LA
Sbjct:   31 CNGHGTCNTGTRTCTCYEGWGADTDLTLYR---AADCSARVCPAGKAWGDVPTGSLSAHQEQECSGRGLCDRDSGECECFDGFTGAACERSGCPDDCSDHGRCVNMKALAVTSDALPLSNVTTYSG--EDDTVTWDEEMIFGCVCDSKWEVGLGAGQTQEPEWFGPDCSLRHCPSGDDPSTDVDETDCFNVTSSSVY--LGTAGRAGNLCHVDCSNRGTCDYATGLCECFTGYYGFNCGQQSVLA 268          
BLAST of mRNA_P-wetherbeei_contig9846.1.1 vs. uniprot
Match: A0A7S2AMA5_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2AMA5_9STRA)

HSP 1 Score: 273 bits (699), Expect = 2.370e-88
Identity = 140/258 (54.26%), Postives = 168/258 (65.12%), Query Frame = 1
Query:    1 QIGSGCP--SNCNGRGTCDDCRQVCLCDEGAGASDDDVYAGELRS-DCLEYACPTGKAWADGVATDSTYHNLAECSGNGKCDRDKGECSCFSGFSGAACDRNACPEECSGHGQCMSLKELAQTSNALPLSN-DTTYGGIYSDSSVMWDSDSFFACVCDSSWDVGLAAGQTQSPEFFGPACSLRRCPSGDDPETRADETDCGGVAADGGGGGAGKVGAAGNLCHVDCSNRGLCDHETGLCACFRGYYGDNCGKLSALAT 762
            + GSGC   S+C+GRG CD C+Q C+C EG G   D + AG   S DC E  CP  KA+ D   +  + H LAECS NG C+R  G C CF GF G AC R +CP +CSGHGQC+S+ EL   + A PL+  DTTYG     S+  WD++S  ACVCDS W VGL  GQTQ+ E+FGP CSL+ C SGDDPET+ DET C    A GG G    VG AGN CHVDCSNRG+CD+ TG CACF+G+YG NCG   A + 
Sbjct:   61 RAGSGCTALSDCHGRGVCDFCKQTCVCYEGYGKDTDTITAGGTISVDCSERVCPYAKAFGDVPYSTDSAHQLAECSNNGICERTSGSCQCFPGFEGDACQRRSCPNDCSGHGQCLSMAELVNAAAAHPLTAADTTYGFSAPVSAQSWDAESLQACVCDSRWTVGLGPGQTQTGEWFGPDCSLQHCSSGDDPETKVDETACFNKTAPGGRG----VGEAGNRCHVDCSNRGICDYSTGECACFQGWYGSNCGAKVAFSN 314          
BLAST of mRNA_P-wetherbeei_contig9846.1.1 vs. uniprot
Match: A0A5D6XZL0_9STRA (EGF-like domain-containing protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XZL0_9STRA)

HSP 1 Score: 268 bits (685), Expect = 6.390e-87
Identity = 131/245 (53.47%), Postives = 159/245 (64.90%), Query Frame = 1
Query:   22 SNCNGRGTCDDCRQVCLCDEGAGASDDDVYAGELRSDCLEYACPTGKAWADGVATDSTYHNLAECSGNGKCDRDKGECSCFSGFSGAACDRNACPEECSGHGQCMSLKELAQTSNALPLSNDTTYGGIYSDSSVMWDSDSFFACVCDSSWDVGLAAGQTQSPEFFGPACSLRRCPSGDDPETRADETDCGGVAADGGGGGAGKVGAAGNLCHVDCSNRGLCDHETGLCACFRGYYGDNCGKLSAL 756
            SNCNG G C    + C+C EG GA+ D         DC +  CP+G +WA      ++ H   ECS  G CDR  G+C CF+G+ GAAC R ACP  CSGHGQC+S++ +A+ +NA PLS  TTY G  ++++  WD +  F CVCDSSWDVGLAAGQ QS ++FG  CSL RCPSGDDP T  DETDCGG  A GG G     G  GN CH+DCSNRG CD+ TG CACF G+YG NC  LS +
