mRNA_P-wetherbeei_contig9779.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig9779.1.1
Unique NamemRNA_P-wetherbeei_contig9779.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig9779.1.1 vs. uniprot
Match: A0A212CC43_CEREH (Uncharacterized protein n=1 Tax=Cervus elaphus hippelaphus TaxID=46360 RepID=A0A212CC43_CEREH)

HSP 1 Score: 189 bits (479), Expect = 8.040e-53
Identity = 109/227 (48.02%), Postives = 146/227 (64.32%), Query Frame = 1 
Query:   34 GTAIGRCPKPNIFKGYIELEAQLGEADRVRKVYAKYLETFPYNCSAWIDFAHLEQTYGENERARSLFELSISQP-LENPDRAWKAYIDFETGLEETQRARDLYERLLDLSE--VHTEEAPDFQRFRSIFQTLRLLLHDCNLEFIVWVSYARFEASAKGAGGIAAARVVLKRAYDGMRQHGLKEPRVALLEEWRTLEREAGRAGKVGDVEKMMPRRFKKKRMVSEAGG 705
            GT+IG+CPK  +FKGYIELE QL E DR RK+Y K+LE  P NC++WI FA LE   G+ ERAR+++EL+ISQP L+ P+  WK+YIDFE   EET+R R+LY RLL  ++    T E+ DF    S++     +LH  NL+ IVW+S+A+FE S+   G +A  R + + A   MR    KE R+ LLE WR+ E E G A     V+K+MP + KK+R V    G
Sbjct:  350 GTSIGKCPKNKLFKGYIELELQLREFDRCRKLYEKFLEFGPENCTSWIKFAELETILGDIERARAIYELAISQPRLDMPEVLWKSYIDFEIEQEETERTRNLYRRLLQRTQHVKRTCESQDFGML-SLYTRPVFILHVSNLD-IVWISFAQFELSSGKEGSLAKCRQIYEEANKTMRNCEEKEERLMLLESWRSFEDEFGTASDKERVDKLMPEKVKKRRKVQADDG 574
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BLAST of mRNA_P-wetherbeei_contig9779.1.1 vs. uniprot
Match: C3YAA6_BRAFL (Uncharacterized protein n=1 Tax=Branchiostoma floridae TaxID=7739 RepID=C3YAA6_BRAFL)

HSP 1 Score: 186 bits (471), Expect = 2.020e-51
Identity = 108/236 (45.76%), Postives = 141/236 (59.75%), Query Frame = 1 
Query:    1 EKDLAAARKTLGTAIGRCPKPNIFKGYIELEAQLGEADRVRKVYAKYLETFPYNCSAWIDFAHLEQTYGENERARSLFELSISQP-LENPDRAWKAYIDFETGLEETQRARDLYERLLDLSEVHTEEAPDFQRFRSIFQTLRLLLHDCNLEFIVWVSYARFEASAKGAGGIAAARVVLKRAYDGMRQHGLKEPRVALLEEWRTLEREAGRAGKVGDVEKMMPRRFKKKRMVSEAGG 705
            +K+LA AR+ LG AIGRCPK  +FKGYIELE QL E DR R +Y K+LE  P NC++WI FA LE   G+ ERAR+++EL+ISQP L+ P+  WK+YIDFE   EE QR R+LY RLL+ ++ H +                           VW+SYA+FE S  G    A AR + ++    +R    KE R+ LLE WR +E EAG A  +  V K+MP+R KK+R V    G
Sbjct:  373 QKNLAGARRVLGNAIGRCPKDKLFKGYIELELQLREFDRCRILYEKFLEFGPENCTSWIKFAELETILGDVERARAIYELAISQPKLDMPEMLWKSYIDFEIEQEEPQRVRELYGRLLERTQ-HVK---------------------------VWISYAKFELSVAGDDMAARARKIFEQGNRSLRSCEEKEERLMLLEAWRDVEEEAGTAESLEKVNKLMPKRVKKRRKVQTEDG 580
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BLAST of mRNA_P-wetherbeei_contig9779.1.1 vs. uniprot
