mRNA_P-wetherbeei_contig9797.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig9797.1.1
Unique NamemRNA_P-wetherbeei_contig9797.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig9797.1.1 vs. uniprot
Match: A0A835Z6M5_9STRA (CAB/ELIP/HLIP superfamily of protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z6M5_9STRA)

HSP 1 Score: 206 bits (524), Expect = 1.100e-64
Identity = 96/146 (65.75%), Postives = 123/146 (84.25%), Query Frame = 1
Query:   55 LFEGAQAEFASDFPLFAKYGWGPSTKAERWNGRHAMAGWVVIVATGYAKAHGLIPNPDMLLDVKQWGTLATISGATAISNERAIIMVAHMHLLMMSICSAIAPLSFQDTLLLKEGEKDEPAPGLIPAFVPGLTKEAEMSNGRMAML 492
            +F  A   F+ D+P F K GWGP+TKAERWNGRHAM GWV+IVATGYAKAHGLIP+P++ L++K+WGTL+ ++G   ISNERA++++A++H L MS+C+A APLSFQD LL+ +G+KDEPA GLIPA VPGLTKEAE+ NGR+AML
Sbjct:   45 VFTDATEAFSKDYPDFYKAGWGPTTKAERWNGRHAMFGWVLIVATGYAKAHGLIPDPEVALNLKEWGTLSILAGPQTISNERAVVLIANVHALFMSLCAAFAPLSFQDPLLIPKGQKDEPAAGLIPAIVPGLTKEAELLNGRLAML 190          
BLAST of mRNA_P-wetherbeei_contig9797.1.1 vs. uniprot
Match: D7FTS3_ECTSI (CAB/ELIP/HLIP superfamily of protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FTS3_ECTSI)

HSP 1 Score: 201 bits (510), Expect = 1.880e-62
Identity = 96/148 (64.86%), Postives = 118/148 (79.73%), Query Frame = 1
Query:   55 LFEGAQAEFASDFPLFAKYGWGPSTKAERWNGRHAMAGWVVIVATGYAKAHGLIPNPDMLLDVKQWGTLATISGATAISNERAIIMVAHMHLLMMSICSAIAPLSFQDTLLLK--EGEKDEPAPGLIPAFVPGLTKEAEMSNGRMAML 492
            +F+ AQAEFA++FP ++KYGWGP+ KAERWNGRHAM GW  I+ATGY +AH LIP+ D+ LD K WGTLA  +G   I+NERAIIM+ H+H L +S+C+ +APLSFQD L L    GEKD PAPGLIP+FVPGLT EAE+ NGRMAM+
Sbjct:   52 VFDNAQAEFAAEFPEYSKYGWGPTAKAERWNGRHAMFGWAAIIATGYCQAHNLIPDADVALDPKVWGTLAYTTGTETITNERAIIMMGHVHALAVSVCATVAPLSFQDKLFLDVDAGEKDAPAPGLIPSFVPGLTPEAEIFNGRMAMM 199          
BLAST of mRNA_P-wetherbeei_contig9797.1.1 vs. uniprot
Match: A0A6U4CWQ9_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A6U4CWQ9_9STRA)

HSP 1 Score: 201 bits (510), Expect = 2.490e-62
Identity = 101/157 (64.33%), Postives = 122/157 (77.71%), Query Frame = 1
Query:   22 AANGVQMFSPALFEGAQAEFASDFPLFAKYGWGPSTKAERWNGRHAMAGWVVIVATGYAKAHGLIPNPDMLLDVKQWGTLATISGATAISNERAIIMVAHMHLLMMSICSAIAPLSFQDTLLLKEGEKDEPAPGLIPAFVPGLTKEAEMSNGRMAML 492
            A  GVQM   ++F+ A  +F   FP F + GWGP+TKAERWNGRHAM GWV IVATGYA+AHGLIP+ D  LD+K+WGTLA I+G T I+N RA+I++ H+H LMMS+C+ IAPLSFQD L L+EGE DEPA GLIPA   GLTK AE+ NGR+AML
Sbjct:   53 ARRGVQM---SVFDDATTDFGKQFPEFYQLGWGPTTKAERWNGRHAMFGWVAIVATGYAQAHGLIPDFDKPLDLKEWGTLAIIAGKTTITNGRAVILIGHIHALMMSVCATIAPLSFQDKLFLEEGEADEPAAGLIPAMDTGLTKSAELWNGRVAML 206          
BLAST of mRNA_P-wetherbeei_contig9797.1.1 vs. uniprot
Match: A0A6U4CP98_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A6U4CP98_9STRA)