Sbjct:   28 SNCNGHGRCVTASKTCICFEGYGATSD--ITSYKSPDCSKRVCPSGPSWAGIPTAANSAHPRTECSDAGYCDRSSGQCRCFAGYDGAACQRYACPNGCSGHGQCVSMQAMAELTNAAPLSAATTYAG--AEATTTWDQNRIFGCVCDSSWDVGLAAGQRQSSQWFGADCSLMRCPSGDDPMTTVDETDCGGKLAPGGVG----TGETGNKCHIDCSNRGKCDYTTGTCACFSGFYGSNCASLSPV 264          
BLAST of mRNA_P-wetherbeei_contig9846.1.1 vs. uniprot
Match: A0A7S2WUH0_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WUH0_9STRA)

HSP 1 Score: 266 bits (679), Expect = 1.430e-83
Identity = 141/269 (52.42%), Postives = 167/269 (62.08%), Query Frame = 1
Query:    4 IGSGCP--SNCNGRGTCDDCRQVCLCDEGAGASDDDVYAG-------ELRSDCLEYACPTGKAWADGVATDSTYH-NLAECSGNGKCDRDKGECSCFSGFSGAACDRNACPEECSGHGQCMSLKELAQTSNALPLS--NDTTYGGIYSDSSVMWDSDSFFACVCDSSWDVGLAAGQTQSPEFFGPACSLRRCPSGDDPETRA-DETDCGGVAADGGGGGAGKVGAAGNLCHVDCSNRGLCDHETGLCACFRGYYGDNCGKLSALATWED 771
            +GSGC    +C+G G CD C+Q C C EG G S     AG       +   DC    CP   A     +T S  H  L EC GNGKCDR  GEC C  G+ G AC R  CP +CSGHG+C++++ELA T  ALPLS  N + YG +   ++  WD D  FACVCDSSW+VGL +GQ Q PE+FGP CSLRRCP GDDP T   DETDC   +ADG  G     G  GNLCHVDCS RG+C+H TG CACF GYYG NCG +SA+A  +D
Sbjct:  177 VGSGCSWLLDCSGHGVCDHCKQRCECFEGYGGS----LAGGAAPPPMDAAPDCTSRTCPVAPAVRSMPSTASIAHAQLLECGGNGKCDRASGECVCALGWQGEACQRRRCPNDCSGHGRCLAMEELAATPEALPLSGSNGSMYGSLDRRATKAWDFDKAFACVCDSSWEVGLGSGQVQGPEYFGPDCSLRRCPGGDDPRTPGVDETDCSNKSADGFRG----RGQPGNLCHVDCSQRGICNHGTGTCACFEGYYGHNCGLVSAMAKQQD 437          
BLAST of mRNA_P-wetherbeei_contig9846.1.1 vs. uniprot
Match: A0A7S1UJF5_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1UJF5_9STRA)

HSP 1 Score: 266 bits (680), Expect = 1.630e-83
Identity = 136/257 (52.92%), Postives = 166/257 (64.59%), Query Frame = 1
Query:    4 IGSGCPSN--CNGRGTCDDCRQVCLCDEGAGASDDDVYAGELRSDCLEYACPTGKAWADGVATDSTYHNLAECSGNGKCDRDKGECSCFSGFSGAACDRNACPEECSGHGQCMSLKELAQTSNALPL-SNDTTYGGIYSDSSVMWDSDSFFACVCDSSWDVGLAAGQTQSPEFFGPACSLRRCPSGDDPETRADETDCGGVAADGGGGGAGKVGAAGNLCHVDCSNRGLCDHETGLCACFRGYYGDNCG-KLSALAT 762
            +G  C +   C G GTCD CR  C+CD+G G++ D VY   +  DC E  CP G+AW D     +  H  AECS  G CDR  G C+C +GF G AC +  CP +CSGHG CM++ EL   S ALPL S+   YG   ++++  WDS    ACVCDSSW VGLA+G+TQ PE+FG  CSL+RCP+GDDP T A ETDC GVA  GG    G  GA+GNLCHVDCSNRG CDH  G C CF G++G+NCG +L A  T
Sbjct:  211 VGPACTNKGTCFGHGTCDACRDKCVCDDGYGSTSD-VYEIYVFPDCSERVCPKGRAWGDVPTGATAAHADAECSNRGVCDRTTGICACVAGFGGEACQKKLCPNDCSGHGLCMNMHELGGISRALPLVSSSQVYGSSANEATTAWDSLLNMACVCDSSWSVGLASGETQEPEWFGADCSLKRCPTGDDPMTSAVETDCSGVAPVGGST-TGATGASGNLCHVDCSNRGKCDHTLGTCTCFEGFHGENCGYQLFAYNT 465          
