mRNA_P-wetherbeei_contig130.8.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig130.8.1
Unique NamemRNA_P-wetherbeei_contig130.8.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
[Close]
BLAST of mRNA_P-wetherbeei_contig130.8.1 vs. uniprot
Match: A0A7S3HAE5_9STRA (Hypothetical protein (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HAE5_9STRA)

HSP 1 Score: 115 bits (289), Expect = 8.470e-24
Identity = 117/447 (26.17%), Postives = 159/447 (35.57%), Query Frame = 2 
Query:  221 GAPTFGACCYTNGTFNSGGLIGFHDKQRPRQKPIYKRHRVVLGNSWPSSSGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXESFAAFINANEVYPGIIVTQCPLLGTPHDAGPVETLTDWKRMVVEQNVSLVVQLHPYATVTAETAAVXXXXXXXXXXXXXXXXXXXXXXXXXSETGGRGVAAVGAAVNKSGCEDRPEVFCRNLCIDWVGRIFSDEHHPLTTSFPAVTNLVTCPRRGGSSDGAGSFDVCSAAGGGRGSGAGKIGGVSLSSGDGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYIHYEYDVGVGRHVRHLWYRGWRDFEAPPKADRAALREVVAEVARVIAAGESKVLVVCLSGRGRSGTLVAAALGMLGRFRTTGQLVDAIVRLREVRDSMVETPGHLLFLLQFLGLPMIA 1561
            G  +FGACC+ N  FNSG LIG++DK +   KPIYK+ R+VLG++   +                                 ES+ +FINAN+++P +I TQCPL  T  D           RM+VEQN+SL +QL P+   +                               S+T    +  +    N      +P        +D    IF   H P   +    TN          +                      I G S+S  D                                                        I  E      ++V  +WY  W+DF  P   D   + +V     + I  G  KVLV CLSGRGRSGT  A  +G L    T  +LVD IV +RE RD M+ETP    F+ + L LP  A
Sbjct:  114 GGRSFGACCFINNEFNSGSLIGYYDKTQHAPKPIYKKSRIVLGDAIGGTD--------------------------------ESYESFINANQIHPNLIATQCPLSNTVGDV---------LRMLVEQNISLWIQLAPFVDPS-------DPHHTSQCTMSPATFAQASMQLNNSQTSIENLQQIS---NSEFGLQQP-----TFNVDKFTAIF---HKPNIRNSKKHTNNAEITWNEDEN----------------------ISGDSISHTD---------------------------------------------------FMDTVISNEVSAVRSQNVTSIWYNNWKDFTIPAAEDEQDVLKVADHAVQTIRNG-GKVLVSCLSGRGRSGTFSALVIGKLQAVTTHSELVDIIVSMREQRDGMLETPAQFRFVSRLLNLPSTA 427
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig130.8.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A7S3HAE5_9STRA8.470e-2426.17Hypothetical protein (Fragment) n=1 Tax=Spumella e... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig130contigP-wetherbeei_contig130:7371..9360 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog13684.SNOT_12091
PFAMsY_phosphatase
Model size1990
Max annot lvl4751|Fungi
KEGG koko:K01104,ko:K18035
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003824,GO:0004721,GO:0004725,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006464,GO:0006470,GO:0006793,GO:0006796,GO:0006807,GO:0007154,GO:0007165,GO:0007346,GO:0008150,GO:0008152,GO:0009987,GO:0010389,GO:0010564,GO:0010971,GO:0016311,GO:0016787,GO:0016788,GO:0016791,GO:0019538,GO:0023052,GO:0035335,GO:0036211,GO:0042578,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044424,GO:0044464,GO:0045787,GO:0045931,GO:0048518,GO:0048522,GO:0050789,GO:0050794,GO:0050896,GO:0051716,GO:0051726,GO:0065007,GO:0071704,GO:0090068,GO:0140096,GO:1901564,GO:1901987,GO:1901989,GO:1901990,GO:1901992,GO:1902749,GO:1902751
