mRNA_P-wetherbeei_contig13079.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig13079.1.1
Unique NamemRNA_P-wetherbeei_contig13079.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig13079.1.1 vs. uniprot
Match: A0A3C0TTD4_9PROT (Uncharacterized protein n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A3C0TTD4_9PROT)

HSP 1 Score: 182 bits (462), Expect = 9.900e-58
Identity = 84/109 (77.06%), Postives = 97/109 (88.99%), Query Frame = 1
Query:    1 MTTQENLRPIATKILYEDDEVRVWDQVINEGETLGKHHHELDYVIVNVTDSGPFDVEFFDSDGTSKKASFKFPDSKRGGAMLVEKGHVEIAHNRGPRFRAILVELKEPK 327
            M+ QE L PIAT+I++EDDEVR+WDQVI EGETLGKHHHELDYV+VNVTD GPF+VEFFDS+G SKK S  FP+++RGG MLVEKGHVEIA N GPR+RAILVELKEP+
Sbjct:    1 MSAQEKLNPIATRIIFEDDEVRIWDQVIGEGETLGKHHHELDYVLVNVTDVGPFEVEFFDSEGNSKKHSLTFPNARRGGTMLVEKGHVEIARNLGPRYRAILVELKEPE 109          
BLAST of mRNA_P-wetherbeei_contig13079.1.1 vs. uniprot
Match: A0A7Y3GWF9_9DELT (Uncharacterized protein n=1 Tax=Myxococcales bacterium TaxID=2026763 RepID=A0A7Y3GWF9_9DELT)

HSP 1 Score: 108 bits (271), Expect = 1.280e-28
Identity = 52/105 (49.52%), Postives = 71/105 (67.62%), Query Frame = 1
Query:   13 ENLRPIATKILYEDDEVRVWDQVINEGETLGKHHHELDYVIVNVTDSGPFDVEFFDSDGTSKKASFKFPDSKRGGAMLVEKGHVEIAHNRGPRFRAILVELKEPK 327
            E+L PIATK++YEDD VRVW Q +  G  + +H HE DY +VNV  +GP DV F +  G     +F F + + G ++ + KGH+E AHNRG  +RA+LVELK+PK
Sbjct:    3 ESLHPIATKVVYEDDYVRVWHQQVPAGGRIERHLHEHDYFLVNVAGNGPLDVTFHEGTGGELGDAFTF-EPQPGRSVFIPKGHMETAHNRGEEYRAVLVELKKPK 106          
BLAST of mRNA_P-wetherbeei_contig13079.1.1 vs. uniprot
Match: A0A2E5M320_9GAMM (Uncharacterized protein n=1 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A2E5M320_9GAMM)

HSP 1 Score: 104 bits (259), Expect = 7.200e-27
Identity = 53/102 (51.96%), Postives = 65/102 (63.73%), Query Frame = 1
Query:   13 ENLRPIATKILYEDDEVRVWDQVINEGETLGKHHHELDYVIVNVTDSGPFDVEFFDSDGTSKKASFKFPDSKRGGAMLVEKGHVEIAHNRGPRFRAILVELK 318
            + L PIAT+I+YED+ VRVW+QV+  G  + KH H  DY +VNVT  GP DV F D  G    A   F   + G A  + +GHVE AHNRG  +RAILVELK
Sbjct:    3 DELAPIATEIIYEDEHVRVWNQVVPAGGRIEKHEHTXDYFLVNVTGDGPIDVTFHDGTGGDFGAHTSFVP-RPGRADYIXRGHVETAHNRGDEYRAILVELK 103          
BLAST of mRNA_P-wetherbeei_contig13079.1.1 vs. uniprot
Match: A0A523M342_9GAMM (Uncharacterized protein n=1 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A523M342_9GAMM)

