Homology
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Stop | 1 |
| Start | 1 |
| Model size | 3486 |
| Hectar predicted targeting category | other localisation |
| Exons | 4 |
| Cds size | 2727 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1683187107.2935774-UTR-P-wetherbeei_contig973:3606..3623 | 1683187107.2935774-UTR-P-wetherbeei_contig973:3606..3623 | Phaeothamnion wetherbeei SAG_119_79 | UTR | P-wetherbeei_contig973 3607..3623 - |
| 1683187107.3508513-UTR-P-wetherbeei_contig973:7026..7768 | 1683187107.3508513-UTR-P-wetherbeei_contig973:7026..7768 | Phaeothamnion wetherbeei SAG_119_79 | UTR | P-wetherbeei_contig973 7027..7768 - |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1683187107.305103-CDS-P-wetherbeei_contig973:3623..4540 | 1683187107.305103-CDS-P-wetherbeei_contig973:3623..4540 | Phaeothamnion wetherbeei SAG_119_79 | CDS | P-wetherbeei_contig973 3624..4540 - |
| 1683187107.316625-CDS-P-wetherbeei_contig973:4791..4904 | 1683187107.316625-CDS-P-wetherbeei_contig973:4791..4904 | Phaeothamnion wetherbeei SAG_119_79 | CDS | P-wetherbeei_contig973 4792..4904 - |
| 1683187107.3280864-CDS-P-wetherbeei_contig973:5118..5264 | 1683187107.3280864-CDS-P-wetherbeei_contig973:5118..5264 | Phaeothamnion wetherbeei SAG_119_79 | CDS | P-wetherbeei_contig973 5119..5264 - |
| 1683187107.34162-CDS-P-wetherbeei_contig973:5475..7026 | 1683187107.34162-CDS-P-wetherbeei_contig973:5475..7026 | Phaeothamnion wetherbeei SAG_119_79 | CDS | P-wetherbeei_contig973 5476..7026 - |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-wetherbeei_contig973.2.1 >prot_P-wetherbeei_contig973.2.1 ID=prot_P-wetherbeei_contig973.2.1|Name=mRNA_P-wetherbeei_contig973.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=909bp
MGSEAFRAEVAALFAEFGGGEFDGGELEGGELHGSELHGVGECGYVLGGG
PEKASWLPRRRGDSNSVITVAAPAATAAATVEATMTVEAAWREVPAAAPS
EGPALAAPPAGSAAAVDTVAAPSFEAKEASLRAELEVLRSAASESARRIS
QLEAELRHERSAAAAAATTAQLEAAAAAANAARLSEEAVVLRAAASAARD
EASAGREVAIAVEADAGQLRSRVQSLEVNLAACRREMETARGRMATELAA
AARKVAGLQEELSSASAAATAAAAEGVRHESEAAAALEAERQRSVVAEAA
ARREAGAEAVELRTRLSALVKEHAVATATLMRRHREEMDAAAATARITDE