BLAST of mRNA_P-wetherbeei_contig9846.1.1 vs. uniprot
Match: G5A2N6_PHYSP (EGF-like domain-containing protein n=4 Tax=Phytophthora TaxID=4783 RepID=G5A2N6_PHYSP)

HSP 1 Score: 257 bits (657), Expect = 1.600e-82
Identity = 128/246 (52.03%), Postives = 156/246 (63.41%), Query Frame = 1
Query:   22 SNCNGRGTCDDCRQVCLCDEGAGASDDDVYAGELRSDCLEYACPTGKAWADGVATDSTYHNLAECSGNGKCDRDKGECSCFSGFSGAACDRNACPEECSGHGQCMSLKELAQTSNALPLSNDTTYGGIYSDSSVMWDSDSFFACVCDSSWDVGLAAGQTQSPEFFGPACSLRRCPSGDDPETRADETDCGGVAADGGGGGAGKVGAAGNLCHVDCSNRGLCDHETGLCACFRGYYGDNCGKLSALA 759
            SNCN  G CD   + C C+EG GAS D         DC    CP G +W     + +T H  AECS  G CDR  G C C+ G+ G+AC R+ CP  CSGHGQC+S++ELA  ++A PLS  TTYGG  +  +  WD D    C+CDS W VGL AG++Q  ++FGP CS   CPSGDDP T  DETDC GV A GG G     GAAGNLCHVDC+NRG+CD+ +G+C+CF G+YG NC  LS LA
Sbjct:   39 SNCNAHGRCDALTKTCECNEGYGASTD--ITNYRSPDCSLRTCPAGPSWGGIPTSATTSHAKAECSDAGVCDRSTGTCMCYYGYEGSACQRSTCPNGCSGHGQCLSMRELATETSAFPLSPATTYGGDVT--ATTWDQDRIQGCLCDSYWPVGLGAGESQLSQWFGPDCSRMHCPSGDDPMTAEDETDCEGVVAAGGVG----PGAAGNLCHVDCANRGICDYSSGVCSCFPGFYGSNCASLSPLA 276          
BLAST of mRNA_P-wetherbeei_contig9846.1.1 vs. uniprot
Match: A0A5A8D842_CAFRO (Uncharacterized protein n=1 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8D842_CAFRO)

HSP 1 Score: 256 bits (655), Expect = 5.730e-82
Identity = 137/272 (50.37%), Postives = 163/272 (59.93%), Query Frame = 1
Query:   22 SNCNGRGTCDDCRQVCLCDEGAGASDDDVYAGELRSDCLEYACPTGKAWADGVATDSTYHNLAECSGNGKCDRDKGECSCFSGFSGAACDRNACPEECSGHGQCMSLKELAQTSNALPLSNDTTYGGIYSDSSVMWDSDSFFACVCDSSWDVGLAAGQTQSPEFFGPACSLRRCPSGDDPETRA-DETDC-----------GGVAADG-------GGGGAGKVG----AAGNLCHVDCSNRGLCDHETGLCACFRGYYGDNCGKLSALATWE 768
            +NCN  GTCD+  +VC C +G G+  D   A     DC +  CP  KAW D     +T HN AECS  G CDR  G C CF+GF G AC R++CP  CSGHG+C+S+ ++A  +NA P+   TTYGG   +S+V WD +  F CVCDS W VG  AGQTQ+  +FG  CS RRCPSGDD  T   DETDC           G V +DG       G G  G +G    A GN CHVDCSNRG+CD  +GLC CFRGYYG NCG  SALA  E
Sbjct:   26 NNCNSHGTCDETNRVCRCFDGFGSESD--LAVYKAPDCSQRVCPADKAWVDIPTGATTAHNNAECSNAGICDRGTGRCRCFAGFEGDACQRSSCPNGCSGHGKCVSMSQMAGEANAFPVGPATTYGGF--ESTVTWDENKIFGCVCDSIWTVGFGAGQTQATSWFGADCSQRRCPSGDDASTELRDETDCSYYTDNGETWHGAVLSDGTPDRANPGTGVTGTLGVDFGAVGNKCHVDCSNRGICDRTSGLCKCFRGYYGQNCGLRSALAKGE 293          
