mRNA_P-wetherbeei_contig9821.3.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig9821.3.1
Unique NamemRNA_P-wetherbeei_contig9821.3.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig9821.3.1 vs. uniprot
Match: A0A140GV65_9HYPH (Gmp synthase-glutamine amidotransferase domain protein n=1 Tax=Rhodoplanes sp. Z2-YC6860 TaxID=674703 RepID=A0A140GV65_9HYPH)

HSP 1 Score: 127 bits (318), Expect = 1.440e-35
Identity = 70/116 (60.34%), Postives = 89/116 (76.72%), Query Frame = 1
Query:    7 RKIVTAVILVPIALIIVMFAVANREIITVTFDPFDSKNPAFALTLPLFMLVFVLVGLGILIGGMAAWLKQHKWRVRARRAEADERRLRTELDAQRARSVQPVVEHP--PLILPPAA 348
            RK ++A+ILVP+ ++IVMFAVANRE+ITV+FDPF + +PAFA+ +PL+ L+F LV LG+L+GG+A+WLKQ KWR RARRAEA+ R LR  LDA   R   PV       LILPPAA
Sbjct:    2 RKFLSALILVPLGIVIVMFAVANREVITVSFDPFATVSPAFAVKVPLYGLIFALVALGVLVGGIASWLKQQKWRTRARRAEAEARELRARLDALEPRRPMPVPRDTGTSLILPPAA 117          
BLAST of mRNA_P-wetherbeei_contig9821.3.1 vs. uniprot
Match: A0A345ZZK2_9HYPH (LapA family protein n=1 Tax=Pseudolabrys taiwanensis TaxID=331696 RepID=A0A345ZZK2_9HYPH)

HSP 1 Score: 126 bits (317), Expect = 2.040e-35
Identity = 72/116 (62.07%), Postives = 88/116 (75.86%), Query Frame = 1
Query:    4 FRKIVTAVILVPIALIIVMFAVANREIITVTFDPFDSKNPAFALTLPLFMLVFVLVGLGILIGGMAAWLKQHKWRVRARRAEADERRLRTELDAQRAR-SVQPVVEHPPLILPPAA 348
            FRKIVTA+I+VP+ALI++ FAVANR+ +TV+FDPF S NPAFA TLPLF+LVFVLV  G++IGG AAWL+Q KWR  A R +AD R L  EL+A R R +  P     P+I PPAA
Sbjct:    2 FRKIVTAIIVVPLALILIAFAVANRQFVTVSFDPFSSANPAFAATLPLFILVFVLVIFGVVIGGAAAWLRQAKWRRVAHRLDADVRALHQELEALRRRETAAPAASRYPVIPPPAA 117          
BLAST of mRNA_P-wetherbeei_contig9821.3.1 vs. uniprot
Match: A0A1Q4D9W1_9HYPH (LapA_dom domain-containing protein n=1 Tax=Rhizobiales bacterium 64-17 TaxID=1895814 RepID=A0A1Q4D9W1_9HYPH)

HSP 1 Score: 113 bits (282), Expect = 4.920e-30
Identity = 60/119 (50.42%), Postives = 86/119 (72.27%), Query Frame = 1
Query:    7 RKIVTAVILVPIALIIVMFAVANREIITVTFDPFDSKNPAFALTLPLFMLVFVLVGLGILIGGMAAWLKQHKWRVRARRAEADERRLRTELDAQRARSV--------QPVVEHPPLILP 339
            RK + A+IL+PI L++VMFAVANR+++T++FDPFD+ NPA+A+ +PLF+L+FVLV LG+L+GG+AAWL+Q +WR  ARR +   RRL  E+   R R +        QPV    P++ P
Sbjct:    3 RKALAAIILIPIVLLLVMFAVANRQVVTLSFDPFDAANPAYAVAVPLFVLIFVLVVLGVLLGGVAAWLRQSRWRRAARRLDGQMRRLNDEVHELRRREMERKSQPNSQPVAPSVPMLPP 121          
BLAST of mRNA_P-wetherbeei_contig9821.3.1 vs. uniprot
Match: A0A534C3H3_9GAMM (DUF1049 domain-containing protein n=1 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A534C3H3_9GAMM)

