mRNA_P-wetherbeei_contig1024.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig1024.1.1
Unique NamemRNA_P-wetherbeei_contig1024.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig1024.1.1 vs. uniprot
Match: A0A7S1CLD0_9STRA (Hypothetical protein n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1CLD0_9STRA)

HSP 1 Score: 65.5 bits (158), Expect = 6.890e-12
Identity = 36/58 (62.07%), Postives = 46/58 (79.31%), Query Frame = 3 
Query:   72 VVEVLPKSGLVYSEKSALTEVLCKPKLLPIKSLAQEKLEKLVQ--AATQAADPEEELE 239
            + EVLPK+GLVYSEK  L+E+LCKPK++PIKSL  EKLE++ Q  AAT+AA  + E E
Sbjct:    5 IAEVLPKAGLVYSEKGNLSEILCKPKIMPIKSLTLEKLEQMEQEAAATEAARGDMEAE 62
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BLAST of mRNA_P-wetherbeei_contig1024.1.1 vs. uniprot
Match: A0A835Z1E9_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z1E9_9STRA)

HSP 1 Score: 61.2 bits (147), Expect = 1.370e-10
Identity = 33/52 (63.46%), Postives = 40/52 (76.92%), Query Frame = 3 
Query:   78 EVLPKSGLVYSEKSALTEVLCKPKLLPIKSLAQEKLEKLVQAATQAADPEEE 233
            EV+ K GLV+SEK +L EVLCKPKLLPIKS+A EKLE L  AA +  +P+ E
Sbjct:    8 EVIAKKGLVFSEKPSLHEVLCKPKLLPIKSVALEKLEALEAAANRPPEPQSE 59
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BLAST of mRNA_P-wetherbeei_contig1024.1.1 vs. uniprot
Match: A0A7S2GMJ4_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2GMJ4_9STRA)

HSP 1 Score: 62.0 bits (149), Expect = 2.400e-10
Identity = 37/68 (54.41%), Postives = 48/68 (70.59%), Query Frame = 3 
Query:   60 SATG---VVEVLPKSGLVYSEKSALTEVLCKPKLLPIKSLAQEKLEKLVQAATQAADPEEELEKPEGR 254
            S TG   + EVLPK+GLVYSEK +L+E+LCKPK+LPIKS+A + LE  +Q A   A+ EE     EG+
Sbjct:   49 SGTGRLQISEVLPKNGLVYSEKGSLSEILCKPKILPIKSVALQTLEDKLQEAQLDAEIEEAKVTEEGK 116
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BLAST of mRNA_P-wetherbeei_contig1024.1.1 vs. uniprot
Match: A0A0M0LPT4_9EUKA (Bbsome-interacting protein 1-like protein n=2 Tax=Chrysochromulina tobinii TaxID=1460289 RepID=A0A0M0LPT4_9EUKA)

HSP 1 Score: 59.7 bits (143), Expect = 5.960e-10
Identity = 29/45 (64.44%), Postives = 39/45 (86.67%), Query Frame = 3 
Query:   72 VVEVLPKSGLVYSEKSALTEVLCKPKLLPIKSLAQEKLEKLVQAA 206
            ++EVLPK+GLVYSEK  L+EVLCKPK++PIKS++ E+LE + Q A
Sbjct:   11 LLEVLPKAGLVYSEKGNLSEVLCKPKIMPIKSVSLERLEAMEQQA 55
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BLAST of mRNA_P-wetherbeei_contig1024.1.1 vs. uniprot
Match: A0A6H5KLR6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KLR6_9PHAE)

HSP 1 Score: 59.7 bits (143), Expect = 6.410e-10
Identity = 28/42 (66.67%), Postives = 36/42 (85.71%), Query Frame = 3 
Query:   63 ATGVVEVLPKSGLVYSEKSALTEVLCKPKLLPIKSLAQEKLE 188
            A  + E+LPK+GLVYSEK+ L+EVLCKPKL+PIKS+  +KLE
Sbjct:   14 AASLAELLPKNGLVYSEKTTLSEVLCKPKLMPIKSITLQKLE 55
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BLAST of mRNA_P-wetherbeei_contig1024.1.1 vs. uniprot
Match: R1EVH0_EMIHU (Uncharacterized protein n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=R1EVH0_EMIHU)