Exons1
Evalue0.00037
EggNOG OGsCOG5599@1|root,KOG0791@2759|Eukaryota,3ADVN@33154|Opisthokonta,3P7MW@4751|Fungi,3RKK5@4890|Ascomycota,209R7@147541|Dothideomycetes,4KJW2@92860|Pleosporales
EC3.1.3.48
DescriptionProtein tyrosine phosphatase, catalytic domain
Cds size1389
COG categoryT
BRITEko00000,ko01000,ko01009
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185969.8796499-UTR-P-wetherbeei_contig130:7370..79591683185969.8796499-UTR-P-wetherbeei_contig130:7370..7959Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig130 7371..7959 +
1683185969.8986945-UTR-P-wetherbeei_contig130:9348..93601683185969.8986945-UTR-P-wetherbeei_contig130:9348..9360Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig130 9349..9360 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185969.889983-CDS-P-wetherbeei_contig130:7959..93481683185969.889983-CDS-P-wetherbeei_contig130:7959..9348Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig130 7960..9348 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig130.8.1prot_P-wetherbeei_contig130.8.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig130 7960..9348 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig130.8.1

>prot_P-wetherbeei_contig130.8.1 ID=prot_P-wetherbeei_contig130.8.1|Name=mRNA_P-wetherbeei_contig130.8.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=463bp
MVVEQNVSLVVQLHPYATVTAETAAVTTAAAAAARSGTPAAARTSGGAGG
GSETGGRGVAAVGAAVNKSGCEDRPEVFCRNLCIDWVGRIFSDEHHPLTT
SFPAVTNLVTCPRRGGSSDGAGSFDVCSAAGGGRGSGAGKIGGVSLSSGD
GGSGSGGGSGGGGGGGGGSSDSSSSDGSDHSGGSDSGGRRGTDATDPPPP
PPLPPYIHYEYDVGVGRHVRHLWYRGWRDFEAPPKADRAALREVVAEVAR
VIAAGESKVLVVCLSGRGRSGTLVAAALGMLGRFRTTGQLVDAIVRLREV
RDSMVETPGHLLFLLQFLGLPMIAGGRQDGEVAAGTAAGVAGAAAAAAGI
AMAAVGLPSPPVQPGRSCGREEDSAGRDGGDDGGGKRRDGCGGERGGYGW
RRALDAVAGGFVGAALVAAVNRFCRYGNHQRDGAGRTITHRNSWGVQGWS
GTKDHNKSNKSL*
back to top

mRNA from alignment at P-wetherbeei_contig130:7371..9360+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig130.8.1 ID=mRNA_P-wetherbeei_contig130.8.1|Name=mRNA_P-wetherbeei_contig130.8.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1990bp|location=Sequence derived from alignment at P-wetherbeei_contig130:7371..9360+ (Phaeothamnion wetherbeei SAG_119_79)
CACTCATCATAATCCCCTCCGTATTTCTTTCATATCATTTCCATAATTTC
TTTCGAGCATAGGAGCTCCTGCTGCTTCCCCCGTGCTGTCTTCTTTACCT
TACTTCTTCTCTCGGCAGCACTGGTACGCCGTCGGCGTCTGTTAGTCATT
GTGTCAGCATCCACTTTGTTCCGCTCCTGAGTCTCTTTATTCCTCAACCG
TCCTCCAACCAATGTAGGCTGGAGCGCCCACCTTCGGTGCGTGCTGCTAC
ACCAACGGCACCTTCAACTCGGGCGGCCTCATCGGCTTCCACGACAAACA
GCGCCCGCGCCAAAAGCCGATCTACAAGCGGCACCGTGTGGTCCTCGGCA
ACTCTTGGCCCTCAAGCTCCGGCGACGACGGCGACGACGGCGGCGGCGAC
GTTGACAGCTCACGAGGCGGCGGCGGCGTCGGCGGCGGCGATGAAAGCGG
TGACGAAAACGACGACGAGAGTTTCGCCGCCTTCATCAACGCCAACGAAG
TCTATCCGGGAATCATCGTGACGCAGTGCCCGCTCCTCGGCACCCCGCAC
GATGCCGGCCCGGTGGAGACGCTCACCGACTGGAAGCGGATGGTGGTCGA
GCAGAATGTTTCTCTGGTGGTGCAGCTCCACCCATATGCCACCGTAACTG
CCGAAACTGCAGCTGTAACCACGGCTGCCGCTGCTGCCGCTCGCTCCGGC
ACCCCCGCTGCCGCCAGAACTTCCGGCGGGGCCGGCGGTGGAAGTGAAAC
GGGCGGCAGGGGCGTTGCGGCGGTAGGAGCGGCCGTTAACAAATCGGGCT