HSP 1 Score: 104 bits (259), Expect = 7.200e-27
Identity = 49/102 (48.04%), Postives = 67/102 (65.69%), Query Frame = 1
Query:   13 ENLRPIATKILYEDDEVRVWDQVINEGETLGKHHHELDYVIVNVTDSGPFDVEFFDSDGTSKKASFKFPDSKRGGAMLVEKGHVEIAHNRGPRFRAILVELK 318
            E L PIAT++L+EDD VR+W+QV+  G  + +H HE DY ++NV  +GP +VEF +  G      F F  +  G A  +EKGH+E AHN G  +RA+LVELK
Sbjct:    3 EELSPIATELLFEDDHVRIWNQVVPSGADIPRHRHEHDYFLLNVAGTGPIEVEFHEGTGGPLGEHFSFNPTP-GQADYIEKGHIETAHNSGDEYRAVLVELK 103          
BLAST of mRNA_P-wetherbeei_contig13079.1.1 vs. uniprot
Match: A0A7C7SBZ1_9GAMM (Uncharacterized protein n=1 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A7C7SBZ1_9GAMM)

HSP 1 Score: 100 bits (249), Expect = 2.250e-25
Identity = 46/98 (46.94%), Postives = 69/98 (70.41%), Query Frame = 1
Query:   28 IATKILYEDDEVRVWDQVINEGETLGKHHHELDYVIVNVTDSGPFDVEFFDSDGTSKKASFKFPDSKRGGAMLVEKGHVEIAHNRGPRFRAILVELKE 321
            IAT++++ED+EVRVW+QV+  GE + KH H+LDY ++N++  GP  V+F +  G S   +F+F   K G +  ++KGH+E AHN G  + AILVELK+
Sbjct:    6 IATEVVFEDEEVRVWNQVVRGGEDIPKHEHKLDYFLLNISGEGPIQVQFHNGTGGSLGETFEF-FPKPGSSDFIKKGHIETAHNAGGDYHAILVELKK 102          
BLAST of mRNA_P-wetherbeei_contig13079.1.1 vs. uniprot
Match: A0A3D0ZYQ3_9GAMM (Uncharacterized protein n=2 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A3D0ZYQ3_9GAMM)

HSP 1 Score: 98.6 bits (244), Expect = 1.370e-24
Identity = 49/101 (48.51%), Postives = 65/101 (64.36%), Query Frame = 1
Query:   19 LRPIATKILYEDDEVRVWDQVINEGETLGKHHHELDYVIVNVTDSGPFDVEFFDSDGTSKKASFKFPDSKRGGAMLVEKGHVEIAHNRGPRFRAILVELKE 321
            L  IAT++++EDDEVRVW+QV+  G  + KH H+ DY +VNV   GP  V+F D  G +    F+F  S  G A  + KGH+E A N G  +RAILVELK+
Sbjct:    5 LSDIATQVVFEDDEVRVWNQVVPAGGEISKHEHKHDYFLVNVAGEGPIRVQFHDGSGGALGDQFEFNPSP-GTADFIRKGHIETATNEGDEYRAILVELKK 104          
BLAST of mRNA_P-wetherbeei_contig13079.1.1 vs. uniprot
Match: A0A2A4LZX5_9GAMM (Uncharacterized protein n=1 Tax=Cellvibrionales bacterium TaxID=2026722 RepID=A0A2A4LZX5_9GAMM)

HSP 1 Score: 90.9 bits (224), Expect = 1.740e-21
Identity = 51/106 (48.11%), Postives = 65/106 (61.32%), Query Frame = 1
Query:    7 TQENLRPIATKILYEDDEVRVWDQVINEGETLGKHHHELDYVIVNVTDSGPFDVEFFDSDGTSKKASFKFPDSKRGGAMLVEKGHVEIAHNRGP-RFRAILVELKE 321
            T+ NL PIATK+LYEDDEVR+WDQV+  G  LG HHHE DY IV V +    + +    + T         + +RG    V+KG VE A N+   RFRAILVE+K+
Sbjct:    6 TESNLGPIATKVLYEDDEVRIWDQVMPSGHHLGPHHHECDYAIVCV-EGDRVEADTLPGNATGHDGHMDV-EVERGKVFWVKKGGVEEAFNKSDKRFRAILVEMKQ 109          
BLAST of mRNA_P-wetherbeei_contig13079.1.1 vs. uniprot
Match: A0A2E3NK05_9DELT (Uncharacterized protein n=1 Tax=Deltaproteobacteria bacterium TaxID=2026735 RepID=A0A2E3NK05_9DELT)