BLAST of mRNA_P-wetherbeei_contig9846.1.1 vs. uniprot
Match: A0A7S1CQ07_9STRA (Hypothetical protein n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1CQ07_9STRA)

HSP 1 Score: 254 bits (650), Expect = 2.300e-81
Identity = 127/251 (50.60%), Postives = 159/251 (63.35%), Query Frame = 1
Query:   25 NCNGRGTCDDCRQVCLCDEGAGASDDDVYAGELRSDCLEYACPTGKAWADGVATDSTYHNLAECSGNGKCDRDKGECSCFSGFSGAACDRNACPEECSGHGQCMSLKELAQTSNALPLSNDT---TYGGIYSDSSVMWDSDSFFACVCDSSWDVGLAAGQTQSPEFFGPACSLRRCPSGDDPETRADETDCGGVAADGGGGGAGKVGAAGNLCHVDCSNRGLCDHETGLCACFRGYYGDNCGKLSALATWE 768
            +CNG GTC+     C C +G G+S D         DC +  CP+G AWAD     +T H LAECS  G CDR  G+C CF+G+ G AC R+ACP ECSGHG+C+S+ ++A  +NA P+  ++   TYGG  S++   WD D  F CVCDSSW V LA+G TQ PE+FG  CSLR C SGDDP T ADETDC G   +G        G AGNLCHVDC+NRG+C++ TG+C CF G+YG  C   S LA  +
Sbjct:   35 DCNGHGTCNTATTQCACYDGWGSSSD--VTTYRAPDCSKRVCPSGNAWADAATATNTAHALAECSNAGICDRTTGKCRCFTGYDGEACQRSACPNECSGHGKCVSIAQMASENNAQPVDIESPAFTYGG--SEAVATWDEDKIFGCVCDSSWTVSLASGATQEPEWFGADCSLRHCASGDDPMTTADETDCVGKVRNGQTVAGRTGGVAGNLCHVDCANRGICNYNTGICDCFDGFYGVACTLQSELAVGD 281          
BLAST of mRNA_P-wetherbeei_contig9846.1.1 vs. uniprot
Match: A0A8J2X5G2_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2X5G2_9STRA)

HSP 1 Score: 251 bits (642), Expect = 1.840e-80
Identity = 134/245 (54.69%), Postives = 156/245 (63.67%), Query Frame = 1
Query:   28 CNGRGTCDDCRQVCLCDEGAGASDDDVYAGELRSDCLEYACPTGKAWADGVATDSTYHNLAECSGNGKCDRDKGECSCFSGFSGAACDRNACPEECSGHGQCMSLKELAQTSNALPLSNDTTYGGIYSDSSVMWDSDSFFACVCDSSWDVGLAAGQTQSPEFFGPACSLRRCPSGDDP-ETRADETDCGGVAADGGGGGAGKVGAAGNLCHVDCSNRGLCDHETGLCACFRGYYGDNCGKLSALA 759
            CNG G C+     C C EG GA  D V   +L  DC    CP+G AWAD  +   T H  AECSG G C++  G C C SGFSG AC R  C  +CSGHGQC+S+K++A   NALPLS   TY G+  +++  WD D  + CVCDSSW VGL  GQ Q PE+FGP CSLR CPSGDDP  T  DET+C GV A GG G    VG  GNLC VDC+NRG CD ETG C+C+ G YG +C  LSALA
Sbjct:   24 CNGHGHCEPATDTCDCYEGWGAKTD-VALYKLH-DCSGRTCPSGPAWADVASDSKTAHAPAECSGKGTCNKATGTCKCVSGFSGDACQRFGCLYDCSGHGQCVSMKKMATMPNALPLSKPATYTGL--ETTERWDQDRIYGCVCDSSWPVGLGPGQRQEPEWFGPWCSLRHCPSGDDPYTTHVDETNCTGVTAAGGYG----VGEKGNLCQVDCANRGKCDTETGECSCWTGSYGHDCTLLSALA 260          
BLAST of mRNA_P-wetherbeei_contig9846.1.1 vs. uniprot
Match: W4H3P7_9STRA (EGF-like domain-containing protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=W4H3P7_9STRA)