HSP 1 Score: 200 bits (509), Expect = 1.700e-61
Identity = 100/154 (64.94%), Postives = 121/154 (78.57%), Query Frame = 1
Query:   31 GVQMFSPALFEGAQAEFASDFPLFAKYGWGPSTKAERWNGRHAMAGWVVIVATGYAKAHGLIPNPDMLLDVKQWGTLATISGATAISNERAIIMVAHMHLLMMSICSAIAPLSFQDTLLLKEGEKDEPAPGLIPAFVPGLTKEAEMSNGRMAML 492
            GVQM   ++F+ A  +F   FP F + GWGP+TKAERWNGRHAM GWV IVATGYA+AHGLIP+ D  LD+K+WGTLA I+G T I+N RA+I++ H+H LMMS+C+ IAPLSFQD L L+EGE DEPA GLIPA   GLTK AE+ NGR+AML
Sbjct:  108 GVQM---SVFDDATTDFGKQFPEFYQLGWGPTTKAERWNGRHAMFGWVAIVATGYAQAHGLIPDFDKPLDLKEWGTLAIIAGKTTITNGRAVILIGHIHALMMSVCATIAPLSFQDKLFLEEGEADEPAAGLIPAMDTGLTKSAELWNGRVAML 258          
BLAST of mRNA_P-wetherbeei_contig9797.1.1 vs. uniprot
Match: A0A7S2MHN0_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2MHN0_9STRA)

HSP 1 Score: 196 bits (498), Expect = 1.030e-60
Identity = 95/146 (65.07%), Postives = 115/146 (78.77%), Query Frame = 1
Query:   55 LFEGAQAEFASDFPLFAKYGWGPSTKAERWNGRHAMAGWVVIVATGYAKAHGLIPNPDMLLDVKQWGTLATISGATAISNERAIIMVAHMHLLMMSICSAIAPLSFQDTLLLKEGEKDEPAPGLIPAFVPGLTKEAEMSNGRMAML 492
            +F  A  EFA+D+P+ AKYGWGPSTKAERWNGRHAM GW  IV TGY +AH LIP+ D LLD+K+WGTLATISG   ISNERAII++AH+H LM+S+C+ +AP+   DTLLL+ GE DEPA G+ P F  GLT  AE+ NGRMAM+
Sbjct:   48 VFTDATTEFANDYPMMAKYGWGPSTKAERWNGRHAMFGWFAIVCTGYCQAHHLIPDADKLLDLKEWGTLATISGKATISNERAIILIAHVHALMVSVCATMAPM--MDTLLLEPGEADEPAAGVFPPFETGLTSAAELWNGRMAMM 191          
BLAST of mRNA_P-wetherbeei_contig9797.1.1 vs. uniprot
Match: A0A7S1BP97_9STRA (Hypothetical protein n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1BP97_9STRA)

HSP 1 Score: 197 bits (500), Expect = 1.290e-60
Identity = 97/155 (62.58%), Postives = 120/155 (77.42%), Query Frame = 1
Query:   28 NGVQMFSPALFEGAQAEFASDFPLFAKYGWGPSTKAERWNGRHAMAGWVVIVATGYAKAHGLIPNPDMLLDVKQWGTLATISGATAISNERAIIMVAHMHLLMMSICSAIAPLSFQDTLLLKEGEKDEPAPGLIPAFVPGLTKEAEMSNGRMAML 492
            +G  + S A+FE A  E+ +++P FAK+GWGPSTKAERWNGRHAM GW VIVA+ YA  H LIPN DM LD+KQWGTLATISG + I+NERA+I++A++H L +S  +A+AP SF D LLLKEGE DE   GL+P  V GLT EAE+ NGRMAM+
Sbjct:   69 DGRSLVSDAVFEDAMGEWKAEYPKFAKFGWGPSTKAERWNGRHAMFGWFVIVASAYAHGHNLIPNADMALDLKQWGTLATISGKSTITNERAVILIANVHALFVSFLAAMAPSSFADQLLLKEGEVDEEPYGLVPPLVTGLTPEAEIMNGRMAMM 223          
BLAST of mRNA_P-wetherbeei_contig9797.1.1 vs. uniprot
Match: F0Y7T9_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y7T9_AURAN)