GCGAGGATCGGCCAGAGGTGTTCTGCCGGAATTTGTGCATCGACTGGGTG
GGCCGTATCTTTTCCGATGAGCACCATCCGCTCACAACGTCATTTCCCGC
CGTGACTAACTTGGTTACATGCCCAAGAAGAGGAGGCAGCAGTGACGGCG
CAGGCAGCTTTGATGTCTGCAGCGCCGCCGGTGGTGGTAGAGGGTCAGGC
GCTGGGAAGATTGGTGGCGTTAGCCTTAGCAGCGGGGATGGCGGTAGCGG
CAGCGGTGGAGGCAGTGGCGGCGGTGGAGGCGGCGGCGGCGGCAGCAGCG
ACAGCAGCAGCAGCGATGGCAGTGACCACAGCGGCGGCAGCGACAGCGGT
GGCCGCAGAGGCACCGACGCTACCGACCCGCCGCCGCCGCCACCACTGCC
GCCGTACATTCACTACGAGTATGACGTCGGCGTCGGCCGCCATGTCCGCC
ACCTCTGGTATCGTGGCTGGCGTGACTTTGAGGCACCGCCAAAAGCCGAC
CGCGCAGCGCTGCGCGAAGTCGTCGCTGAGGTCGCCCGCGTCATCGCAGC
CGGCGAATCCAAAGTGCTCGTCGTCTGCCTGAGCGGTCGCGGGCGCAGCG
GCACGCTGGTGGCGGCGGCCCTCGGGATGCTGGGCCGGTTCCGGACGACC
GGGCAGCTCGTGGACGCCATCGTGCGACTGCGCGAGGTGCGGGACTCCAT
GGTGGAGACGCCGGGCCACCTGCTCTTCCTGCTGCAGTTCCTCGGGCTGC
CGATGATTGCGGGCGGCCGACAGGACGGAGAGGTTGCGGCTGGGACGGCG
GCTGGAGTGGCGGGGGCGGCGGCCGCGGCCGCGGGGATTGCGATGGCAGC
GGTGGGGCTGCCATCGCCTCCAGTGCAACCTGGGCGGTCATGTGGCAGGG
AAGAGGACAGCGCGGGTAGGGACGGCGGTGATGATGGCGGAGGCAAGAGA
AGGGATGGATGCGGCGGCGAAAGAGGCGGATACGGATGGCGACGGGCGTT
GGATGCTGTTGCTGGTGGATTCGTTGGTGCTGCCTTGGTGGCGGCAGTCA
ATAGATTTTGTAGATACGGCAACCACCAAAGAGACGGCGCTGGGCGGACC
ATAACCCACCGAAACTCGTGGGGCGTTCAGGGCTGGAGTGGCACCAAAGA
TCACAACAAATCAAACAAATCGCTTTAAAGTTGTCGGCGC
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig130:7371..9360+

>mRNA_P-wetherbeei_contig130.8.1 ID=mRNA_P-wetherbeei_contig130.8.1|Name=mRNA_P-wetherbeei_contig130.8.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1389bp|location=Sequence derived from alignment at P-wetherbeei_contig130:7371..9360+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGTGGTCGAGCAGAATGTTTCTCTGGTGGTGCAGCTCCACCCATATGC
CACCGTAACTGCCGAAACTGCAGCTGTAACCACGGCTGCCGCTGCTGCCG
CTCGCTCCGGCACCCCCGCTGCCGCCAGAACTTCCGGCGGGGCCGGCGGT
GGAAGTGAAACGGGCGGCAGGGGCGTTGCGGCGGTAGGAGCGGCCGTTAA
CAAATCGGGCTGCGAGGATCGGCCAGAGGTGTTCTGCCGGAATTTGTGCA
TCGACTGGGTGGGCCGTATCTTTTCCGATGAGCACCATCCGCTCACAACG
TCATTTCCCGCCGTGACTAACTTGGTTACATGCCCAAGAAGAGGAGGCAG
CAGTGACGGCGCAGGCAGCTTTGATGTCTGCAGCGCCGCCGGTGGTGGTA
GAGGGTCAGGCGCTGGGAAGATTGGTGGCGTTAGCCTTAGCAGCGGGGAT
GGCGGTAGCGGCAGCGGTGGAGGCAGTGGCGGCGGTGGAGGCGGCGGCGG
CGGCAGCAGCGACAGCAGCAGCAGCGATGGCAGTGACCACAGCGGCGGCA
GCGACAGCGGTGGCCGCAGAGGCACCGACGCTACCGACCCGCCGCCGCCG
CCACCACTGCCGCCGTACATTCACTACGAGTATGACGTCGGCGTCGGCCG
CCATGTCCGCCACCTCTGGTATCGTGGCTGGCGTGACTTTGAGGCACCGC
CAAAAGCCGACCGCGCAGCGCTGCGCGAAGTCGTCGCTGAGGTCGCCCGC
GTCATCGCAGCCGGCGAATCCAAAGTGCTCGTCGTCTGCCTGAGCGGTCG
CGGGCGCAGCGGCACGCTGGTGGCGGCGGCCCTCGGGATGCTGGGCCGGT
TCCGGACGACCGGGCAGCTCGTGGACGCCATCGTGCGACTGCGCGAGGTG
CGGGACTCCATGGTGGAGACGCCGGGCCACCTGCTCTTCCTGCTGCAGTT
CCTCGGGCTGCCGATGATTGCGGGCGGCCGACAGGACGGAGAGGTTGCGG
CTGGGACGGCGGCTGGAGTGGCGGGGGCGGCGGCCGCGGCCGCGGGGATT
GCGATGGCAGCGGTGGGGCTGCCATCGCCTCCAGTGCAACCTGGGCGGTC
ATGTGGCAGGGAAGAGGACAGCGCGGGTAGGGACGGCGGTGATGATGGCG
GAGGCAAGAGAAGGGATGGATGCGGCGGCGAAAGAGGCGGATACGGATGG
CGACGGGCGTTGGATGCTGTTGCTGGTGGATTCGTTGGTGCTGCCTTGGT
GGCGGCAGTCAATAGATTTTGTAGATACGGCAACCACCAAAGAGACGGCG
CTGGGCGGACCATAACCCACCGAAACTCGTGGGGCGTTCAGGGCTGGAGT
GGCACCAAAGATCACAACAAATCAAACAAATCGCTTTAA
back to top