AHASELDKAVAASATAAAAAAAAAAEKWEAERVAAAATASATVLKERLEA
AQEELHDAASREGAAVTAATEPLRTRLSEMAATLAAEEERASALRRSVQA
QEDEQQRTAAEADASQEAAVGAAAALRTERAALAALVAKLRACVGAEIVA
VAPAQERARIMHTPLAELEAAVAQAVHQRRAWREQTAEAAARAAELEAAV
RRQGAALEQTRARYDSTLEELERTRKQSGEHRQRANQAQAELAPLLAAVS
EQEGMIRAMRREIGARDDRAAAAAATARRQEAQVRRLRDELRELSGVNRS
WSSALVAAGSLGSGESSRAAAGGVTVGAGDDMGANGGCAGAGASAAPRAT
ASGAAKAGSASTARAAAAATAAVTAAMAVAATAGASDDGGGGGAATGDFT
GASGTSVATSAQRTPPPPPCRTNLRSQETEKPIIRSLSPPSPPSPAPPPA
LRASANPAFSLAADSWRRSAASTAALALNIDIVAAAAQKLLAVQAANAPT
VAVLPKERRRSSGASLGGKSRSGKSGGSSAAGGSRRSSGAASALGGEQQM
KGKKIGKL* back to topmRNA from alignment at P-wetherbeei_contig973:3607..7768- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_P-wetherbeei_contig973.2.1 ID=mRNA_P-wetherbeei_contig973.2.1|Name=mRNA_P-wetherbeei_contig973.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=4162bp|location=Sequence derived from alignment at P-wetherbeei_contig973:3607..7768- (Phaeothamnion wetherbeei SAG_119_79)
GCGGGGTCGGTCACGGCCACGGCACGACGCCGGTGCCCCAGACGTCGCCT
GGTCACCAGAGGGGTCTCCCTGCGAGCGGCAGACCAGCGCGGAAGCGTTT
GCTGCTGAACATCGGAGCAACAGGAGCCCAGCCGCTGCCCGATGTGGCGT
AACCGGCGTCAATGATAGCAGCGGCAGCGTTGGCGGCCAAGACCAAGGCG
ACGATAGACAAGATTCCGGAAGCGCCAAACGAAGCGCCGCAGATTTGCAG
AGGCACTGTGCCTGCCTCAATGGTGGCAGCAGCGGCGACGGTGGCGGCGG
CGGGGGAAGCGGCGCGCGCAGCGAAGACGAAGCGGAATGGCGGCGGCTCT
TTTCACAGCGGCAGCCCCTGTACGCCCGTTTTGCAGGAGAGCTCAACGGT
CTCAAAGGCGGCCTCATAGAAGAGTCCGGCCGCCGCCGGGAAGTCGAAGC
GCAGGTGGCGTCGCTGGGGCTGCGTCTGGAGGCGATTGCAAATCGTGCCG
GCGGCAGCGGCGAAGCTGGAGAACGGAGCAGCGCCGCGCGTCATGGAAGC
TTGGATAGGAGCGGCGGCGTTGACGGCGGCGGCAACGGCGGCGGTGCCAA
CAGCGAAAACAGCGATTCGAACGACGGCGGTTATGGCGGCGGCGGTTACG
GCCAGTCGCTGCTGGACGAGTACTGGGGCCGACGTCAGGAGCTCGTGCGG
GACCTCGAGGCGCTCCGGGAAGAGGCGAGCGCCACGCAGGCCATGGGCAG
TGAGGCCTTTCGCGCTGAAGTGGCGGCGCTCTTTGCCGAATTCGGCGGCG
GCGAGTTCGACGGCGGCGAACTTGAAGGCGGTGAATTGCACGGCAGCGAA
TTACACGGCGTCGGCGAGTGCGGATACGTGCTTGGCGGCGGACCGGAGAA
AGCATCGTGGCTGCCTCGAAGGAGGGGTGACAGCAATTCTGTCATCACGG
TGGCGGCGCCGGCAGCAACAGCGGCGGCAACGGTGGAGGCAACGATGACG
GTGGAAGCGGCGTGGAGGGAAGTACCAGCGGCTGCGCCGTCAGAAGGGCC
GGCGCTGGCAGCGCCGCCGGCTGGTTCTGCGGCGGCGGTAGACACGGTGG