Match: A0A1Y2GL04_9FUNG (Uncharacterized protein n=1 Tax=Lobosporangium transversale TaxID=64571 RepID=A0A1Y2GL04_9FUNG)

HSP 1 Score: 185 bits (469), Expect = 1.070e-50
Identity = 106/234 (45.30%), Postives = 136/234 (58.12%), Query Frame = 1 
Query:    7 DLAAARKTLGTAIGRCPKPNIFKGYIELEAQLGEADRVRKVYAKYLETFPYNCSAWIDFAHLEQTYGENERARSLFELSISQP-LENPDRAWKAYIDFETGLEETQRARDLYERLLDLSEVHTEEAPDFQRFRSIFQTLRLLLHDCNLEFIVWVSYARFEASAKGAGGIAAARVVLKRAYDGMRQHGLKEPRVALLEEWRTLEREAGRAGKVGDVEKMMPRRFKKKRMVSEAGG 705
            D+AAARK+LG A+G CPK  +FKGYIELE +L + DR RK+YAKYLE  P NC+AWI FA             ++F+L+ISQP L+ P+  WKAYIDFE G EE   AR LY +LL  +  H +                           VW+S+A FEAS  G G  AAAR V K+  + M++HGLKE RV LLE W+  E+  G A  +  V+ +MP+  KK+R V  A G
Sbjct:  427 DVAAARKSLGMALGMCPKDKLFKGYIELELELRDIDRARKLYAKYLEWSPSNCAAWIKFAXXXXXXXXXXXXXAIFDLAISQPELDMPELLWKAYIDFEVGEEEWSNARSLYRKLLQRT-AHVK---------------------------VWISWAHFEASVPGEGQAAAAREVFKKGCNTMKEHGLKEERVILLEAWKEFEQAQGTAETLKSVQDLMPKMVKKRRQVETADG 632
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BLAST of mRNA_P-wetherbeei_contig9779.1.1 vs. uniprot
Match: A0A6P5AGK2_BRABE (crooked neck-like protein 1 n=3 Tax=Branchiostoma TaxID=7737 RepID=A0A6P5AGK2_BRABE)

HSP 1 Score: 185 bits (470), Expect = 1.790e-50
Identity = 107/236 (45.34%), Postives = 140/236 (59.32%), Query Frame = 1 
Query:    1 EKDLAAARKTLGTAIGRCPKPNIFKGYIELEAQLGEADRVRKVYAKYLETFPYNCSAWIDFAHLEQTYGENERARSLFELSISQP-LENPDRAWKAYIDFETGLEETQRARDLYERLLDLSEVHTEEAPDFQRFRSIFQTLRLLLHDCNLEFIVWVSYARFEASAKGAGGIAAARVVLKRAYDGMRQHGLKEPRVALLEEWRTLEREAGRAGKVGDVEKMMPRRFKKKRMVSEAGG 705
            +K+LA AR+ LG AIGRCPK  +FKGYIELE QL E DR R +Y K+LE  P NC++WI FA LE   G+ ERAR+++EL+ISQP L+ P+  WK+YIDFE   EE QR R+LY RLL+ ++ H +                           VW+SYA+FE S  G    A AR + ++    +R    KE R+ LLE WR +E EAG    +  V K+MP+R KK+R V    G
Sbjct:  428 QKNLAGARRVLGNAIGRCPKDKLFKGYIELELQLREFDRCRILYEKFLEFGPENCTSWIKFAELETILGDVERARAIYELAISQPKLDMPEMLWKSYIDFEIEQEEPQRVRELYSRLLERTQ-HVK---------------------------VWISYAKFELSVAGEDMAARARKIFEQGNRALRNCEEKEERLMLLEAWRDVEEEAGSVESLEKVNKLMPKRVKKRRKVQTEDG 635
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BLAST of mRNA_P-wetherbeei_contig9779.1.1 vs. uniprot
Match: A0A7F8R5E7_LEPWE (crooked neck-like protein 1 n=1 Tax=Leptonychotes weddellii TaxID=9713 RepID=A0A7F8R5E7_LEPWE)

HSP 1 Score: 179 bits (454), Expect = 4.990e-50