HSP 1 Score: 251 bits (642), Expect = 2.720e-80
Identity = 127/244 (52.05%), Postives = 157/244 (64.34%), Query Frame = 1
Query:   22 SNCNGRGTCDDCRQVCLCDEGAGASDDDVYAGELRSDCLEYACPTGKAWADGVATDSTYHNLAECSGNGKCDRDKGECSCFSGFSGAACDRNACPEECSGHGQCMSLKELAQTSNALPLSNDTTYGGIYSDSSVMWDSDSFFACVCDSSWDVGLAAGQTQSPEFFGPACSLRRCPSGDDPET-RADETDCGGVAADGGGGGAGKVGAAGNLCHVDCSNRGLCDHETGLCACFRGYYGDNCGKLS 750
            ++C+G G C+   +VC C  G G+  D  +     +DC    CP+G +W       +T H  AECS  G CD   GEC CF GF GAACDR +CP++CSGHG CMS++ LA  S ALPLS  TTYGG    S+  WD D  F CVCDS W VGLA+GQ Q+  +FG  CSL+ CP GDDP T   DE +C GVAA GG G    VGA+GN+C ++CSNRG+CD+ TGLC CF G+YG NCG +S
Sbjct:   36 NDCSGHGKCNTLTKVCTCSNGWGSPSDISH--NKAADCSRRVCPSGASWNSIPTLPTTAHTAAECSDMGVCDTTSGECKCFPGFVGAACDRTSCPKDCSGHGICMSMRALAGVSAALPLSAPTTYGG--QPSTTTWDQDRLFGCVCDSPWAVGLASGQVQASGWFGADCSLQHCPYGDDPVTIGTDELNCTGVAAPGGMG----VGASGNVCFIECSNRGVCDYITGLCTCFEGFYGSNCGTMS 271          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig9846.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FYV5_ECTSI7.680e-9457.96Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7S2AMA5_9STRA2.370e-8854.26Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A5D6XZL0_9STRA6.390e-8753.47EGF-like domain-containing protein n=1 Tax=Pythium... [more]
A0A7S2WUH0_9STRA1.430e-8352.42Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7S1UJF5_9STRA1.630e-8352.92Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
G5A2N6_PHYSP1.600e-8252.03EGF-like domain-containing protein n=4 Tax=Phytoph... [more]
A0A5A8D842_CAFRO5.730e-8250.37Uncharacterized protein n=1 Tax=Cafeteria roenberg... [more]
A0A7S1CQ07_9STRA2.300e-8150.60Hypothetical protein n=1 Tax=Bicosoecida sp. CB-20... [more]
A0A8J2X5G2_9STRA1.840e-8054.69Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
W4H3P7_9STRA2.720e-8052.05EGF-like domain-containing protein n=1 Tax=Aphanom... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig9846contigP-wetherbeei_contig9846:643..2248 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog2880.D7FYV5
PFAMsEGF_2
Model size777
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons4
Evalue1.26e-94
EggNOG OGs2A4YC@1|root,2RY8D@2759|Eukaryota
DescriptionEGF-like domain
Cds size777
COG categoryO
