mRNA_P-wetherbeei_contig9791.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig9791.1.1
Unique NamemRNA_P-wetherbeei_contig9791.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig9791.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig9791contigP-wetherbeei_contig9791:247..1209 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog595460.RRSWK_06657
Model size963
Max annot lvl2|Bacteria
Hectar predicted targeting categoryother localisation
Exons1
Evalue4.46e-41
EggNOG OGs2F24D@1|root,33V2Z@2|Bacteria
Cds size963
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187110.6048021-CDS-P-wetherbeei_contig9791:246..12091683187110.6048021-CDS-P-wetherbeei_contig9791:246..1209Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig9791 247..1209 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig9791.1.1prot_P-wetherbeei_contig9791.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig9791 247..1209 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig9791.1.1

>prot_P-wetherbeei_contig9791.1.1 ID=prot_P-wetherbeei_contig9791.1.1|Name=mRNA_P-wetherbeei_contig9791.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=321bp
MSWLQKLFGTASAPEPRQLLPLTLQDIPGTWRSGGWTPRWENVKSHIQKN
YSEEQRDDAYWAVATSWLNNLQKDLGSPYSVLSSEHFLLLSPYPAKKAER
QIKFLELLRSRLCKYLGSQDELESGRPYVVLFFYDSQEFVAYLSHFGTQM
EQGGGSCGTFISRGYPHIAIYDERIELVENSLAHDLTLNLLSNYPLPQWL
LQGLAQLAPQELALSGSTLSTIKEEQDQIREAWKPNVIKQFWSGTAFSPG
DKRHKRAFQLAEVLTRILYSEPGLKKSLPVFISKANRQDCGESAAVEYLG
AGLGSWVGQFLGEGEWGPRV*
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mRNA from alignment at P-wetherbeei_contig9791:247..1209+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig9791.1.1 ID=mRNA_P-wetherbeei_contig9791.1.1|Name=mRNA_P-wetherbeei_contig9791.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=963bp|location=Sequence derived from alignment at P-wetherbeei_contig9791:247..1209+ (Phaeothamnion wetherbeei SAG_119_79)
ATGAGCTGGCTTCAAAAACTTTTCGGCACCGCGAGCGCACCCGAGCCTCG
TCAACTACTACCTCTCACGTTGCAAGACATCCCCGGAACCTGGCGTTCGG
GCGGTTGGACCCCTCGTTGGGAGAACGTGAAGTCCCACATCCAAAAAAAT
TACTCCGAAGAGCAGCGCGACGACGCCTACTGGGCCGTAGCCACAAGTTG
GCTCAACAATCTTCAAAAAGATCTAGGCTCCCCCTACAGCGTCTTGAGCA
GCGAACATTTTCTGCTGCTCTCGCCCTATCCGGCCAAGAAGGCGGAGCGC
CAAATCAAATTCCTCGAGCTTCTGCGCTCCCGACTTTGCAAATACTTGGG
CTCCCAGGACGAACTAGAGAGCGGCAGGCCCTACGTCGTTCTCTTCTTCT
ATGACAGCCAGGAGTTCGTGGCCTACCTTTCTCATTTTGGCACCCAGATG
GAGCAAGGAGGAGGTTCTTGCGGGACGTTTATCAGCCGCGGATATCCCCA
CATCGCCATCTATGACGAGAGAATCGAGCTTGTCGAGAACAGCCTCGCTC
ATGATCTCACGCTCAATTTGCTTTCCAACTATCCTCTCCCTCAGTGGTTG
CTCCAGGGGCTGGCTCAATTAGCTCCCCAGGAACTCGCACTGAGCGGCAG
CACGCTCAGCACAATCAAAGAAGAGCAAGACCAGATTCGGGAAGCCTGGA
AACCCAACGTCATCAAGCAGTTCTGGTCAGGTACCGCCTTCTCTCCTGGA
GACAAGCGGCACAAACGCGCCTTCCAGCTAGCCGAGGTACTGACACGAAT
CCTCTATAGTGAACCCGGCTTAAAAAAATCTCTTCCCGTCTTTATCAGCA
AGGCGAATCGCCAGGATTGCGGCGAGTCCGCAGCCGTAGAGTATCTGGGC
GCCGGTCTGGGGAGCTGGGTCGGACAGTTCCTCGGGGAGGGCGAATGGGG
TCCACGCGTATAA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig9791:247..1209+

>mRNA_P-wetherbeei_contig9791.1.1 ID=mRNA_P-wetherbeei_contig9791.1.1|Name=mRNA_P-wetherbeei_contig9791.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=963bp|location=Sequence derived from alignment at P-wetherbeei_contig9791:247..1209+ (Phaeothamnion wetherbeei SAG_119_79)
ATGAGCTGGCTTCAAAAACTTTTCGGCACCGCGAGCGCACCCGAGCCTCG
TCAACTACTACCTCTCACGTTGCAAGACATCCCCGGAACCTGGCGTTCGG
GCGGTTGGACCCCTCGTTGGGAGAACGTGAAGTCCCACATCCAAAAAAAT
TACTCCGAAGAGCAGCGCGACGACGCCTACTGGGCCGTAGCCACAAGTTG
GCTCAACAATCTTCAAAAAGATCTAGGCTCCCCCTACAGCGTCTTGAGCA
GCGAACATTTTCTGCTGCTCTCGCCCTATCCGGCCAAGAAGGCGGAGCGC
CAAATCAAATTCCTCGAGCTTCTGCGCTCCCGACTTTGCAAATACTTGGG
CTCCCAGGACGAACTAGAGAGCGGCAGGCCCTACGTCGTTCTCTTCTTCT
ATGACAGCCAGGAGTTCGTGGCCTACCTTTCTCATTTTGGCACCCAGATG
GAGCAAGGAGGAGGTTCTTGCGGGACGTTTATCAGCCGCGGATATCCCCA
CATCGCCATCTATGACGAGAGAATCGAGCTTGTCGAGAACAGCCTCGCTC
ATGATCTCACGCTCAATTTGCTTTCCAACTATCCTCTCCCTCAGTGGTTG
CTCCAGGGGCTGGCTCAATTAGCTCCCCAGGAACTCGCACTGAGCGGCAG
CACGCTCAGCACAATCAAAGAAGAGCAAGACCAGATTCGGGAAGCCTGGA
AACCCAACGTCATCAAGCAGTTCTGGTCAGGTACCGCCTTCTCTCCTGGA
GACAAGCGGCACAAACGCGCCTTCCAGCTAGCCGAGGTACTGACACGAAT
CCTCTATAGTGAACCCGGCTTAAAAAAATCTCTTCCCGTCTTTATCAGCA
AGGCGAATCGCCAGGATTGCGGCGAGTCCGCAGCCGTAGAGTATCTGGGC
GCCGGTCTGGGGAGCTGGGTCGGACAGTTCCTCGGGGAGGGCGAATGGGG
TCCACGCGTATAA
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