HSP 1 Score: 85.1 bits (209), Expect = 4.370e-19
Identity = 51/105 (48.57%), Postives = 62/105 (59.05%), Query Frame = 1
Query:   19 LRPIATKILYEDDEVRVWDQVINEGETLGKHHHELDYVIVNVTDSGPFDV---EFFDSDGTSKKASFKFPDSKRGGAMLVEKGHVEIAHNRGPR-FRAILVELKE 321
            L PIATK+LYED+ VR+WDQ+I  GET G HHH L Y +V V +  P DV   E F     S+  S   PD     A ++E G  E A N G R +RAILVE K+
Sbjct:   16 LGPIATKVLYEDERVRIWDQLIEPGETTGPHHHALPYALVTV-EGAPLDVIPVEGFPMMHGSETLSVDLPDRT---ASVLEAGSYEDARNTGDRPYRAILVEFKQ 116          
BLAST of mRNA_P-wetherbeei_contig13079.1.1 vs. uniprot
Match: A0A3C1FJB0_9PROT (Uncharacterized protein n=3 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A3C1FJB0_9PROT)

HSP 1 Score: 78.2 bits (191), Expect = 1.630e-16
Identity = 46/103 (44.66%), Postives = 64/103 (62.14%), Query Frame = 1
Query:   19 LRPIATKILYEDDEVRVWDQVINEGETLGKHHHELDYVIVNVTDSGPFDVEFFDSDGTSKKASFKFP-DSKRGGAMLVEKGHVEIAHNRGPR-FRAILVELKE 321
            L PIATK+LYEDD++R+WDQ +  G+ L  H HE DY++ +V  SG   +E     G   +   +   + +RG A+LV KG VE A N G + FRAIL+E K+
Sbjct:   10 LGPIATKVLYEDDDIRIWDQRLEPGQLLPPHKHECDYLLCDV--SGDL-IEAESLPGNEGEFEGRIELNVRRGNAILVRKGGVEQARNIGKQPFRAILIEYKD 109          
BLAST of mRNA_P-wetherbeei_contig13079.1.1 vs. uniprot
Match: A0A524N669_9DELT (Uncharacterized protein n=1 Tax=Myxococcales bacterium TaxID=2026763 RepID=A0A524N669_9DELT)

HSP 1 Score: 70.1 bits (170), Expect = 3.240e-13
Identity = 42/103 (40.78%), Postives = 61/103 (59.22%), Query Frame = 1
Query:   25 PIATKILYEDDEVRVWDQVINEGETLGKHHHELDYVIVNVTDSGPFDVEFFDSDGT----SKKASFKFPDSKRGGAMLVEKGHVEIAHNRGPR-FRAILVELK 318
            P+AT+ILYEDD+VR+WDQ +  G++   H HE DY +++V +    +VE  +        +  ++ + P  KRG    VEKG VE A N G   +R ILVE+K
Sbjct:   20 PLATRILYEDDQVRIWDQRLAPGDSTATHRHEHDYALLDV-EGERLEVELLEGPHLELLGAGNSTLELP-VKRGQVYWVEKGSVERAVNTGASSYRGILVEVK 120          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig13079.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A3C0TTD4_9PROT9.900e-5877.06Uncharacterized protein n=1 Tax=Alphaproteobacteri... [more]
A0A7Y3GWF9_9DELT1.280e-2849.52Uncharacterized protein n=1 Tax=Myxococcales bacte... [more]
A0A2E5M320_9GAMM7.200e-2751.96Uncharacterized protein n=1 Tax=Gammaproteobacteri... [more]
A0A523M342_9GAMM7.200e-2748.04Uncharacterized protein n=1 Tax=Gammaproteobacteri... [more]
A0A7C7SBZ1_9GAMM2.250e-2546.94Uncharacterized protein n=1 Tax=Gammaproteobacteri... [more]
A0A3D0ZYQ3_9GAMM1.370e-2448.51Uncharacterized protein n=2 Tax=Gammaproteobacteri... [more]
A0A2A4LZX5_9GAMM1.740e-2148.11Uncharacterized protein n=1 Tax=Cellvibrionales ba... [more]
A0A2E3NK05_9DELT4.370e-1948.57Uncharacterized protein n=1 Tax=Deltaproteobacteri... [more]
A0A3C1FJB0_9PROT1.630e-1644.66Uncharacterized protein n=3 Tax=Alphaproteobacteri... [more]
A0A524N669_9DELT3.240e-1340.78Uncharacterized protein n=1 Tax=Myxococcales bacte... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig13079contigP-wetherbeei_contig13079:116..445 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog1463820.JOGW01000002_gene5849
PFAMs3-HAO,Cupin_2
Model size330
Max annot lvl2|Bacteria
KEGG koko:K21700
Hectar predicted targeting categoryother localisation
Exons1
Evalue8.2e-10
EggNOG OGsCOG1917@1|root,COG1917@2|Bacteria
DescriptionCupin 2, conserved barrel domain protein
Cds size330
COG categoryL
BRITEko00000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185973.1331215-CDS-P-wetherbeei_contig13079:115..4451683185973.1331215-CDS-P-wetherbeei_contig13079:115..445Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig13079 116..445 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig13079.1.1prot_P-wetherbeei_contig13079.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig13079 116..445 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig13079.1.1