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187112.9452205-CDS-P-wetherbeei_contig9846:642..9961683187112.9452205-CDS-P-wetherbeei_contig9846:642..996Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig9846 643..996 -
1683187112.9581587-CDS-P-wetherbeei_contig9846:1295..14231683187112.9581587-CDS-P-wetherbeei_contig9846:1295..1423Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig9846 1296..1423 -
1683187112.9688537-CDS-P-wetherbeei_contig9846:1709..18621683187112.9688537-CDS-P-wetherbeei_contig9846:1709..1862Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig9846 1710..1862 -
1683187112.979548-CDS-P-wetherbeei_contig9846:2106..22481683187112.979548-CDS-P-wetherbeei_contig9846:2106..2248Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig9846 2107..2248 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig9846.1.1prot_P-wetherbeei_contig9846.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig9846 643..2248 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig9846.1.1

>prot_P-wetherbeei_contig9846.1.1 ID=prot_P-wetherbeei_contig9846.1.1|Name=mRNA_P-wetherbeei_contig9846.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=259bp
QIGSGCPSNCNGRGTCDDCRQVCLCDEGAGASDDDVYAGELRSDCLEYAC
PTGKAWADGVATDSTYHNLAECSGNGKCDRDKGECSCFSGFSGAACDRNA
CPEECSGHGQCMSLKELAQTSNALPLSNDTTYGGIYSDSSVMWDSDSFFA
CVCDSSWDVGLAAGQTQSPEFFGPACSLRRCPSGDDPETRADETDCGGVA
ADGGGGGAGKVGAAGNLCHVDCSNRGLCDHETGLCACFRGYYGDNCGKLS
ALATWEDR*
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mRNA from alignment at P-wetherbeei_contig9846:643..2248-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig9846.1.1 ID=mRNA_P-wetherbeei_contig9846.1.1|Name=mRNA_P-wetherbeei_contig9846.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1606bp|location=Sequence derived from alignment at P-wetherbeei_contig9846:643..2248- (Phaeothamnion wetherbeei SAG_119_79)
CAGATCGGCAGCGGCTGCCCGAGCAACTGCAACGGGCGGGGAACGTGCGA CGATTGCCGGCAGGTGTGCCTCTGCGACGAGGGCGCCGGCGCCAGCGATG ATGACGTCTACGCCGGGGAGCTGCGCAGCGACTGCCTCGAATGTAATGTT TTCATTCCAGTGTGGCAACGCCGGCATTGAGCACTTCCGCTCCTTGATTC TTGCCATGCAACGGTTCCAACTTCTCCTCCAAATAATTCCAGCAATTGCG GCCGCGATCACAGCTGTTGTTAGTACTGCCGCCACATTGCCTCTCTGTAT AAAGACTGCATCATATCGACCCGTTGTCCAGTCCGCCGCCCTTCTGCTTT TTGCTGTTGCCTTGCTGCATCGCGCTTCCGTCGCAGACGCGTGCCCGACG GGGAAGGCGTGGGCGGACGGGGTCGCGACCGATTCGACATACCACAATTT GGCAGAGTGCAGCGGAAACGGGAAATGCGACCGCGATAAGGGCGAATGCT