HSP 1 Score: 114 bits (284), Expect = 8.090e-30
Identity = 65/122 (53.28%), Postives = 87/122 (71.31%), Query Frame = 1
Query:    7 RKIVTAVILVPIALIIVMFAVANREIITVTFDPFDSKNPAFALTLPLFMLVFVLVGLGILIGGMAAWLKQHKWRVRARRAEADERRLRTELDAQR--ARSVQPVVEHPP------LILPPAA 348
            RKIV+A+ILVP+A++++ FAVANR+I+ V+ DPFD  +PA A+ LPLF L+  L+  G+++GG+AAWLKQHKWR  ARRAE + RRLR E+DA R    + QP    PP      L +PP A
Sbjct:   42 RKIVSALILVPLAIVLITFAVANRQIVIVSLDPFDQAHPAVAVALPLFALILALIIGGVVVGGIAAWLKQHKWRRAARRAEDEARRLRAEVDALRRGGPTSQPSTPSPPVDYAPRLTIPPPA 163          
BLAST of mRNA_P-wetherbeei_contig9821.3.1 vs. uniprot
Match: A0A0Q7TRQ0_9HYPH (LapA_dom domain-containing protein n=1 Tax=Pseudolabrys sp. Root1462 TaxID=1736466 RepID=A0A0Q7TRQ0_9HYPH)

HSP 1 Score: 110 bits (276), Expect = 6.160e-29
Identity = 59/100 (59.00%), Postives = 76/100 (76.00%), Query Frame = 1
Query:    4 FRKIVTAVILVPIALIIVMFAVANREIITVTFDPFDSKNPAFALTLPLFMLVFVLVGLGILIGGMAAWLKQHKWRVRARRAEADERRLRTELDAQRARSV 303
            FRKIVT VILVP+A +I+ FAVANR  +TV+FDPF S NPA++ T+PLF+L+F+LV LG+++GG AAWL+Q  WR  AR+ + D R L  EL A R R V
Sbjct:    2 FRKIVTLVILVPLAAVIIAFAVANRHGVTVSFDPFSSANPAYSATVPLFVLIFILVVLGVVVGGAAAWLRQAHWRRAARKLDGDNRHLLQELSAVRERLV 101          
BLAST of mRNA_P-wetherbeei_contig9821.3.1 vs. uniprot
Match: A0A6L5FGY6_9HYPH (DUF1049 domain-containing protein n=1 Tax=Hyphomicrobiales bacterium TaxID=1909294 RepID=A0A6L5FGY6_9HYPH)

HSP 1 Score: 108 bits (269), Expect = 5.040e-28
Identity = 54/97 (55.67%), Postives = 75/97 (77.32%), Query Frame = 1
Query:    7 RKIVTAVILVPIALIIVMFAVANREIITVTFDPFDSKNPAFALTLPLFMLVFVLVGLGILIGGMAAWLKQHKWRVRARRAEADERRLRTELDAQRAR 297
            R IV AVIL+P+A++I+ FAVANR+ +T++FDPFD+  PA++ TLPLF+++F+LV  G+L+GG+AAWL+Q KWR  ARRAE   R L  E+   R R
Sbjct:    3 RTIVVAVILIPLAIVIIGFAVANRQAVTISFDPFDASQPAYSTTLPLFVVIFLLVIFGVLVGGIAAWLRQSKWRSAARRAETQNRELTAEVTMLRRR 99          
BLAST of mRNA_P-wetherbeei_contig9821.3.1 vs. uniprot
Match: UPI0010BE2623 (LapA family protein n=1 Tax=Pseudolabrys sp. FHR47 TaxID=2562284 RepID=UPI0010BE2623)

HSP 1 Score: 107 bits (268), Expect = 1.000e-27
Identity = 57/99 (57.58%), Postives = 74/99 (74.75%), Query Frame = 1
Query:    7 RKIVTAVILVPIALIIVMFAVANREIITVTFDPFDSKNPAFALTLPLFMLVFVLVGLGILIGGMAAWLKQHKWRVRARRAEADERRLRTELDAQRARSV 303
            RKI   +I+VP+A +I+ FAVANR  +TV FDPF + NPA+A T+PLF+L+FVLV LG+++GG AAWL+Q KWR  ARR + + RRL  EL A R R V
Sbjct:    3 RKIAILIIVVPLAALIIAFAVANRHAVTVAFDPFSAANPAYAATVPLFVLIFVLVILGVIVGGAAAWLRQAKWRRVARRLDGENRRLLQELSAARERLV 101          
BLAST of mRNA_P-wetherbeei_contig9821.3.1 vs. uniprot
Match: A0A1Q7B5Y6_9PROT (LapA_dom domain-containing protein n=2 Tax=unclassified Alphaproteobacteria TaxID=33807 RepID=A0A1Q7B5Y6_9PROT)

