mRNA_P-wetherbeei_contig980.3.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig980.3.1
Unique NamemRNA_P-wetherbeei_contig980.3.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig980.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig980contigP-wetherbeei_contig980:5891..6497 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size607
Hectar predicted targeting categorymitochondrion
Exons1
Cds size450
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187111.197098-CDS-P-wetherbeei_contig980:5890..63401683187111.197098-CDS-P-wetherbeei_contig980:5890..6340Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig980 5891..6340 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187111.2083879-UTR-P-wetherbeei_contig980:6340..64971683187111.2083879-UTR-P-wetherbeei_contig980:6340..6497Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig980 6341..6497 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig980.3.1prot_P-wetherbeei_contig980.3.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig980 5891..6340 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig980.3.1

>prot_P-wetherbeei_contig980.3.1 ID=prot_P-wetherbeei_contig980.3.1|Name=mRNA_P-wetherbeei_contig980.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=150bp
MWLCVPAHRRPIAFATCVPAPACRRCRAGQCGTGAPGRARGNHGGEAASH
SICGGGGGDNCPSMQTTVAVAAVGVVDAEVAAVVAGDPDARRHSLHGFSC
VQGLPSLRQRRLAGRNCLGVPPVKDVDTLLDIGRALSHMCVLMSSCSGR*
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mRNA from alignment at P-wetherbeei_contig980:5891..6497-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig980.3.1 ID=mRNA_P-wetherbeei_contig980.3.1|Name=mRNA_P-wetherbeei_contig980.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=607bp|location=Sequence derived from alignment at P-wetherbeei_contig980:5891..6497- (Phaeothamnion wetherbeei SAG_119_79)
CCAGCAACAAAAGTGGTCGCAACGGTAGTCATGGCAACGGCGACCCGCGT
CATTGAGGTCACTGACAGTGACCACAGTGCAAATGCCGCCGCGGTAAGGA
GGCGGCTGTTAGCGGCGACGGCGCTGCCTGTGGCGACTGCCGTGAGACAT
CGCATACATGTGGCTTTGTGTTCCTGCTCACAGGCGACCGATCGCTTTCG
CAACCTGTGTGCCTGCGCCAGCTTGCAGGCGGTGCCGCGCCGGACAATGC
GGCACAGGCGCACCGGGCCGAGCTCGCGGCAACCACGGCGGCGAAGCGGC
AAGTCATTCGATCTGTGGTGGCGGCGGCGGTGACAACTGCCCGTCGATGC
AAACGACGGTGGCGGTGGCAGCAGTGGGAGTGGTGGACGCGGAGGTTGCA
GCGGTTGTGGCAGGTGATCCGGACGCACGGCGGCACTCCCTACACGGGTT
TAGCTGTGTTCAGGGATTGCCATCGCTGCGACAAAGAAGGCTGGCTGGCA
GAAATTGCCTCGGCGTCCCACCAGTGAAAGATGTAGATACGCTATTGGAT
ATCGGGCGTGCGTTGTCGCATATGTGCGTGCTAATGTCATCTTGTTCGGG
CCGATAG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig980:5891..6497-

>mRNA_P-wetherbeei_contig980.3.1 ID=mRNA_P-wetherbeei_contig980.3.1|Name=mRNA_P-wetherbeei_contig980.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=450bp|location=Sequence derived from alignment at P-wetherbeei_contig980:5891..6497- (Phaeothamnion wetherbeei SAG_119_79)
ATGTGGCTTTGTGTTCCTGCTCACAGGCGACCGATCGCTTTCGCAACCTG
TGTGCCTGCGCCAGCTTGCAGGCGGTGCCGCGCCGGACAATGCGGCACAG
GCGCACCGGGCCGAGCTCGCGGCAACCACGGCGGCGAAGCGGCAAGTCAT
TCGATCTGTGGTGGCGGCGGCGGTGACAACTGCCCGTCGATGCAAACGAC
GGTGGCGGTGGCAGCAGTGGGAGTGGTGGACGCGGAGGTTGCAGCGGTTG
TGGCAGGTGATCCGGACGCACGGCGGCACTCCCTACACGGGTTTAGCTGT
GTTCAGGGATTGCCATCGCTGCGACAAAGAAGGCTGGCTGGCAGAAATTG
CCTCGGCGTCCCACCAGTGAAAGATGTAGATACGCTATTGGATATCGGGC
GTGCGTTGTCGCATATGTGCGTGCTAATGTCATCTTGTTCGGGCCGATAG
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