HSP 1 Score: 59.7 bits (143), Expect = 9.710e-10
Identity = 30/46 (65.22%), Postives = 38/46 (82.61%), Query Frame = 3 
Query:   78 EVLPKSGLVYSEKSALTEVLCKPKLLPIKSLAQEKLEKLVQAATQA 215
            EVLPK+GLV+SEK +L  VLCKPKL+PIKSL+ EK+E++  AA  A
Sbjct:   10 EVLPKAGLVFSEKGSLAPVLCKPKLMPIKSLSLEKIEQMESAAAAA 55
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BLAST of mRNA_P-wetherbeei_contig1024.1.1 vs. uniprot
Match: A0A7S2R5F7_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2R5F7_9STRA)

HSP 1 Score: 60.1 bits (144), Expect = 9.820e-10
Identity = 31/52 (59.62%), Postives = 41/52 (78.85%), Query Frame = 3 
Query:   78 EVLPKSGLVYSEKSALTEVLCKPKLLPIKSLAQEKLEKLVQAATQAADPEEE 233
            E+LPKSGLVYSEK +L+EVLCKPK++PIKSL+ ++ E+  QA    A+ E E
Sbjct:   43 ELLPKSGLVYSEKGSLSEVLCKPKIMPIKSLSIQRQEERRQALADQAESERE 94
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BLAST of mRNA_P-wetherbeei_contig1024.1.1 vs. uniprot
Match: J9HZC4_9SPIT (Uncharacterized protein n=1 Tax=Oxytricha trifallax TaxID=1172189 RepID=J9HZC4_9SPIT)

HSP 1 Score: 58.9 bits (141), Expect = 1.090e-9
Identity = 25/41 (60.98%), Postives = 38/41 (92.68%), Query Frame = 3 
Query:   72 VVEVLPKSGLVYSEKSALTEVLCKPKLLPIKSLAQEKLEKL 194
            + E++PK+GLVYSEK+AL+E+LCKPK+LP+KS+  +KLE++
Sbjct:   15 IKEIMPKAGLVYSEKAALSEILCKPKILPLKSVTLQKLEQM 55
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BLAST of mRNA_P-wetherbeei_contig1024.1.1 vs. uniprot
Match: A0A2J8AHG4_9CHLO (BBSome-interacting protein 1 n=1 Tax=Tetrabaena socialis TaxID=47790 RepID=A0A2J8AHG4_9CHLO)

HSP 1 Score: 58.9 bits (141), Expect = 1.290e-9
Identity = 28/42 (66.67%), Postives = 36/42 (85.71%), Query Frame = 3 
Query:   69 GVVEVLPKSGLVYSEKSALTEVLCKPKLLPIKSLAQEKLEKL 194
            GV EVLPK+GLV SEK  LTE+LCKPKL+P+KS+  +KLE++
Sbjct:    8 GVKEVLPKAGLVVSEKGNLTEILCKPKLMPLKSITLQKLEEM 49
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BLAST of mRNA_P-wetherbeei_contig1024.1.1 vs. uniprot
Match: A0A5A8DAU6_CAFRO (Uncharacterized protein n=1 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8DAU6_CAFRO)