HSP 1 Score: 187 bits (475), Expect = 8.240e-58
Identity = 94/142 (66.20%), Postives = 108/142 (76.06%), Query Frame = 1
Query:   79 FASDFPLFAKYGWGPSTKAERWNGRHAMAGWVVIVATGYAKAHGLIPNPDMLLDVKQWGTLATISGATA----ISNERAIIMVAHMHLLMMSICSAIAPLSFQDTLLLKEGEKDEPAPGLIPAFVPGLTKEAEMSNGRMAML 492
            FA DFP+F  YGWG S KAERWNGRHAM GWV IVATGY +AHGLIPNP   LD K+WGTLA ISG       I+NERA I++A++H LM+S+C+A  PL FQDTLLL++GE DE   GLIPAF  GLT  AEM NGR+AML
Sbjct:    6 FAKDFPIFNSYGWGVSAKAERWNGRHAMFGWVFIVATGYCQAHGLIPNPSQALDFKEWGTLAIISGGKGGGLTITNERACILIANVHFLMVSLCAAWCPLPFQDTLLLEQGEPDEEPTGLIPAFDTGLTPAAEMWNGRLAML 147          
BLAST of mRNA_P-wetherbeei_contig9797.1.1 vs. uniprot
Match: A0A7S2W341_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2W341_9STRA)

HSP 1 Score: 187 bits (474), Expect = 4.780e-57
Identity = 90/146 (61.64%), Postives = 112/146 (76.71%), Query Frame = 1
Query:   55 LFEGAQAEFASDFPLFAKYGWGPSTKAERWNGRHAMAGWVVIVATGYAKAHGLIPNPDMLLDVKQWGTLATISGATAISNERAIIMVAHMHLLMMSICSAIAPLSFQDTLLLKEGEKDEPAPGLIPAFVPGLTKEAEMSNGRMAML 492
            +F+ A A+F  D+P F+  GWGPSTKAERWNGRHAM GW  I+ TGYA+AHGLIP  D LLD+K+WGTLATISG   ISNERAII++A++H  M+ I +A APLS+ DTLLL++GE DE   G+ P F  G+T  AE+ NGRMAM+
Sbjct:   48 VFDNAVAKFKEDYPEFSAAGWGPSTKAERWNGRHAMFGWFFIICTGYAQAHGLIPEGDKLLDLKEWGTLATISGTKTISNERAIILIANVHAFMVGILAAFAPLSYMDTLLLEDGEADEEPAGVFPPFDTGITSAAELWNGRMAMM 193          
BLAST of mRNA_P-wetherbeei_contig9797.1.1 vs. uniprot
Match: A0A1X6P0Z3_PORUM (Uncharacterized protein n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6P0Z3_PORUM)

HSP 1 Score: 183 bits (465), Expect = 1.070e-55
Identity = 91/153 (59.48%), Postives = 110/153 (71.90%), Query Frame = 1
Query:   34 VQMFSPALFEGAQAEFASDFPLFAKYGWGPSTKAERWNGRHAMAGWVVIVATGYAKAHGLIPNPDMLLDVKQWGTLATISGATAISNERAIIMVAHMHLLMMSICSAIAPLSFQDTLLLKEGEKDEPAPGLIPAFVPGLTKEAEMSNGRMAML 492
            V+M    +F  A  EF  ++P FAK GWG + KAERWNGRH MAGWV++VATGYAK HGLIP    LLD+KQWGTLA +     ISNERAII++AH+HLL +S+ +A+AP  FQD LLL  GE+D+   GLIP   PGL K AE  NGR+AML
Sbjct:   42 VRMQQLPVFTQAMDEFKKEYPDFAKRGWGATVKAERWNGRHVMAGWVILVATGYAKGHGLIPEASSLLDLKQWGTLAALGNQQPISNERAIILIAHVHLLFVSVAAALAPFPFQDKLLLAPGEEDDAPAGLIPPMAPGLNKTAETWNGRVAML 194          
BLAST of mRNA_P-wetherbeei_contig9797.1.1 vs. uniprot
Match: A0A7S1TI61_9RHOD (Hypothetical protein n=1 Tax=Compsopogon caeruleus TaxID=31354 RepID=A0A7S1TI61_9RHOD)

