mRNA_P-wetherbeei_contig13117.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig13117.1.1
Unique NamemRNA_P-wetherbeei_contig13117.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig13117.1.1 vs. uniprot
Match: A0A6H5KIP7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KIP7_9PHAE)

HSP 1 Score: 151 bits (382), Expect = 2.030e-40
Identity = 70/104 (67.31%), Postives = 79/104 (75.96%), Query Frame = 1
Query:    1 EQVRKLTAVLLRGGVWCLNAGENYNVSLDTWWKFADDLQLTNVTHAYLSEHVLTPELKNEIRAVIRANRAKHTRHKSASNWHIIERCTNCWWNPSNSKELQAEL 312
            EQV  L  VL RG +WCLNAGENY V L TWW+F + ++ TNVTHAYLSEHV+T ELK  +R  IR NR KHTRHKSA+N  +I RCTN WWNP NSK LQAEL
Sbjct:  734 EQVGALAKVLRRGNIWCLNAGENYKVKLATWWQFVEAIKNTNVTHAYLSEHVITAELKKAMRKAIRDNRVKHTRHKSAANLEVIRRCTNMWWNPINSKFLQAEL 837          
BLAST of mRNA_P-wetherbeei_contig13117.1.1 vs. uniprot
Match: D7FZY3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZY3_ECTSI)

HSP 1 Score: 130 bits (327), Expect = 1.020e-33
Identity = 60/91 (65.93%), Postives = 68/91 (74.73%), Query Frame = 1
Query:    1 EQVRKLTAVLLRGGVWCLNAGENYNVSLDTWWKFADDLQLTNVTHAYLSEHVLTPELKNEIRAVIRANRAKHTRHKSASNWHIIERCTNCW 273
            EQV  L  VL RG +WCLNAGENY V L TWW+F + ++ TNVTHAYLSEHV+T ELK  +R  IR NR KHTRHKSASN  +I RCTN W
Sbjct:  362 EQVEALAKVLGRGNIWCLNAGENYKVKLATWWQFVEAIKNTNVTHAYLSEHVITAELKKAMRKAIRDNRVKHTRHKSASNLEVIRRCTNMW 452          
BLAST of mRNA_P-wetherbeei_contig13117.1.1 vs. uniprot
Match: A0A6H5JNB8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNB8_9PHAE)

HSP 1 Score: 132 bits (331), Expect = 1.590e-33
Identity = 61/106 (57.55%), Postives = 75/106 (70.75%), Query Frame = 1
Query:    1 EQVRKLTAVLLRGGVWCLNAGENYNVSLDTWWKFADDLQLTNVTHAYLSEHVLTPELKNEIRAVIRANRAKHTRHKSASNWHIIERCTNCWWNPSNSKELQAELAA 318
            EQ+ +L  VL RG +WCLNAGEN  +   TWW F +++Q TNVTHAYLSE  +   LKN ++  IR NR KH RH SASN  +I+RCT+ WWNP  SK+LQAEL A
Sbjct:  646 EQLMRLAEVLRRGLIWCLNAGENSEIKASTWWNFVEEIQNTNVTHAYLSEGSVPSGLKNAMQKAIRRNRLKHDRHLSASNVDVIQRCTHMWWNPIRSKKLQAELKA 751          
BLAST of mRNA_P-wetherbeei_contig13117.1.1 vs. uniprot
Match: A0A7S2G2D6_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2G2D6_9STRA)