HSP 1 Score: 104 bits (259), Expect = 1.610e-26
Identity = 58/121 (47.93%), Postives = 83/121 (68.60%), Query Frame = 1
Query:    7 RKIVTAVILVPIALIIVMFAVANREIITVTFDPFDSKNPAFALTLPLFMLVFVLVGLGILIGGMAAWLKQHKWRVRARRAEADERRLRTELDAQRARSVQPVVEHP-------PLILPPAA 348
            R+IVTA+ILVP+A++++  AVANR+ + V+FDPFD  +PA    LPL++L+ +L+  G+L+GG+AAWL+Q +WR  AR A+A  R LR E+D  R R   P+  HP       PL +PP A
Sbjct:    3 RRIVTALILVPLAILLISLAVANRQSVIVSFDPFDPAHPALTRALPLYVLMLMLLTGGVLVGGIAAWLRQGRWRRAARLADAQARELRVEVDRLRRRLGSPLPAHPLPADAAPPLTIPPPA 123          
BLAST of mRNA_P-wetherbeei_contig9821.3.1 vs. uniprot
Match: A0A371B9C7_9HYPH (LapA family protein n=1 Tax=Pseudolabrys sp. GY_H TaxID=2292256 RepID=A0A371B9C7_9HYPH)

HSP 1 Score: 104 bits (260), Expect = 1.640e-26
Identity = 53/99 (53.54%), Postives = 76/99 (76.77%), Query Frame = 1
Query:    7 RKIVTAVILVPIALIIVMFAVANREIITVTFDPFDSKNPAFALTLPLFMLVFVLVGLGILIGGMAAWLKQHKWRVRARRAEADERRLRTELDAQRARSV 303
            RKIVT +++VP+A +I+ FAVANR  +TV+FDPF + +PA+A T+PLF+L+F+LV LG+++GG AAWL+Q +WR  ARR + + RRL  EL   R + V
Sbjct:    3 RKIVTLIVVVPLAAVIIAFAVANRHAVTVSFDPFSAASPAYAATVPLFVLIFILVILGVVVGGAAAWLRQSQWRRVARRLDGENRRLLHELSVAREQLV 101          
BLAST of mRNA_P-wetherbeei_contig9821.3.1 vs. uniprot
Match: A0A6N7GM78_9HYPH (DUF1049 domain-containing protein n=1 Tax=Hyphomicrobiales bacterium TaxID=1909294 RepID=A0A6N7GM78_9HYPH)

HSP 1 Score: 102 bits (254), Expect = 8.950e-26
Identity = 54/97 (55.67%), Postives = 73/97 (75.26%), Query Frame = 1
Query:    7 RKIVTAVILVPIALIIVMFAVANREIITVTFDPFDSKNPAFALTLPLFMLVFVLVGLGILIGGMAAWLKQHKWRVRARRAEADERRLRTELDAQRAR 297
            RKIV A+IL+P+A+++V FAVANR+ +TV+FDPF+   PA +L LPL+ L+  LV  G+++GG AAW++Q KWR RAR AEA  R LRTE D  + R
Sbjct:    2 RKIVRALILIPLAIVLVAFAVANRQAVTVSFDPFNPAEPAVSLMLPLYALILALVIAGVILGGAAAWMRQGKWRGRAREAEARARELRTENDQLKRR 98          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig9821.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A140GV65_9HYPH1.440e-3560.34Gmp synthase-glutamine amidotransferase domain pro... [more]
A0A345ZZK2_9HYPH2.040e-3562.07LapA family protein n=1 Tax=Pseudolabrys taiwanens... [more]
A0A1Q4D9W1_9HYPH4.920e-3050.42LapA_dom domain-containing protein n=1 Tax=Rhizobi... [more]
A0A534C3H3_9GAMM8.090e-3053.28DUF1049 domain-containing protein n=1 Tax=Gammapro... [more]
A0A0Q7TRQ0_9HYPH6.160e-2959.00LapA_dom domain-containing protein n=1 Tax=Pseudol... [more]
A0A6L5FGY6_9HYPH5.040e-2855.67DUF1049 domain-containing protein n=1 Tax=Hyphomic... [more]
UPI0010BE26231.000e-2757.58LapA family protein n=1 Tax=Pseudolabrys sp. FHR47... [more]
A0A1Q7B5Y6_9PROT1.610e-2647.93LapA_dom domain-containing protein n=2 Tax=unclass... [more]
A0A371B9C7_9HYPH1.640e-2653.54LapA family protein n=1 Tax=Pseudolabrys sp. GY_H ... [more]
A0A6N7GM78_9HYPH8.950e-2655.67DUF1049 domain-containing protein n=1 Tax=Hyphomic... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig9821contigP-wetherbeei_contig9821:2081..2431 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog224911.27348992
PFAMsLapA_dom
Model size351
Max annot lvl28211|Alphaproteobacteria
Hectar predicted targeting categorysignal anchor
Exons1
Evalue2.91e-25
EggNOG OGsCOG5416@1|root,COG5416@2|Bacteria,1N7CU@1224|Proteobacteria,2UF9B@28211|Alphaproteobacteria,3JYSJ@41294|Bradyrhizobiaceae
DescriptionLipopolysaccharide assembly protein A domain
Cds size351
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187112.2023306-CDS-P-wetherbeei_contig9821:2080..24311683187112.2023306-CDS-P-wetherbeei_contig9821:2080..2431Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig9821 2081..2431 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig9821.3.1prot_P-wetherbeei_contig9821.3.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig9821 2081..2431 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig9821.3.1