HSP 1 Score: 182 bits (461), Expect = 3.390e-55
Identity = 96/161 (59.63%), Postives = 116/161 (72.05%), Query Frame = 1
Query:   10 RTAAAANGVQMFSPALFEGAQAEFASDFPLFAKYGWGPSTKAERWNGRHAMAGWVVIVATGYAKAHGLIPNPDMLLDVKQWGTLATISGATAISNERAIIMVAHMHLLMMSICSAIAPLSFQDTLLLKEGEKDEPAPGLIPAFVPGLTKEAEMSNGRMAML 492
            R   A + ++M +  +F  A   FA +FP FAK GWG + KAERWNGRHAM G + IV T YAK HG+IP  D LLDV  WGTLA +   T ISNERAII+VAH+H+L++SI +AIAP SFQD LLL  GE+DE   GLIPAF  GLTK+AE+ NGR+AML
Sbjct:   26 RAVVAKSSLRMQTFPVFTEAMKTFADEFPQFAKLGWGCTVKAERWNGRHAMFGMLAIVLTAYAKGHGMIPEADKLLDVSAWGTLAELGNYTPISNERAIILVAHIHVLLVSIAAAIAPFSFQDKLLLAPGEEDEAPAGLIPAFNLGLTKDAEIWNGRLAML 186          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig9797.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835Z6M5_9STRA1.100e-6465.75CAB/ELIP/HLIP superfamily of protein n=1 Tax=Tribo... [more]
D7FTS3_ECTSI1.880e-6264.86CAB/ELIP/HLIP superfamily of protein n=2 Tax=Ectoc... [more]
A0A6U4CWQ9_9STRA2.490e-6264.33Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
A0A6U4CP98_9STRA1.700e-6164.94Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
A0A7S2MHN0_9STRA1.030e-6065.07Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A7S1BP97_9STRA1.290e-6062.58Hypothetical protein n=1 Tax=Corethron hystrix Tax... [more]
F0Y7T9_AURAN8.240e-5866.20Uncharacterized protein n=1 Tax=Aureococcus anopha... [more]
A0A7S2W341_9STRA4.780e-5761.64Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A1X6P0Z3_PORUM1.070e-5559.48Uncharacterized protein n=1 Tax=Porphyra umbilical... [more]
A0A7S1TI61_9RHOD3.390e-5559.63Hypothetical protein n=1 Tax=Compsopogon caeruleus... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig9797contigP-wetherbeei_contig9797:744..1974 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D7FTS3
PFAMsChloroa_b-bind
Model size492
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons3
Evalue3.09e-63
EggNOG OGs2C7IH@1|root,2S16Q@2759|Eukaryota
Ec32 ortholog descriptionCAB/ELIP/HLIP superfamily of protein
Ec32 orthologEc-14_001030.1
DescriptionChlorophyll A-B binding protein
Cds size492
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187110.7758412-CDS-P-wetherbeei_contig9797:743..9861683187110.7758412-CDS-P-wetherbeei_contig9797:743..986Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig9797 744..986 -
1683187110.7989876-CDS-P-wetherbeei_contig9797:1383..14671683187110.7989876-CDS-P-wetherbeei_contig9797:1383..1467Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig9797 1384..1467 -
1683187110.8127785-CDS-P-wetherbeei_contig9797:1809..19741683187110.8127785-CDS-P-wetherbeei_contig9797:1809..1974Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig9797 1810..1974 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig9797.1.1prot_P-wetherbeei_contig9797.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig9797 744..1974 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig9797.1.1

>prot_P-wetherbeei_contig9797.1.1 ID=prot_P-wetherbeei_contig9797.1.1|Name=mRNA_P-wetherbeei_contig9797.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=164bp
AASRTAAAANGVQMFSPALFEGAQAEFASDFPLFAKYGWGPSTKAERWNG
RHAMAGWVVIVATGYAKAHGLIPNPDMLLDVKQWGTLATISGATAISNER
AIIMVAHMHLLMMSICSAIAPLSFQDTLLLKEGEKDEPAPGLIPAFVPGL
TKEAEMSNGRMAML
back to top