HSP 1 Score: 60.1 bits (144), Expect = 1.650e-9
Identity = 30/58 (51.72%), Postives = 42/58 (72.41%), Query Frame = 3 
Query:   72 VVEVLPKSGLVYSEKSALTEVLCKPKLLPIKSLAQEKLEKLVQAATQAADPEEELEKP 245
            + E+LP  GLVYSE+  L+EV+CKPK+LPIKS+  E+LE+L + A +AA     + KP
Sbjct:   20 IAELLPLDGLVYSERQELSEVMCKPKILPIKSVTMERLEQLEEDAAKAAREARTVSKP 77
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1024.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S1CLD0_9STRA6.890e-1262.07Hypothetical protein n=1 Tax=Bicosoecida sp. CB-20... [more]
A0A835Z1E9_9STRA1.370e-1063.46Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S2GMJ4_9STRA2.400e-1054.41Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A0M0LPT4_9EUKA5.960e-1064.44Bbsome-interacting protein 1-like protein n=2 Tax=... [more]
A0A6H5KLR6_9PHAE6.410e-1066.67Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
R1EVH0_EMIHU9.710e-1065.22Uncharacterized protein n=1 Tax=Emiliania huxleyi ... [more]
A0A7S2R5F7_9STRA9.820e-1059.62Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
J9HZC4_9SPIT1.090e-960.98Uncharacterized protein n=1 Tax=Oxytricha trifalla... [more]
A0A2J8AHG4_9CHLO1.290e-966.67BBSome-interacting protein 1 n=1 Tax=Tetrabaena so... [more]
A0A5A8DAU6_CAFRO1.650e-951.72Uncharacterized protein n=1 Tax=Cafeteria roenberg... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1024contigP-wetherbeei_contig1024:1643..1923 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog112098.XP_008611155.1
PFAMsBBIP10
Model size283
Max annot lvl2759|Eukaryota
KEGG koko:K19399
Hectar predicted targeting categoryother localisation
GOsGO:0005575,GO:0005623,GO:0005929,GO:0006996,GO:0008104,GO:0008150,GO:0009987,GO:0016043,GO:0022607,GO:0030030,GO:0030031,GO:0032991,GO:0033036,GO:0033365,GO:0034464,GO:0034613,GO:0042995,GO:0043226,GO:0044085,GO:0044422,GO:0044441,GO:0044463,GO:0044464,GO:0044782,GO:0051179,GO:0051641,GO:0060271,GO:0061512,GO:0070727,GO:0070925,GO:0071840,GO:0072657,GO:0097499,GO:0097500,GO:0120025,GO:0120031,GO:0120036,GO:0120038,GO:1903441,GO:1990778
Exons1
Evalue6.74e-10
EggNOG OGs2D0C2@1|root,2SDMB@2759|Eukaryota
Descriptionreceptor localization to non-motile cilium
Cds size225
COG categoryS
BRITEko00000,ko03036
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185860.5498316-CDS-P-wetherbeei_contig1024:1642..18671683185860.5498316-CDS-P-wetherbeei_contig1024:1642..1867Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1024 1643..1867 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185860.5584292-UTR-P-wetherbeei_contig1024:1867..19231683185860.5584292-UTR-P-wetherbeei_contig1024:1867..1923Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1024 1868..1923 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1024.1.1prot_P-wetherbeei_contig1024.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig1024 1643..1867 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig1024.1.1

>prot_P-wetherbeei_contig1024.1.1 ID=prot_P-wetherbeei_contig1024.1.1|Name=mRNA_P-wetherbeei_contig1024.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=75bp
MSATGVVEVLPKSGLVYSEKSALTEVLCKPKLLPIKSLAQEKLEKLVQAA
TQAADPEEELEKPEGRQSGERGRRG
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mRNA from alignment at P-wetherbeei_contig1024:1643..1923-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig1024.1.1 ID=mRNA_P-wetherbeei_contig1024.1.1|Name=mRNA_P-wetherbeei_contig1024.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=281bp|location=Sequence derived from alignment at P-wetherbeei_contig1024:1643..1923- (Phaeothamnion wetherbeei SAG_119_79)
CGGTCCCTTTTTTCAAACTCCTTCACGTCGACGACGAGACGAAGTCGTAA
CGCACGATGAGCGCGACCGGCGTCGTCGAGGTCCTGCCCAAGAGTGGGCT
TGTTTACAGCGAGAAGTCCGCCTTGACCGAAGTTCTGTGCAAGCCCAAGC
TCCTGCCAATCAAGAGCCTCGCTCAGGAGAAGCTCGAAAAGCTTGTGCAG
GCAGCGACGCAGGCAGCAGATCCCGAGGAAGAACTGGAGAAGCCAGAAGG
ACGGCAGTCGGGTGAGCGAGGCAGACGCGGC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig1024:1643..1923-

>mRNA_P-wetherbeei_contig1024.1.1 ID=mRNA_P-wetherbeei_contig1024.1.1|Name=mRNA_P-wetherbeei_contig1024.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=225bp|location=Sequence derived from alignment at P-wetherbeei_contig1024:1643..1923- (Phaeothamnion wetherbeei SAG_119_79)
ATGAGCGCGACCGGCGTCGTCGAGGTCCTGCCCAAGAGTGGGCTTGTTTA
CAGCGAGAAGTCCGCCTTGACCGAAGTTCTGTGCAAGCCCAAGCTCCTGC
CAATCAAGAGCCTCGCTCAGGAGAAGCTCGAAAAGCTTGTGCAGGCAGCG
ACGCAGGCAGCAGATCCCGAGGAAGAACTGGAGAAGCCAGAAGGACGGCA
GTCGGGTGAGCGAGGCAGACGCGGC
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