HSP 1 Score: 127 bits (318), Expect = 1.570e-32
Identity = 58/105 (55.24%), Postives = 73/105 (69.52%), Query Frame = 1
Query:    4 QVRKLTAVLLRGGVWCLNAGENYNVSLDTWWKFADDLQLTNVTHAYLSEHVLTPELKNEIRAVIRANRAKHTRHKSASNWHIIERCTNCWWNPSNSKELQAELAA 318
            Q++KL+ VL  G +WCLN GENY ++   W +FAD L  TNVTH Y SEHV++ E K  +R +IRANRAKH+RH S  N  +I+RCTNCWWNP  S+ L    AA
Sbjct:  124 QLQKLSKVLQLGRIWCLNIGENYRITPGAWNQFADSLLATNVTHMYASEHVISVEQKTRMRDIIRANRAKHSRHNSIDNIAVIKRCTNCWWNPIQSRSLMGLRAA 228          
BLAST of mRNA_P-wetherbeei_contig13117.1.1 vs. uniprot
Match: A0A835ZG86_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZG86_9STRA)

HSP 1 Score: 127 bits (320), Expect = 4.820e-32
Identity = 58/104 (55.77%), Postives = 74/104 (71.15%), Query Frame = 1
Query:    1 EQVRKLTAVL-LRGGVWCLNAGENYNVSLDTWWKFADDLQLTNVTHAYLSEHVLTPELKNEIRAVIRANRAKHTRHKSASNWHIIERCTNCWWNPSNSKELQAE 309
            +Q+  L A+L     +WCLN GE Y V+LD WWKF ++L+ T+VTH YLSEHVLT +LK  +R  IRANRAKH  HK   N  +IERCTN WWNP N+++LQ +
Sbjct:  688 DQIDALAAILRTHDRLWCLNLGELYKVTLDRWWKFCEELRGTHVTHMYLSEHVLTADLKTAMRDAIRANRAKHALHKDVDNLAVIERCTNMWWNPINARDLQGD 791          
BLAST of mRNA_P-wetherbeei_contig13117.1.1 vs. uniprot
Match: A0A6H5K7R7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7R7_9PHAE)

HSP 1 Score: 127 bits (319), Expect = 6.620e-32
Identity = 61/106 (57.55%), Postives = 70/106 (66.04%), Query Frame = 1
Query:    1 EQVRKLTAVLLRGGVWCLNAGENYNVSLDTWWKFADDLQLTNVTHAYLSEHVLTPELKNEIRAVIRANRAKHTRHKSASNWHIIERCTNCWWNPSNSKELQAELAA 318
            EQ+  L  VL +G +WCLNAGEN  +   TW  F  ++  T VTHAYLSE  +   LK  +R  IRANR KHTRHKSASN  +I RCTN WWNP   KELQAEL A
Sbjct:  841 EQLMMLAKVLRKGNIWCLNAGENSKIKPSTWCDFVKEIDKTGVTHAYLSEECIPIGLKKAMRTAIRANRVKHTRHKSASNVKVIRRCTNMWWNPILCKELQAELKA 946          
BLAST of mRNA_P-wetherbeei_contig13117.1.1 vs. uniprot
Match: A0A6H5KUR8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUR8_9PHAE)

HSP 1 Score: 124 bits (312), Expect = 5.800e-31
Identity = 59/106 (55.66%), Postives = 70/106 (66.04%), Query Frame = 1
Query:    1 EQVRKLTAVLLRGGVWCLNAGENYNVSLDTWWKFADDLQLTNVTHAYLSEHVLTPELKNEIRAVIRANRAKHTRHKSASNWHIIERCTNCWWNPSNSKELQAELAA 318
            EQ+  L  VL +G +WCLNAGEN  +   TW  F  +++ T VTHAYLSE  +   LK  +R  IRANR KHTRHKSASN  +I +CTN WWNP   KE QAEL A
Sbjct:  781 EQLMMLARVLRKGNIWCLNAGENSKIKPSTWCDFVKEIEKTGVTHAYLSEECIPVGLKKAMRTAIRANRVKHTRHKSASNVKVIRQCTNMWWNPVLCKESQAELKA 886          
BLAST of mRNA_P-wetherbeei_contig13117.1.1 vs. uniprot
Match: A0A7S3Y3X2_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y3X2_HETAK)