Identity = 105/236 (44.49%), Postives = 140/236 (59.32%), Query Frame = 1 
Query:    1 EKDLAAARKTLGTAIGRCPKPNIFKGYIELEAQLGEADRVRKVYAKYLETFPYNCSAWIDFAHLEQTYGENERARSLFELSISQP-LENPDRAWKAYIDFETGLEETQRARDLYERLLDLSEVHTEEAPDFQRFRSIFQTLRLLLHDCNLEFIVWVSYARFEASAKGAGGIAAARVVLKRAYDGMRQHGLKEPRVALLEEWRTLEREAGRAGKVGDVEKMMPRRFKKKRMVSEAGG 705
            +K+L  AR+ LGT+IG+CPK  +FKGYIELE QL E DR RK+Y K+LE  P NC++WI FA LE   G+ ERAR+++EL+ISQP L+ P+  WK+YIDFE   EET+R R+LY RLL             QR + +                VW+S+A+FE S+   G +A  R + + A   MR    KE R+ LLE WR+ E E G       V+K+MP + KK+R V    G
Sbjct:  227 QKNLPFARRALGTSIGKCPKNKLFKGYIELELQLREFDRCRKLYEKFLEFGPENCTSWIKFAELETILGDIERARAIYELAISQPRLDMPEVLWKSYIDFEIEQEETERTRNLYRRLL-------------QRTQHVK---------------VWISFAQFELSSGKEGSLAKCRQIYEEANKTMRNCEEKEERLMLLESWRSFEDEFGTVSDKERVDKLMPEKVKKRRKVQADDG 434
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BLAST of mRNA_P-wetherbeei_contig9779.1.1 vs. uniprot
Match: A0A1B0FNJ0_GLOMM (Uncharacterized protein n=1 Tax=Glossina morsitans morsitans TaxID=37546 RepID=A0A1B0FNJ0_GLOMM)

HSP 1 Score: 174 bits (442), Expect = 1.640e-49
Identity = 107/243 (44.03%), Postives = 141/243 (58.02%), Query Frame = 1 
Query:    4 KDLAAARKTLGTAIGRCPKPNIFKGYIELEAQLGEADRVRKVYAKYLETFPYNCSAWIDFAHLEQTYGENERARSLFELSISQP-LENPDRAWKAYIDFETGLEETQRARDLYERLLDLSEVHTEEAPDFQRFRSIFQTLRLLLHDCNLEFIVWVSYARFEASAKGAG--------GIAAARVVLKRAYDGMRQHGLKEPRVALLEEWRTLEREAGRAGKVGDVEKMMPRRFKKK-RMVSEAG 702
            KDL  ARKTLG AIG CP+  +F+GYIELE QL E DR R +Y K+LE  P NC+ W+ FA LE   G+ ER+R ++EL+I QP L+ P+  WKAYIDFE    E++ AR LYERLL+ ++ H +                           VW+SYA+FE S +            +  AR V +RA D +RQ G KE RV LLE WR  E+ +G    +  V + MPRR KK+ ++VSE+G
Sbjct:   94 KDLNKARKTLGMAIGMCPRDKLFRGYIELEIQLREFDRCRLLYEKFLEYGPENCATWMKFAELENLLGDTERSRGIYELAIQQPRLDMPELLWKAYIDFEVSQGESELARQLYERLLERTQ-HVK---------------------------VWISYAKFELSTENPEKEGTDKEMSLDLARRVYERANDALRQMGDKESRVLLLEAWRDFEKVSGTPQSLDKVIEKMPRRVKKRQKIVSESG 308
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BLAST of mRNA_P-wetherbeei_contig9779.1.1 vs. uniprot
Match: A0A197JFM9_9FUNG (TPR-like protein n=1 Tax=Linnemannia elongata AG-77 TaxID=1314771 RepID=A0A197JFM9_9FUNG)

HSP 1 Score: 181 bits (458), Expect = 1.920e-49
Identity = 103/236 (43.64%), Postives = 137/236 (58.05%), Query Frame = 1 
