prot_P-wetherbeei_contig9676.4.1 (polypeptide) Phaeothamnion wetherbeei SAG_119_79

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_P-wetherbeei_contig9676.4.1
Unique Nameprot_P-wetherbeei_contig9676.4.1
Typepolypeptide
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Sequence length143
Homology
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BLAST of mRNA_P-wetherbeei_contig9676.4.1 vs. uniprot
Match: UPI0018850E80 (leucine-rich repeat neuronal protein 2-like isoform X1 n=4 Tax=Pollicipes pollicipes TaxID=41117 RepID=UPI0018850E80)

HSP 1 Score: 66.6 bits (161), Expect = 4.610e-10
Identity = 43/89 (48.31%), Postives = 57/89 (64.04%), Query Frame = 0 
Query:   52 LSKLQHLDLSDNPGIGVLSGALPDGIGALFKLRILRLRGGHLPGLGKG-LGSLLSLTELDAGNNELAEVPPELFRLAELTVLRLDGNHI 139
            LSKL+ LDLS NP + VL       +  L +LR+LRL G  L  L  G L +L++L ELD G+N+LA VPP+L+    +T LRL+GN I
Sbjct:  166 LSKLRELDLSYNP-LSVLDHHTVLAVTELARLRVLRLAGTGLRQLPTGFLHALITLRELDLGDNQLAVVPPDLYNSHAITSLRLNGNPI 253
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig9676.4.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
UPI0018850E804.610e-1048.31leucine-rich repeat neuronal protein 2-like isofor... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR003591Leucine-rich repeat, typical subtypeSMARTSM00369LRR_typ_2coord: 27..50
e-value: 35.0
score: 8.8
coord: 103..126
e-value: 0.04
score: 23.1
coord: 52..76
e-value: 190.0
score: 2.9
IPR001611Leucine-rich repeatPFAMPF00560LRR_1coord: 54..72
e-value: 0.034
score: 14.7
IPR032675Leucine-rich repeat domain superfamilyGENE3D3.80.10.10Ribonuclease Inhibitorcoord: 18..142
e-value: 4.0E-22
score: 80.4
NoneNo IPR availablePANTHERPTHR48051FAMILY NOT NAMEDcoord: 27..143
NoneNo IPR availableSUPERFAMILY52058L domain-likecoord: 24..142

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig9676contigP-wetherbeei_contig9676:1931..2359 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig9676.4.1mRNA_P-wetherbeei_contig9676.4.1Phaeothamnion wetherbeei SAG_119_79mRNAP-wetherbeei_contig9676 1931..2359 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_P-wetherbeei_contig9676.4.1 ID=prot_P-wetherbeei_contig9676.4.1|Name=mRNA_P-wetherbeei_contig9676.4.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=143bp
AAAAAAAAAAAAAAGPTAALQVDLLPLRQLQRLQLDGLRLSAVPPAVASG
ALSKLQHLDLSDNPGIGVLSGALPDGIGALFKLRILRLRGGHLPGLGKGL
GSLLSLTELDAGNNELAEVPPELFRLAELTVLRLDGNHIAMLP
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR003591Leu-rich_rpt_typical-subtyp
IPR001611Leu-rich_rpt
IPR032675LRR_dom_sf