HSP 1 Score: 115 bits (288), Expect = 3.730e-29
Identity = 54/104 (51.92%), Postives = 69/104 (66.35%), Query Frame = 1
Query:    4 QVRKLTAVLLRG-GVWCLNAGENYNVSLDTWWKFADDLQLTNVTHAYLSEHVLTPELKNEIRAVIRANRAKHTRHKSASNWHIIERCTNCWWNPSNSKELQAEL 312
            Q+ +L  VL RG  VW +N GEN+      W +FA+ L+ T+VTH Y+SE  ++  LK + R +IR NR KH RHKS  N  +IERCTNCWWNPSN +ELQ  L
Sbjct:  145 QLERLAQVLRRGLSVWSVNLGENWRPCAAAWERFAEALRYTHVTHLYISEKAISAGLKTKFRDIIRENRKKHDRHKSVDNLDVIERCTNCWWNPSNGRELQEAL 248          
BLAST of mRNA_P-wetherbeei_contig13117.1.1 vs. uniprot
Match: D8LFH6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFH6_ECTSI)

HSP 1 Score: 112 bits (280), Expect = 1.610e-27
Identity = 51/91 (56.04%), Postives = 64/91 (70.33%), Query Frame = 1
Query:    1 EQVRKLTAVLLRGGVWCLNAGENYNVSLDTWWKFADDLQLTNVTHAYLSEHVLTPELKNEIRAVIRANRAKHTRHKSASNWHIIERCTNCW 273
            EQ+R L  VL RG +WCLNAGEN  ++   WW F ++++ T+VTHAYLSE  +   L   ++  IRANRAKHTRHKSASN  +I RCTN W
Sbjct:  276 EQLRMLAKVLRRGNIWCLNAGENSGITPSAWWWFVEEIKTTSVTHAYLSEECIPCGLTETMQKAIRANRAKHTRHKSASNVEVIRRCTNMW 366          
BLAST of mRNA_P-wetherbeei_contig13117.1.1 vs. uniprot
Match: A0A1Z5JS48_FISSO (Uncharacterized protein n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JS48_FISSO)

HSP 1 Score: 112 bits (281), Expect = 8.320e-27
Identity = 54/106 (50.94%), Postives = 69/106 (65.09%), Query Frame = 1
Query:    1 EQVRKLTAVLLRGG--VWCLNAGENYNVSLDTWWKFADDLQLTNVTHAYLSEHVLTPELKNEIRAVIRANRAKHTRHKSASNWHIIERCTNCWWNPSNSKELQAEL 312
            EQ+  L  VL R    +WCLN GE Y V   TW KFA  L+ T +TH Y SEHV++ ELK++IR+ IR NR+KH+ H   SN   I +CT+CWWNP N+K L+  L
Sbjct:  550 EQMMSLLQVLQRSSCKIWCLNIGETYKVKQKTWKKFAIGLKKTKITHMYASEHVISTELKDQIRSTIRDNRSKHSMHCDPSNLDTIIKCTHCWWNPVNTKSLRPYL 655          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig13117.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 15
Match NameE-valueIdentityDescription
A0A6H5KIP7_9PHAE2.030e-4067.31Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FZY3_ECTSI1.020e-3365.93Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JNB8_9PHAE1.590e-3357.55Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S2G2D6_9STRA1.570e-3255.24Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A835ZG86_9STRA4.820e-3255.77Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A6H5K7R7_9PHAE6.620e-3257.55Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KUR8_9PHAE5.800e-3155.66Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S3Y3X2_HETAK3.730e-2951.92Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
D8LFH6_ECTSI1.610e-2756.04Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A1Z5JS48_FISSO8.320e-2750.94Uncharacterized protein n=1 Tax=Fistulifera solari... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig13117contigP-wetherbeei_contig13117:1015..1605 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D7FZY3
Model size318
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons2
Evalue1.67e-34
EggNOG OGs2BXB7@1|root,2S2EZ@2759|Eukaryota
Cds size318
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185974.4937503-CDS-P-wetherbeei_contig13117:1014..11581683185974.4937503-CDS-P-wetherbeei_contig13117:1014..1158Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig13117 1015..1158 -
1683185974.5016308-CDS-P-wetherbeei_contig13117:1431..16051683185974.5016308-CDS-P-wetherbeei_contig13117:1431..1605Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig13117 1432..1605 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig13117.1.1prot_P-wetherbeei_contig13117.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig13117 1015..1605 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig13117.1.1