Query:    1 EKDLAAARKTLGTAIGRCPKPNIFKGYIELEAQLGEADRVRKVYAKYLETFPYNCSAWIDFAHLEQTYGENERARSLFELSISQP-LENPDRAWKAYIDFETGLEETQRARDLYERLLDLSEVHTEEAPDFQRFRSIFQTLRLLLHDCNLEFIVWVSYARFEASAKGAGGIAAARVVLKRAYDGMRQHGLKEPRVALLEEWRTLEREAGRAGKVGDVEKMMPRRFKKKRMVSEAGG 705
            ++DL+AARK LG AIG CPK  +FKGYIELE +L   DR R +YAKYLE  P  C+AWI FA LE    + ERAR++F+L++SQP L+ P+  WKAYIDFE G E+   AR LY++LL+ +  H +                           VW+S+A FEAS    G    AR V K+    M+  GLKE RV LLE W+  E+  G A  + +V+ +MP+  K++R V    G
Sbjct:  414 QQDLSAARKALGMAIGMCPKDKLFKGYIELELELRAIDRARTLYAKYLEWSPSTCAAWIKFAELESELQDTERARAIFDLAVSQPELDMPEILWKAYIDFEVGEEQWVHARSLYKQLLERT-AHVK---------------------------VWISWAHFEASVPEEGQADVARDVFKKGSQTMKDQGLKEERVILLEAWKEFEQAQGTAESLKNVQDLMPKMVKRRRQVESTDG 621
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BLAST of mRNA_P-wetherbeei_contig9779.1.1 vs. uniprot
Match: L5JY02_PTEAL (Crooked neck-like protein 1 n=2 Tax=Boreoeutheria TaxID=1437010 RepID=L5JY02_PTEAL)

HSP 1 Score: 181 bits (458), Expect = 2.960e-49
Identity = 106/236 (44.92%), Postives = 141/236 (59.75%), Query Frame = 1 
Query:    1 EKDLAAARKTLGTAIGRCPKPNIFKGYIELEAQLGEADRVRKVYAKYLETFPYNCSAWIDFAHLEQTYGENERARSLFELSISQP-LENPDRAWKAYIDFETGLEETQRARDLYERLLDLSEVHTEEAPDFQRFRSIFQTLRLLLHDCNLEFIVWVSYARFEASAKGAGGIAAARVVLKRAYDGMRQHGLKEPRVALLEEWRTLEREAGRAGKVGDVEKMMPRRFKKKRMVSEAGG 705
            +K+L  AR+ LGT+IG+CPK  +FKGYIELE QL E DR RK+Y K+LE  P NC++WI FA LE   G+ ERAR+++EL+ISQP L+ P+  WK+YIDFE   EET+R R+LY RLL             QR + +                VW+S+A+FE S+   G +A  R + + A   MR    KE R+ LLE WR+ E E G A     V+K+MP + KK+R V    G
Sbjct:  439 QKNLPFARRALGTSIGKCPKNKLFKGYIELELQLREFDRCRKLYEKFLEFGPENCTSWIKFAELETILGDIERARAIYELAISQPRLDMPEVLWKSYIDFEIEQEETERTRNLYRRLL-------------QRTQHVK---------------VWISFAQFELSSGKEGSLAKCRQIYEEANKTMRNCEEKEERLMLLESWRSFEDEFGTASDKERVDKLMPEKVKKRRKVQTDDG 646
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BLAST of mRNA_P-wetherbeei_contig9779.1.1 vs. uniprot
Match: UPI002019DB6B (LOW QUALITY PROTEIN: crooked neck-like protein 1 n=6 Tax=Perognathus longimembris pacificus TaxID=214514 RepID=UPI002019DB6B)

HSP 1 Score: 180 bits (457), Expect = 5.240e-49
Identity = 101/231 (43.72%), Postives = 136/231 (58.87%), Query Frame = 1 
Query:    1 EKDLAAARKTLGTAIGRCPKPNIFKGYIELEAQLGEADRVRKVYAKYLETFPYNCSAWIDFAHLEQTYGENERARSLFELSISQP-LENPDRAWKAYIDFETGLEETQRARDLYERLLDLSEVHTEEAPDFQRFRSIFQTLRLLLHDCNLEFIVWVSYARFEASAKGAGGIAAARVVLKRAYDGMRQHGLKEPRVALLEEWRTLEREAGRAGKVGDVEKMMPRRFKKKRMV 690