CTGCTCCATCGTTCGAGGCGAAAGAAGCCTCGCTCCGAGCGGAACTCGAA
GTGTTGCGATCGGCGGCGTCAGAATCGGCGCGGCGCATCTCTCAGCTGGA
AGCAGAGCTTCGGCATGAACGATCTGCTGCCGCCGCCGCTGCGACGACGG
CGCAACTCGAAGCGGCGGCCGCGGCTGCCAACGCCGCGAGGCTGTCAGAG
GAGGCGGTGGTGCTGCGCGCGGCGGCCTCTGCCGCGAGGGATGAAGCCTC
CGCGGGGCGGGAGGTGGCAATCGCCGTGGAAGCAGATGCCGGCCAGCTGC
GAAGCCGGGTGCAGTCCCTCGAAGTGAATCTGGCGGCCTGTCGCCGCGAA
ATGGAGACGGCCCGTGGGCGGATGGCGACGGAATTGGCGGCGGCTGCGAG
GAAGGTGGCGGGATTGCAGGAGGAGCTGTCGTCTGCGAGTGCGGCGGCAA
CCGCAGCGGCGGCCGAGGGGGTGAGGCATGAAAGCGAAGCGGCGGCGGCA
CTTGAGGCGGAGCGGCAGCGTTCTGTCGTCGCCGAAGCGGCCGCCAGGCG
GGAAGCGGGAGCCGAGGCAGTGGAGCTGCGAACTAGGTTGTCGGCATTGG
TCAAGGAACACGCCGTCGCCACGGCGACGCTGATGCGGCGTCACAGGGAG
GAGATGGACGCCGCTGCCGCTACGGCTCGTATCACCGACGAAGCGCACGC
TAGCGAACTCGACAAAGCGGTGGCCGCGTCAGCCACTGCAGCCGCAGCGG
CGGCGGCGGCGGCAGCCGAAAAATGGGAAGCGGAGCGGGTGGCAGCGGCT
GCGACGGCGTCGGCGACGGTGCTGAAGGAGCGCCTGGAGGCTGCGCAAGA
GGAGCTGCACGACGCCGCGTCCAGAGAAGGAGCCGCTGTGACGGCGGCGA
CGGAGCCACTGCGAACTCGGCTGTCGGAGATGGCGGCGACGCTGGCAGCG
GAAGAGGAACGGGCGTCAGCACTGCGCCGCAGTGTTCAGGCACAGGAGGA
CGAACAGCAGCGAACAGCGGCGGAAGCGGACGCGTCGCAGGAGGCGGCCG
TCGGAGCGGCAGCGGCGCTGCGCACGGAGCGCGCTGCATTAGCAGCGCTG
GTGGCGAAGCTGCGGGCGTGTGTCGGGGCAGAGATTGTGGCGGTCGCACC
GGCGCAAGAGCGGGCGAGAATCATGCACACGCCGCTCGCTGAGGTGAGTC
GGCTCTCATAGCAGCCTTTTAGTTTGCTGCCTCATTGTGCGCCCGAGTCA
GATTTCATTCGGCGGAGGTGACTCACGTTCTTGTGGTCCTTGCCTTTTTC
CTTCTGACGCCGCCCCTTCGTCGAAGCCATGGTTGGTAATTGGAACGTGC
CGTTGCCTCCTGCACCACTGCTCCTTTTGCCTTTATGGTTGTGTTACCAC
GCAGCTGGAGGCGGCGGTGGCACAAGCGGTGCACCAGCGGCGGGCGTGGC
GGGAGCAGACAGCTGAAGCGGCCGCGCGGGCTGCAGAGCTCGAGGCTGCC
GTGCGGCGCCAGGGGGCCGCGCTAGAGCAGACGCGGGCGCGCTACGACAG
GTGCGCCTGTTTCTTCTTCTTTTGTCGCTTTTTCGTTGGGTTATATACAT
TACACGTGTCATGTAGCTCTATTGTGTTATATGGAGATACCTGGCACGTT
TGCCACCGCCGCCACCTCTTGAATTTGACCACCGTCGACTGTTGCTCAAG
CCCTCTGCTTGCCGATGGCTGACTGTAACCGGCACTACTGCTACCATTGC
TGCTATGCCGGCAGTACCCTGGAAGAATTGGAGCGGACGCGAAAGCAGTC
GGGCGAGCACCGGCAGCGCGCGAATCAGGCGCAGGCAGAGCTGGCGCCGC
TGCTGGCCGCCGTTTCGGAGCAAGAAGGTGTGCCGAATTTTTGCTATGTA
CCCTTGCGTCTTCTTGCACTCTCTCATTCTGCTGTATCTGCTGGAAGTAG
CCGCATTGCAGCCGACGGTATAAAGAGTTGTAAGGGCACTTTTCCAGGTA
TACATGTCGGTACAGTCTCTCGTTGCAGGAGTGTTCTTTACTCTTGCTCT
CCGCATAGGTCTGCTCGCAATTTGCCGATACCATACTACAAGCTCAGCAT