CCTGCTTTTCGGGCTTCTCCGGAGCCGCCTGCGACCGCAGTAAGTGAAAA GAAGGAAGTGCTGGTTTTTCTGTTCGTCTTTCGGGTTCTTTGGAGGTGCA CACCTCTGTTGTGAGAACTGGGGAGAGGGAAGAAAGGAAGGGCGCGCCAA ACCGGCGGCTTCTGAATATGTTAGGCTTGGTTAATTTGCGCCGCCTTTAA GGTGCGAAAACGCCGCTATTGTTCTGACGCATCGCATCCTCTTCTGTAAC CACATTTGGCGATGGCGACTACGATGGCGGCGGTAATGGCCACTGCTTCG GCGGCGGCGGCGGCTGCTGCTGCAGACGCATGCCCGGAGGAGTGCTCCGG CCACGGGCAGTGCATGTCTTTGAAGGAGCTCGCACAGACATCTAACGCGC TGCCCCTCTCCAACGATACGACATACGGAGGCATTTACAGCGACAGCAGC GTGGTGAGGGACTTTTGACGGATATTTCGAATCTAGTAACGTTCAGTTTC AGGTATGGCGCCGTTTCACCTTCATCGCACAAGCACAGCATGCTGGTCAC CGCTGCTGCTGCTGCTGCTGGCAAAAGACGATTAGCGCCTTTTTTCCTCT GCGTCCTTTCCGCCGCCTTTTATTGCCGCCACCGCCATCCGTCGCTCTCA CTTTCGCAATATTTGCTCCTTCCCCCAACTGAATTCCTCGCTGTCGCCTT TTTGACCCCAAGAGCGCACCTACATCCCCTGCCCGGCCGCCTCTTGCTGC AGATGTGGGACAGCGACAGTTTCTTTGCCTGCGTCTGCGACAGCTCGTGG GACGTCGGCCTCGCCGCCGGTCAAACGCAGTCCCCCGAATTCTTCGGCCC GGCCTGCTCCCTCCGCCGTTGCCCCTCCGGCGACGACCCCGAGACGCGCG CTGACGAGACCGACTGCGGCGGCGTCGCGGCGGACGGCGGGGGTGGCGGC GCCGGGAAGGTCGGGGCGGCGGGTAACCTGTGTCACGTGGACTGCAGCAA CCGGGGGCTGTGCGATCACGAGACCGGGTTGTGCGCTTGCTTCCGGGGCT ACTACGGGGATAACTGCGGCAAACTGTCGGCGCTCGCCACTTGGGAGGAT AGATGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig9846:643..2248-

>mRNA_P-wetherbeei_contig9846.1.1 ID=mRNA_P-wetherbeei_contig9846.1.1|Name=mRNA_P-wetherbeei_contig9846.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=777bp|location=Sequence derived from alignment at P-wetherbeei_contig9846:643..2248- (Phaeothamnion wetherbeei SAG_119_79)
CAGATCGGCAGCGGCTGCCCGAGCAACTGCAACGGGCGGGGAACGTGCGA
CGATTGCCGGCAGGTGTGCCTCTGCGACGAGGGCGCCGGCGCCAGCGATG
ATGACGTCTACGCCGGGGAGCTGCGCAGCGACTGCCTCGAATACGCGTGC
CCGACGGGGAAGGCGTGGGCGGACGGGGTCGCGACCGATTCGACATACCA
CAATTTGGCAGAGTGCAGCGGAAACGGGAAATGCGACCGCGATAAGGGCG
AATGCTCCTGCTTTTCGGGCTTCTCCGGAGCCGCCTGCGACCGCAACGCA
TGCCCGGAGGAGTGCTCCGGCCACGGGCAGTGCATGTCTTTGAAGGAGCT
CGCACAGACATCTAACGCGCTGCCCCTCTCCAACGATACGACATACGGAG
GCATTTACAGCGACAGCAGCGTGATGTGGGACAGCGACAGTTTCTTTGCC
TGCGTCTGCGACAGCTCGTGGGACGTCGGCCTCGCCGCCGGTCAAACGCA
GTCCCCCGAATTCTTCGGCCCGGCCTGCTCCCTCCGCCGTTGCCCCTCCG
GCGACGACCCCGAGACGCGCGCTGACGAGACCGACTGCGGCGGCGTCGCG
GCGGACGGCGGGGGTGGCGGCGCCGGGAAGGTCGGGGCGGCGGGTAACCT
GTGTCACGTGGACTGCAGCAACCGGGGGCTGTGCGATCACGAGACCGGGT
TGTGCGCTTGCTTCCGGGGCTACTACGGGGATAACTGCGGCAAACTGTCG
GCGCTCGCCACTTGGGAGGATAGATGA
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