            +K++  AR+ LGT++G+CPK  +FKGYIELE QL E DR RK+Y K+LE  P NC++WI FA +E   G+ ERAR+++EL+ISQP L+ P+  WK+YIDFE   EET+R R+LY RLL                             C     VW+S+ARFE S    G +A  R + + A   MR    KE R+ LLE WR+ E E G   +   V K+MP++ KK+R V
Sbjct:  427 QKNVPFARRVLGTSLGKCPKNKLFKGYIELELQLREFDRCRKLYEKWLEFAPENCASWIQFAEVETLLGDLERARAIYELAISQPRLDMPEVLWKSYIDFEMEQEETERPRNLYRRLL----------------------------QCTQHVKVWISWARFELSTGEEGSVARCRQIYEEANQTMRNCEDKEDRLLLLESWRSFEDEFGTVSEKDQVNKLMPKKAKKRRKV 629
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BLAST of mRNA_P-wetherbeei_contig9779.1.1 vs. uniprot
Match: A0A3S2LKX8_ORYJA (Uncharacterized protein n=1 Tax=Oryzias javanicus TaxID=123683 RepID=A0A3S2LKX8_ORYJA)

HSP 1 Score: 180 bits (457), Expect = 6.300e-49
Identity = 104/236 (44.07%), Postives = 139/236 (58.90%), Query Frame = 1 
Query:    1 EKDLAAARKTLGTAIGRCPKPNIFKGYIELEAQLGEADRVRKVYAKYLETFPYNCSAWIDFAHLEQTYGENERARSLFELSISQP-LENPDRAWKAYIDFETGLEETQRARDLYERLLDLSEVHTEEAPDFQRFRSIFQTLRLLLHDCNLEFIVWVSYARFEASAKGAGGIAAARVVLKRAYDGMRQHGLKEPRVALLEEWRTLEREAGRAGKVGDVEKMMPRRFKKKRMVSEAGG 705
            +K+L AARK +GTAIG+CPK  + KGYIELE QL E DR RK+Y KYLE  P NC+ WI FA LE   G+ ER+R++FEL+I QP L+ P+  WK+YIDFE   EE +  R+LY+RLL             QR + +                VW+SYA+FE S +G   +A  R + + A   MR    KE R+ LLE WR  E+E G  G    V+K++P + KK+R ++   G
Sbjct:  424 QKNLQAARKIMGTAIGKCPKNKLLKGYIELELQLREFDRCRKLYEKYLEFSPENCTTWIKFAELETILGDVERSRAIFELAIGQPRLDMPEVLWKSYIDFEIEQEEFENTRNLYKRLL-------------QRTQHVK---------------VWISYAKFELSVEGPDRLAKCRQIFEEANKSMRNCEEKEERLMLLESWRDFEKEFGSDGSRERVQKLLPEKVKKRRKLTAEDG 631
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig9779.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A212CC43_CEREH8.040e-5348.02Uncharacterized protein n=1 Tax=Cervus elaphus hip... [more]
C3YAA6_BRAFL2.020e-5145.76Uncharacterized protein n=1 Tax=Branchiostoma flor... [more]
A0A1Y2GL04_9FUNG1.070e-5045.30Uncharacterized protein n=1 Tax=Lobosporangium tra... [more]
A0A6P5AGK2_BRABE1.790e-5045.34crooked neck-like protein 1 n=3 Tax=Branchiostoma ... [more]
A0A7F8R5E7_LEPWE4.990e-5044.49crooked neck-like protein 1 n=1 Tax=Leptonychotes ... [more]
A0A1B0FNJ0_GLOMM1.640e-4944.03Uncharacterized protein n=1 Tax=Glossina morsitans... [more]
A0A197JFM9_9FUNG1.920e-4943.64TPR-like protein n=1 Tax=Linnemannia elongata AG-7... [more]
L5JY02_PTEAL2.960e-4944.92Crooked neck-like protein 1 n=2 Tax=Boreoeutheria ... [more]