CTACCCGTTGTACCATTTGCCCCTGCAGGGATGATCCGCGCAATGCGCCG
GGAAATCGGCGCCCGGGACGACCGCGCCGCTGCCGCCGCCGCCACGGCCC
GCCGCCAGGAGGCGCAGGTCCGGCGCCTCCGGGACGAGCTGCGGGAGCTC
AGCGGCGTCAACCGGAGCTGGAGCTCTGCGCTGGTGGCGGCGGGGTCTCT
CGGATCTGGCGAGTCCTCGCGGGCGGCGGCGGGTGGTGTCACTGTGGGCG
CCGGCGACGACATGGGCGCCAATGGCGGTTGTGCCGGGGCGGGTGCTTCT
GCCGCGCCCCGCGCTACTGCGTCAGGAGCGGCGAAAGCGGGATCGGCGTC
TACTGCGAGAGCTGCTGCGGCGGCGACGGCAGCAGTAACGGCAGCAATGG
CTGTGGCAGCGACCGCTGGTGCGTCGGACGATGGAGGCGGCGGAGGAGCG
GCTACTGGGGACTTCACGGGGGCTAGCGGTACGTCGGTGGCAACGTCAGC
TCAGCGGACCCCGCCTCCGCCGCCGTGTCGAACGAACCTGCGGTCGCAAG
AGACTGAGAAGCCCATCATCAGGTCGCTATCGCCTCCATCGCCGCCCTCG
CCGGCGCCGCCGCCCGCGCTCCGCGCCTCTGCCAATCCGGCGTTCTCGCT
GGCCGCGGACAGCTGGCGGCGGTCGGCGGCTTCGACGGCGGCTCTGGCGC
TAAATATCGACATTGTGGCTGCAGCGGCGCAGAAGCTGCTGGCAGTGCAG
GCAGCAAACGCTCCCACCGTCGCCGTTCTTCCAAAGGAGCGGCGGCGCTC
CAGCGGCGCCAGCCTCGGCGGAAAGAGCAGGAGCGGGAAAAGCGGCGGCA
GCAGCGCTGCAGGAGGGAGCAGGCGGAGCTCCGGAGCTGCATCTGCCCTT
GGCGGAGAACAACAGATGAAAGGCAAGAAAATCGGCAAGCTGTAATAAAA
GCCAATTCTCCC back to topCoding sequence (CDS) from alignment at P-wetherbeei_contig973:3607..7768- >mRNA_P-wetherbeei_contig973.2.1 ID=mRNA_P-wetherbeei_contig973.2.1|Name=mRNA_P-wetherbeei_contig973.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=2727bp|location=Sequence derived from alignment at P-wetherbeei_contig973:3607..7768- (Phaeothamnion wetherbeei SAG_119_79)
ATGGGCAGTGAGGCCTTTCGCGCTGAAGTGGCGGCGCTCTTTGCCGAATT
CGGCGGCGGCGAGTTCGACGGCGGCGAACTTGAAGGCGGTGAATTGCACG
GCAGCGAATTACACGGCGTCGGCGAGTGCGGATACGTGCTTGGCGGCGGA
CCGGAGAAAGCATCGTGGCTGCCTCGAAGGAGGGGTGACAGCAATTCTGT
CATCACGGTGGCGGCGCCGGCAGCAACAGCGGCGGCAACGGTGGAGGCAA
CGATGACGGTGGAAGCGGCGTGGAGGGAAGTACCAGCGGCTGCGCCGTCA
GAAGGGCCGGCGCTGGCAGCGCCGCCGGCTGGTTCTGCGGCGGCGGTAGA
CACGGTGGCTGCTCCATCGTTCGAGGCGAAAGAAGCCTCGCTCCGAGCGG
AACTCGAAGTGTTGCGATCGGCGGCGTCAGAATCGGCGCGGCGCATCTCT
CAGCTGGAAGCAGAGCTTCGGCATGAACGATCTGCTGCCGCCGCCGCTGC
GACGACGGCGCAACTCGAAGCGGCGGCCGCGGCTGCCAACGCCGCGAGGC
TGTCAGAGGAGGCGGTGGTGCTGCGCGCGGCGGCCTCTGCCGCGAGGGAT
GAAGCCTCCGCGGGGCGGGAGGTGGCAATCGCCGTGGAAGCAGATGCCGG
CCAGCTGCGAAGCCGGGTGCAGTCCCTCGAAGTGAATCTGGCGGCCTGTC
GCCGCGAAATGGAGACGGCCCGTGGGCGGATGGCGACGGAATTGGCGGCG
