mRNA_P-wetherbeei_contig98.4.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig98.4.1
Unique NamemRNA_P-wetherbeei_contig98.4.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig98.4.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig98contigP-wetherbeei_contig98:4781..5702 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size794
Hectar predicted targeting categoryother localisation
Exons2
Cds size447
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187110.9281833-UTR-P-wetherbeei_contig98:4780..49601683187110.9281833-UTR-P-wetherbeei_contig98:4780..4960Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig98 4781..4960 -
1683187110.9451358-UTR-P-wetherbeei_contig98:5407..55141683187110.9451358-UTR-P-wetherbeei_contig98:5407..5514Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig98 5408..5514 -
1683187110.95314-UTR-P-wetherbeei_contig98:5642..57021683187110.95314-UTR-P-wetherbeei_contig98:5642..5702Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig98 5643..5702 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187110.937032-CDS-P-wetherbeei_contig98:4960..54071683187110.937032-CDS-P-wetherbeei_contig98:4960..5407Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig98 4961..5407 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig98.4.1prot_P-wetherbeei_contig98.4.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig98 4961..5407 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig98.4.1

>prot_P-wetherbeei_contig98.4.1 ID=prot_P-wetherbeei_contig98.4.1|Name=mRNA_P-wetherbeei_contig98.4.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=149bp
MAPKDHNRLTALPTAPNTPKTEELGQNGFHQIDDLLLPRSGAAPADAKLG
HHPVQRVRQRRLRRPQRLPSRELLGCCDVAPADGVPNLLERELHRVGGRE
PQPATAVHLQQNAPGCRLRLRVDRVHARLPHDDGGLLRPVQGHGHQVQ*
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mRNA from alignment at P-wetherbeei_contig98:4781..5702-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig98.4.1 ID=mRNA_P-wetherbeei_contig98.4.1|Name=mRNA_P-wetherbeei_contig98.4.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=922bp|location=Sequence derived from alignment at P-wetherbeei_contig98:4781..5702- (Phaeothamnion wetherbeei SAG_119_79)
GGTGGCGGTTGCGCTCAACTCGAACAGCGCCGTTGTGAGAGCGGGAAGGA
AGACGGGGGACTTGATTGCACACATCGTGGTTTCGATAGAGGCGGGGAAC
GGTAAAAGAGTGATTTTAAGAGCCGAATATTGCGTGTGGAGATTTGGTTT
GAGTGAGGGACGTGGGCAGCCCTCGTTTCCGACTTTACCTTCTTCGGCTC
AATGGTTCCAGGTTTTTTCCAGGATTGCTTTGCGCGGAAGGAAAGTGGAA
CCAAAAGACACCACATCGCGATTACTTCGCGTTGGAGATGAAGTAATGGC
GCCCAAGGACCACAATCGACTCACTGCACTCCCAACAGCTCCAAACACTC
CAAAAACCGAAGAACTCGGACAAAATGGCTTCCACCAAATCGACGATCTT
TTGCTGCCTCGCAGCGGCGCTGCTCCTGCTGACGCCAAGCTCGGCCACCA
TCCAGTGCAGCGCGTCCGTCAACGGCGCCTGCGCCGACCCCAGCGGCTGC
CATCACGAGAACTCTTGGGATGCTGCGACGTCGCGCCAGCGGACGGAGTG
CCTAACCTGCTTGAGCGCGAGCTCCATCGCGTGGGAGGGCGAGAACCGCA
ACCCGCAACCGCGGTGCATCTACAACAAAACGCTCCTGGGTGTCGCCTGC
GACTCCGCGTGGATCGCGTACACGCTCGGCTCCCGCACGACGACGGCGGC
CTGCTACGACCAGTGCAAGGGCACGGGCATCAAGTACAATAGCTGCGGCA
ACCCCGTCGGCTGCGCTTGAACCAAAGTTGGGGTAGAAGGAAGCCAATGC
ACAAACTGGCTGTAGAAAGAAGGAGACGTGGGCTATTATCGGATGCTGCC
TGGTAGAGTGTTGCCGTGGCAAGAGCACAAGCCGCAGTGGGGCAGTCGAC
CTCTGACGTTCAACAACAGAAG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig98:4781..5702-

>mRNA_P-wetherbeei_contig98.4.1 ID=mRNA_P-wetherbeei_contig98.4.1|Name=mRNA_P-wetherbeei_contig98.4.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=447bp|location=Sequence derived from alignment at P-wetherbeei_contig98:4781..5702- (Phaeothamnion wetherbeei SAG_119_79)
ATGGCGCCCAAGGACCACAATCGACTCACTGCACTCCCAACAGCTCCAAA
CACTCCAAAAACCGAAGAACTCGGACAAAATGGCTTCCACCAAATCGACG
ATCTTTTGCTGCCTCGCAGCGGCGCTGCTCCTGCTGACGCCAAGCTCGGC
CACCATCCAGTGCAGCGCGTCCGTCAACGGCGCCTGCGCCGACCCCAGCG
GCTGCCATCACGAGAACTCTTGGGATGCTGCGACGTCGCGCCAGCGGACG
GAGTGCCTAACCTGCTTGAGCGCGAGCTCCATCGCGTGGGAGGGCGAGAA
CCGCAACCCGCAACCGCGGTGCATCTACAACAAAACGCTCCTGGGTGTCG
CCTGCGACTCCGCGTGGATCGCGTACACGCTCGGCTCCCGCACGACGACG
GCGGCCTGCTACGACCAGTGCAAGGGCACGGGCATCAAGTACAATAG
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