UPI002019DB6B5.240e-4943.72LOW QUALITY PROTEIN: crooked neck-like protein 1 n... [more]
A0A3S2LKX8_ORYJA6.300e-4944.07Uncharacterized protein n=1 Tax=Oryzias javanicus ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig9779contigP-wetherbeei_contig9779:3..1548 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog7739.XP_002606644.1
Preferred nameCRNKL1
PFAMsHAT
Model size705
Max annot lvl33208|Metazoa
KEGG koko:K12869
KEGG Pathwayko03040,map03040
KEGG ModuleM00355
Hectar predicted targeting categoryother localisation
GOsGO:0000245,GO:0000375,GO:0000377,GO:0000381,GO:0000398,GO:0000974,GO:0001655,GO:0001742,GO:0002009,GO:0003674,GO:0003676,GO:0003723,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005681,GO:0005684,GO:0005737,GO:0006139,GO:0006396,GO:0006397,GO:0006725,GO:0006807,GO:0006928,GO:0007272,GO:0007275,GO:0007399,GO:0007417,GO:0007420,GO:0007438,GO:0007442,GO:0007443,GO:0008150,GO:0008152,GO:0008347,GO:0008366,GO:0008380,GO:0009653,GO:0009719,GO:0009790,GO:0009888,GO:0009987,GO:0010033,GO:0010467,GO:0010468,GO:0016043,GO:0016070,GO:0016071,GO:0016477,GO:0016604,GO:0016607,GO:0019219,GO:0019222,GO:0021537,GO:0021543,GO:0021987,GO:0022008,GO:0022607,GO:0022613,GO:0022618,GO:0030154,GO:0030900,GO:0031323,GO:0031974,GO:0031981,GO:0032501,GO:0032502,GO:0032991,GO:0034097,GO:0034622,GO:0034641,GO:0035239,GO:0035295,GO:0040011,GO:0042063,GO:0042221,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043484,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044451,GO:0044464,GO:0046483,GO:0048024,GO:0048468,GO:0048513,GO:0048546,GO:0048565,GO:0048598,GO:0048619,GO:0048729,GO:0048731,GO:0048856,GO:0048869,GO:0048870,GO:0050684,GO:0050789,GO:0050794,GO:0050896,GO:0051171,GO:0051179,GO:0051252,GO:0051674,GO:0051716,GO:0055123,GO:0060255,GO:0060322,GO:0060429,GO:0060562,GO:0061326,GO:0061333,GO:0061525,GO:0065003,GO:0065007,GO:0070013,GO:0070848,GO:0070887,GO:0071007,GO:0071010,GO:0071011,GO:0071012,GO:0071013,GO:0071014,GO:0071310,GO:0071345,GO:0071363,GO:0071495,GO:0071704,GO:0071826,GO:0071840,GO:0072001,GO:0072002,GO:0080090,GO:0090304,GO:0097159,GO:1901360,GO:1901363,GO:1902494,GO:1903311,GO:1990089,GO:1990090,GO:1990416,GO:1990823,GO:1990830,GO:1990904
Exons5
Evalue3.32e-52
EggNOG OGsKOG1915@1|root,KOG1915@2759|Eukaryota,38FN1@33154|Opisthokonta,3BEIY@33208|Metazoa,3CVXY@33213|Bilateria,48780@7711|Chordata
DescriptionCrooked neck pre-mRNA splicing factor 1