>prot_P-wetherbeei_contig13117.1.1 ID=prot_P-wetherbeei_contig13117.1.1|Name=mRNA_P-wetherbeei_contig13117.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=106bp
EQVRKLTAVLLRGGVWCLNAGENYNVSLDTWWKFADDLQLTNVTHAYLSE
HVLTPELKNEIRAVIRANRAKHTRHKSASNWHIIERCTNCWWNPSNSKEL
QAELAA
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mRNA from alignment at P-wetherbeei_contig13117:1015..1605-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig13117.1.1 ID=mRNA_P-wetherbeei_contig13117.1.1|Name=mRNA_P-wetherbeei_contig13117.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=591bp|location=Sequence derived from alignment at P-wetherbeei_contig13117:1015..1605- (Phaeothamnion wetherbeei SAG_119_79)
GAGCAGGTGCGCAAGCTAACGGCGGTGCTGTTGCGCGGCGGCGTGTGGTG CCTCAATGCCGGGGAGAACTACAATGTGTCGCTGGACACATGGTGGAAGT TTGCCGACGACCTGCAGCTAACCAACGTCACGCACGCCTATCTCAGTGAG CACGTTCTCACGCCCGAACTCAAGGTGTGCTCAGTGATGCTCTCTGTTGC TGCTCTTTTTCTGTTTCTGTGTGGCTATGGTTTTGGTCTTCTATGTGAGA GTGTGTGTTTTTCCGCGTTTTCCCTTCCTTGTTATTATGCTCGATGATGT AATCTTGGAGTTGGAGGTGCTGCTGCCGTGGCTTGCGGCGTCCTTTGTTG CTGGAAAGTGTCTTGTTCGTACTTCAAATCGTTTCTGTCTCTCCATCTCT TTCTCCCTTTTCCATTCCCGGACTCTTTCTCCGCATTCCGCGAGCAGAAC GAGATCCGCGCCGTGATCCGCGCCAATCGCGCTAAGCACACACGGCACAA GAGCGCCTCCAACTGGCACATCATTGAGCGCTGCACGAACTGCTGGTGGA ACCCCAGTAACTCCAAGGAGCTGCAGGCGGAGCTGGCGGCC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig13117:1015..1605-

>mRNA_P-wetherbeei_contig13117.1.1 ID=mRNA_P-wetherbeei_contig13117.1.1|Name=mRNA_P-wetherbeei_contig13117.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=318bp|location=Sequence derived from alignment at P-wetherbeei_contig13117:1015..1605- (Phaeothamnion wetherbeei SAG_119_79)
GAGCAGGTGCGCAAGCTAACGGCGGTGCTGTTGCGCGGCGGCGTGTGGTG
CCTCAATGCCGGGGAGAACTACAATGTGTCGCTGGACACATGGTGGAAGT
TTGCCGACGACCTGCAGCTAACCAACGTCACGCACGCCTATCTCAGTGAG
CACGTTCTCACGCCCGAACTCAAGAACGAGATCCGCGCCGTGATCCGCGC
CAATCGCGCTAAGCACACACGGCACAAGAGCGCCTCCAACTGGCACATCA
TTGAGCGCTGCACGAACTGCTGGTGGAACCCCAGTAACTCCAAGGAGCTG
CAGGCGGAGCTGGCGGCC
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