mRNA from alignment at P-wetherbeei_contig9797:744..1974-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig9797.1.1 ID=mRNA_P-wetherbeei_contig9797.1.1|Name=mRNA_P-wetherbeei_contig9797.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1231bp|location=Sequence derived from alignment at P-wetherbeei_contig9797:744..1974- (Phaeothamnion wetherbeei SAG_119_79)
GCGGCGTCCCGGACGGCGGCGGCGGCGAACGGCGTGCAGATGTTCTCGCC AGCGCTCTTTGAAGGAGCCCAGGCGGAGTTCGCCAGCGACTTCCCGCTCT TTGCGAAGTACGGCTGGGGGCCTAGCACCAAGGCGGAGCGGTGGAACGGC CGCCACGCTATGGCCGTGAGTTTCTTGTGAAGCGGTTCTGTGCGCCATAC CTTGAGGATTGGCAGGGCAAATGGCTCGGGCTTTACCCATAAACGCCTTT CATATAGGTTCGCCCATTTTCCCCCGCATTTCTTCAGATTAGTTAGTGCC GGCCTGTAGCCCGTGTTTGCACTCCCCTGCTTGCGTTCCGCGCGGCTTGG AAATAGCGTTGTCCCACATTCAGAATAGTTCCTTGCACGCAGCCTTTCAG TGCAGTAAGCCGTGTATTTTTGCGATTCGCGAAGGCATCGTATGTGTCTA GGTTACCACTTCGTTTGATTGACCATTTGGAAATGCTTTTCTGCGTTCTC TTACCAGGGCTGGGTGGTGATTGTCGCGACGGGCTACGCGAAGGCCCACG GCCTCATCCCCAACCCGGACATGCTGCTTGACGTCAAGCAGGTGCGCCGA CGGGGTTGTGGCAGCTCTTTCTTCGTTGTCAGGACCTTTTAAAATTATTT TTGCATAAGTTGGAAAGAGCAGCTGTGGAGATTGATGGTGTTTGTGGGCG CCTTCCTTCAAAGCTGCGCCACTGCGGTTGCGTTTCCACTCAGCGGAGCG CACACGTCCGTCGTTCGGCAGCCCTGATGCTTCTTTTATCTGTTCCCGCC TTTGTCTCTGATTGCGTGACGGCTGGCATCGACTGTGGATGGCTTCAACT GCGGATGGCAATGTGCAAACTGGCGATATTCAAACGGTGTGCTGCAACGG TGGGCGTCGACACCGAAATTGCGGGCGGCGACGCTCTGACTCGGCGAACG ACGATGCTCTTGTCTATTCGGAACGGCGGCGGCGACAGTGGGGCACCCTC GCTACCATCTCCGGCGCGACCGCGATCTCGAACGAGCGCGCCATCATTAT GGTGGCTCACATGCACCTGCTCATGATGAGCATCTGCTCGGCGATCGCGC CGCTTTCGTTCCAGGACACGCTCCTACTGAAGGAGGGGGAGAAGGATGAG CCGGCCCCGGGCTTGATTCCGGCCTTCGTGCCCGGCCTGACCAAGGAGGC GGAGATGTCGAACGGGCGGATGGCCATGCTC
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig9797:744..1974-

>mRNA_P-wetherbeei_contig9797.1.1 ID=mRNA_P-wetherbeei_contig9797.1.1|Name=mRNA_P-wetherbeei_contig9797.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=492bp|location=Sequence derived from alignment at P-wetherbeei_contig9797:744..1974- (Phaeothamnion wetherbeei SAG_119_79)
GCGGCGTCCCGGACGGCGGCGGCGGCGAACGGCGTGCAGATGTTCTCGCC
AGCGCTCTTTGAAGGAGCCCAGGCGGAGTTCGCCAGCGACTTCCCGCTCT
TTGCGAAGTACGGCTGGGGGCCTAGCACCAAGGCGGAGCGGTGGAACGGC
CGCCACGCTATGGCCGGCTGGGTGGTGATTGTCGCGACGGGCTACGCGAA
GGCCCACGGCCTCATCCCCAACCCGGACATGCTGCTTGACGTCAAGCAGT
GGGGCACCCTCGCTACCATCTCCGGCGCGACCGCGATCTCGAACGAGCGC
GCCATCATTATGGTGGCTCACATGCACCTGCTCATGATGAGCATCTGCTC
GGCGATCGCGCCGCTTTCGTTCCAGGACACGCTCCTACTGAAGGAGGGGG
AGAAGGATGAGCCGGCCCCGGGCTTGATTCCGGCCTTCGTGCCCGGCCTG
ACCAAGGAGGCGGAGATGTCGAACGGGCGGATGGCCATGCTC
back to top