Cds size705
COG categoryD
BRITEko00000,ko00001,ko00002,ko03036,ko03041
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187109.7392497-CDS-P-wetherbeei_contig9779:2..1011683187109.7392497-CDS-P-wetherbeei_contig9779:2..101Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig9779 3..101 +
1683187109.7522607-CDS-P-wetherbeei_contig9779:450..5751683187109.7522607-CDS-P-wetherbeei_contig9779:450..575Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig9779 451..575 +
1683187109.7615461-CDS-P-wetherbeei_contig9779:869..10581683187109.7615461-CDS-P-wetherbeei_contig9779:869..1058Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig9779 870..1058 +
1683187109.7709837-CDS-P-wetherbeei_contig9779:1147..11901683187109.7709837-CDS-P-wetherbeei_contig9779:1147..1190Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig9779 1148..1190 +
1683187109.7815707-CDS-P-wetherbeei_contig9779:1299..15481683187109.7815707-CDS-P-wetherbeei_contig9779:1299..1548Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig9779 1300..1548 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig9779.1.1prot_P-wetherbeei_contig9779.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig9779 3..1548 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig9779.1.1

>prot_P-wetherbeei_contig9779.1.1 ID=prot_P-wetherbeei_contig9779.1.1|Name=mRNA_P-wetherbeei_contig9779.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=235bp
EKDLAAARKTLGTAIGRCPKPNIFKGYIELEAQLGEADRVRKVYAKYLET
FPYNCSAWIDFAHLEQTYGENERARSLFELSISQPLENPDRAWKAYIDFE
TGLEETQRARDLYERLLDLSEVHTEEAPDFQRFRSIFQTLRLLLHDCNLE
FIVWVSYARFEASAKGAGGIAAARVVLKRAYDGMRQHGLKEPRVALLEEW
RTLEREAGRAGKVGDVEKMMPRRFKKKRMVSEAGG
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mRNA from alignment at P-wetherbeei_contig9779:3..1548+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig9779.1.1 ID=mRNA_P-wetherbeei_contig9779.1.1|Name=mRNA_P-wetherbeei_contig9779.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1546bp|location=Sequence derived from alignment at P-wetherbeei_contig9779:3..1548+ (Phaeothamnion wetherbeei SAG_119_79)
GAGAAGGACCTCGCGGCCGCCCGCAAGACCCTCGGGACGGCCATCGGCCG
CTGCCCCAAGCCCAACATCTTCAAGGGGTACATCGAGCTCGAAGCTCAGG
TACGCTTTCCTTCTGCGTGGCTGTTGGGTATCCCCGCGTTGTGGAGCGCT
TCGGCGTTCGTGTGGCGTTGGGTTTGGAGCGGGCGGCGGCAGTGATGTGT
GCGCTGTTCCTTCGCATCTGCAGAGTGGCGAGAGAGACTATGAGTGCTGC
GGCAAGCGCAGTACCTCTACGCGGACGCGACGGGGCAGTCTTCGACTTGT