GCTGCGAGGAAGGTGGCGGGATTGCAGGAGGAGCTGTCGTCTGCGAGTGC
GGCGGCAACCGCAGCGGCGGCCGAGGGGGTGAGGCATGAAAGCGAAGCGG
CGGCGGCACTTGAGGCGGAGCGGCAGCGTTCTGTCGTCGCCGAAGCGGCC
GCCAGGCGGGAAGCGGGAGCCGAGGCAGTGGAGCTGCGAACTAGGTTGTC
GGCATTGGTCAAGGAACACGCCGTCGCCACGGCGACGCTGATGCGGCGTC
ACAGGGAGGAGATGGACGCCGCTGCCGCTACGGCTCGTATCACCGACGAA
GCGCACGCTAGCGAACTCGACAAAGCGGTGGCCGCGTCAGCCACTGCAGC
CGCAGCGGCGGCGGCGGCGGCAGCCGAAAAATGGGAAGCGGAGCGGGTGG
CAGCGGCTGCGACGGCGTCGGCGACGGTGCTGAAGGAGCGCCTGGAGGCT
GCGCAAGAGGAGCTGCACGACGCCGCGTCCAGAGAAGGAGCCGCTGTGAC
GGCGGCGACGGAGCCACTGCGAACTCGGCTGTCGGAGATGGCGGCGACGC
TGGCAGCGGAAGAGGAACGGGCGTCAGCACTGCGCCGCAGTGTTCAGGCA
CAGGAGGACGAACAGCAGCGAACAGCGGCGGAAGCGGACGCGTCGCAGGA
GGCGGCCGTCGGAGCGGCAGCGGCGCTGCGCACGGAGCGCGCTGCATTAG
CAGCGCTGGTGGCGAAGCTGCGGGCGTGTGTCGGGGCAGAGATTGTGGCG
GTCGCACCGGCGCAAGAGCGGGCGAGAATCATGCACACGCCGCTCGCTGA
GCTGGAGGCGGCGGTGGCACAAGCGGTGCACCAGCGGCGGGCGTGGCGGG
AGCAGACAGCTGAAGCGGCCGCGCGGGCTGCAGAGCTCGAGGCTGCCGTG
CGGCGCCAGGGGGCCGCGCTAGAGCAGACGCGGGCGCGCTACGACAGTAC
CCTGGAAGAATTGGAGCGGACGCGAAAGCAGTCGGGCGAGCACCGGCAGC
GCGCGAATCAGGCGCAGGCAGAGCTGGCGCCGCTGCTGGCCGCCGTTTCG
GAGCAAGAAGGGATGATCCGCGCAATGCGCCGGGAAATCGGCGCCCGGGA
CGACCGCGCCGCTGCCGCCGCCGCCACGGCCCGCCGCCAGGAGGCGCAGG
TCCGGCGCCTCCGGGACGAGCTGCGGGAGCTCAGCGGCGTCAACCGGAGC
TGGAGCTCTGCGCTGGTGGCGGCGGGGTCTCTCGGATCTGGCGAGTCCTC
GCGGGCGGCGGCGGGTGGTGTCACTGTGGGCGCCGGCGACGACATGGGCG
CCAATGGCGGTTGTGCCGGGGCGGGTGCTTCTGCCGCGCCCCGCGCTACT
GCGTCAGGAGCGGCGAAAGCGGGATCGGCGTCTACTGCGAGAGCTGCTGC
GGCGGCGACGGCAGCAGTAACGGCAGCAATGGCTGTGGCAGCGACCGCTG
GTGCGTCGGACGATGGAGGCGGCGGAGGAGCGGCTACTGGGGACTTCACG
GGGGCTAGCGGTACGTCGGTGGCAACGTCAGCTCAGCGGACCCCGCCTCC
GCCGCCGTGTCGAACGAACCTGCGGTCGCAAGAGACTGAGAAGCCCATCA
TCAGGTCGCTATCGCCTCCATCGCCGCCCTCGCCGGCGCCGCCGCCCGCG
CTCCGCGCCTCTGCCAATCCGGCGTTCTCGCTGGCCGCGGACAGCTGGCG
GCGGTCGGCGGCTTCGACGGCGGCTCTGGCGCTAAATATCGACATTGTGG
CTGCAGCGGCGCAGAAGCTGCTGGCAGTGCAGGCAGCAAACGCTCCCACC
GTCGCCGTTCTTCCAAAGGAGCGGCGGCGCTCCAGCGGCGCCAGCCTCGG
CGGAAAGAGCAGGAGCGGGAAAAGCGGCGGCAGCAGCGCTGCAGGAGGGA
GCAGGCGGAGCTCCGGAGCTGCATCTGCCCTTGGCGGAGAACAACAGATG
AAAGGCAAGAAAATCGGCAAGCTGTAA back to top
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