>prot_P-wetherbeei_contig9821.3.1 ID=prot_P-wetherbeei_contig9821.3.1|Name=mRNA_P-wetherbeei_contig9821.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=117bp
VFRKIVTAVILVPIALIIVMFAVANREIITVTFDPFDSKNPAFALTLPLF
MLVFVLVGLGILIGGMAAWLKQHKWRVRARRAEADERRLRTELDAQRARS
VQPVVEHPPLILPPAA*
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mRNA from alignment at P-wetherbeei_contig9821:2081..2431-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig9821.3.1 ID=mRNA_P-wetherbeei_contig9821.3.1|Name=mRNA_P-wetherbeei_contig9821.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=351bp|location=Sequence derived from alignment at P-wetherbeei_contig9821:2081..2431- (Phaeothamnion wetherbeei SAG_119_79)
GTGTTTCGCAAAATCGTCACCGCCGTCATCCTGGTTCCGATCGCGCTCAT CATCGTGATGTTCGCGGTGGCGAATCGCGAGATCATCACGGTGACGTTCG ACCCGTTCGATTCCAAGAATCCGGCCTTCGCGCTGACCTTGCCGCTGTTT ATGCTGGTGTTCGTGCTGGTCGGCCTCGGCATCCTGATCGGCGGCATGGC GGCCTGGCTCAAGCAGCACAAATGGCGCGTGCGCGCTCGTCGCGCAGAGG CTGACGAACGGCGGCTGCGCACCGAACTTGATGCTCAGCGCGCGCGGTCC GTTCAGCCCGTCGTCGAGCATCCGCCGCTGATCCTCCCGCCGGCAGCGTG A
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Coding sequence (CDS) from alignment at P-wetherbeei_contig9821:2081..2431-

>mRNA_P-wetherbeei_contig9821.3.1 ID=mRNA_P-wetherbeei_contig9821.3.1|Name=mRNA_P-wetherbeei_contig9821.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=351bp|location=Sequence derived from alignment at P-wetherbeei_contig9821:2081..2431- (Phaeothamnion wetherbeei SAG_119_79)
GTGTTTCGCAAAATCGTCACCGCCGTCATCCTGGTTCCGATCGCGCTCAT
CATCGTGATGTTCGCGGTGGCGAATCGCGAGATCATCACGGTGACGTTCG
ACCCGTTCGATTCCAAGAATCCGGCCTTCGCGCTGACCTTGCCGCTGTTT
ATGCTGGTGTTCGTGCTGGTCGGCCTCGGCATCCTGATCGGCGGCATGGC
GGCCTGGCTCAAGCAGCACAAATGGCGCGTGCGCGCTCGTCGCGCAGAGG
CTGACGAACGGCGGCTGCGCACCGAACTTGATGCTCAGCGCGCGCGGTCC
GTTCAGCCCGTCGTCGAGCATCCGCCGCTGATCCTCCCGCCGGCAGCGTG
A
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