GCCTGCCTACGCAGTGGCCCAGCTCTACCCTTTCGCCCGCCCGCGTCCGC
CCTCTTCGCTTTGCTTTCTCGTGCTGAACCATGCGCCGACCATCCGTCCC
TCCACCTGCCCACCGGTCTGTCCACCGTTCTGTCCTGTCCTCGCCCAGCT
GGGGGAGGCAGACCGGGTGCGCAAGGTGTATGCCAAGTACCTCGAGACGT
TCCCTTACAACTGCTCCGCGTGGATTGACTTCGCCCACCTCGAGCAGACC
TACGGCGAGAACGAGCGCGCCAGGTGAGATAGATACCAGCAATGGGAGTG
ACTGAGAACGGGGTATTTCGGCTTGGTGATTCGGCTTCCGGTTTAGTATC
TTCACGTAAATTCAGGCTTCCACGCCGCTGTCGCCAATACCGCCTTCAAA
ACGTTGGTAGGAATGTTTACAAGAAGCAGCAGGCAGATATGTTGTCTCCG
AAGCCCACTAAACAGCCAGTGCCTGACCCGTTTCTCTTCGTTCTTCTACT
CTTCTCTCTCGATGCATTGCGATGCCCCAATTGATCGAATCTGCAACGAT
CGATCTGCATAAATCAGGTCGCTTTTCGAGCTGTCCATCTCACAGCCGCT
GGAGAACCCAGACCGGGCGTGGAAGGCGTACATCGACTTTGAGACGGGCC
TCGAGGAGACACAGCGCGCCCGCGACCTCTACGAGCGACTCCTCGACCTC
AGCGAGGTACATACTGAAGAGGCGCCCGACTTTCAGCGTTTTCGGTCAAT
TTTTCAGTCACTTTTCCAGCATTTTCTGGCGGCGTATCTGGCTGATAATG
GACGATCTTTCTTTCTCCATTTTGTAACGGTGCGGTGTTCAAGAGAACGT
TGCGACTACTGCTGCACGATTGCAATCTGGAATTCATCGTTGAATATGCC
TATTTTTCCAACTAGCTCTTTTTGTTCGGATTGCCATTTGCTTCCATCGC
CTTCTTTCTCTTCCGCGCCACGCCGCGACTCATTGCAGCACCAGAAGGTG
TGGGTGAGCTACGCGCGGTTCGAGGCGTCGGCCAAGGGCGCCGGCGGCAT
CGCGGCGGCGCGGGTGGTGCTGAAGCGCGCCTACGATGGCATGCGGCAGC
ATGGCCTCAAGGAGCCGCGCGTGGCGCTGCTGGAGGAGTGGCGCACCCTC
GAGCGCGAGGCGGGCAGGGCCGGCAAGGTCGGCGACGTCGAGAAGATGAT
GCCACGCCGGTTCAAGAAGAAGCGCATGGTGAGCGAGGCAGGCGGG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig9779:3..1548+

>mRNA_P-wetherbeei_contig9779.1.1 ID=mRNA_P-wetherbeei_contig9779.1.1|Name=mRNA_P-wetherbeei_contig9779.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=705bp|location=Sequence derived from alignment at P-wetherbeei_contig9779:3..1548+ (Phaeothamnion wetherbeei SAG_119_79)
GAGAAGGACCTCGCGGCCGCCCGCAAGACCCTCGGGACGGCCATCGGCCG
CTGCCCCAAGCCCAACATCTTCAAGGGGTACATCGAGCTCGAAGCTCAGC
TGGGGGAGGCAGACCGGGTGCGCAAGGTGTATGCCAAGTACCTCGAGACG
TTCCCTTACAACTGCTCCGCGTGGATTGACTTCGCCCACCTCGAGCAGAC
CTACGGCGAGAACGAGCGCGCCAGGTCGCTTTTCGAGCTGTCCATCTCAC
AGCCGCTGGAGAACCCAGACCGGGCGTGGAAGGCGTACATCGACTTTGAG
ACGGGCCTCGAGGAGACACAGCGCGCCCGCGACCTCTACGAGCGACTCCT
CGACCTCAGCGAGGTACATACTGAAGAGGCGCCCGACTTTCAGCGTTTTC
GGTCAATTTTTCAAACGTTGCGACTACTGCTGCACGATTGCAATCTGGAA
TTCATCGTGTGGGTGAGCTACGCGCGGTTCGAGGCGTCGGCCAAGGGCGC
CGGCGGCATCGCGGCGGCGCGGGTGGTGCTGAAGCGCGCCTACGATGGCA
TGCGGCAGCATGGCCTCAAGGAGCCGCGCGTGGCGCTGCTGGAGGAGTGG
CGCACCCTCGAGCGCGAGGCGGGCAGGGCCGGCAAGGTCGGCGACGTCGA
GAAGATGATGCCACGCCGGTTCAAGAAGAAGCGCATGGTGAGCGAGGCAG
GCGGG
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