>prot_P-wetherbeei_contig13079.1.1 ID=prot_P-wetherbeei_contig13079.1.1|Name=mRNA_P-wetherbeei_contig13079.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=110bp
MTTQENLRPIATKILYEDDEVRVWDQVINEGETLGKHHHELDYVIVNVTD
SGPFDVEFFDSDGTSKKASFKFPDSKRGGAMLVEKGHVEIAHNRGPRFRA
ILVELKEPK*
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mRNA from alignment at P-wetherbeei_contig13079:116..445+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig13079.1.1 ID=mRNA_P-wetherbeei_contig13079.1.1|Name=mRNA_P-wetherbeei_contig13079.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=330bp|location=Sequence derived from alignment at P-wetherbeei_contig13079:116..445+ (Phaeothamnion wetherbeei SAG_119_79)
ATGACAACACAGGAAAATTTACGCCCGATCGCTACTAAAATTCTGTATGA AGACGATGAGGTCCGTGTGTGGGATCAGGTGATAAACGAAGGCGAAACCC TGGGAAAGCATCATCACGAGCTGGATTATGTCATTGTCAATGTAACGGAT TCCGGTCCATTCGATGTCGAATTTTTCGATAGCGACGGCACAAGCAAAAA AGCCAGCTTCAAATTTCCGGATTCCAAACGCGGCGGCGCGATGTTGGTGG AAAAAGGCCATGTGGAAATCGCCCACAATCGCGGCCCGCGTTTTCGCGCC ATTCTGGTTGAACTGAAAGAGCCAAAATAG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig13079:116..445+

>mRNA_P-wetherbeei_contig13079.1.1 ID=mRNA_P-wetherbeei_contig13079.1.1|Name=mRNA_P-wetherbeei_contig13079.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=330bp|location=Sequence derived from alignment at P-wetherbeei_contig13079:116..445+ (Phaeothamnion wetherbeei SAG_119_79)
ATGACAACACAGGAAAATTTACGCCCGATCGCTACTAAAATTCTGTATGA
AGACGATGAGGTCCGTGTGTGGGATCAGGTGATAAACGAAGGCGAAACCC
TGGGAAAGCATCATCACGAGCTGGATTATGTCATTGTCAATGTAACGGAT
TCCGGTCCATTCGATGTCGAATTTTTCGATAGCGACGGCACAAGCAAAAA
AGCCAGCTTCAAATTTCCGGATTCCAAACGCGGCGGCGCGATGTTGGTGG
AAAAAGGCCATGTGGAAATCGCCCACAATCGCGGCCCGCGTTTTCGCGCC
ATTCTGGTTGAACTGAAAGAGCCAAAATAG
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