mRNA_P-wetherbeei_contig13.4.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig13.4.1
Unique NamemRNA_P-wetherbeei_contig13.4.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig13.4.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig13contigP-wetherbeei_contig13:17727..19886 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size1582
Hectar predicted targeting categoryother localisation
Exons3
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-14_003580.1
Cds size1581
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185969.548146-CDS-P-wetherbeei_contig13:17726..179511683185969.548146-CDS-P-wetherbeei_contig13:17726..17951Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig13 17727..17951 +
1683185969.555907-CDS-P-wetherbeei_contig13:18191..194901683185969.555907-CDS-P-wetherbeei_contig13:18191..19490Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig13 18192..19490 +
1683185969.5631244-CDS-P-wetherbeei_contig13:19829..198861683185969.5631244-CDS-P-wetherbeei_contig13:19829..19886Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig13 19830..19886 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig13.4.1prot_P-wetherbeei_contig13.4.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig13 17727..19886 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig13.4.1

>prot_P-wetherbeei_contig13.4.1 ID=prot_P-wetherbeei_contig13.4.1|Name=mRNA_P-wetherbeei_contig13.4.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=527bp
EKPGQAPAIGAAPPVWDGLPLSGGGPADYEPPRTADLTPDVLSKAKVFED
EIVAALAVDARNGGSAFGGNLDLIEALGICGDGAGSIEIETSWSSAGSVS
PSAASAVSPSAASAVSPSPTPKPASAGPMEASAGGGGDSGGTQPSLLGRQ
QPKSPQRGRQKAGSASAMLPQAELPWEVADPGVSPAISSGSFREGHSPGS
LQFAAADSASGSQCSNKATAEAAREAVARWDSTELPPLTPATADERKPGE
RDGGSLDELSGGERYAADLWMDDSVESAPKSARAPIRSGGGSSIGSRTGG
GPVSESGSGHANANAASDFEEALAAAALARRHRKAPWDDDEDGGGRASGG
DGSSVFSSAGLAAAVKRVTATRTTGEHALAPMSNRGSAGGKGAPSAQPLP
APSIAAAAAAPTATRSAAATPATPAAAAAAAVAADSSYLHFSRPLDVLIR
PGDRPLQVALRDNEALTLVAARGSGVLSITLQEEGGRGRPVDGAIVFDSA
ARFGASAELNHHFPPIRGFAYVFRVRP
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mRNA from alignment at P-wetherbeei_contig13:17727..19886+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig13.4.1 ID=mRNA_P-wetherbeei_contig13.4.1|Name=mRNA_P-wetherbeei_contig13.4.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=2160bp|location=Sequence derived from alignment at P-wetherbeei_contig13:17727..19886+ (Phaeothamnion wetherbeei SAG_119_79)
GAAAAGCCTGGCCAAGCACCGGCCATTGGAGCCGCTCCACCGGTGTGGGA
CGGCCTCCCCCTGAGCGGCGGCGGCCCGGCCGACTACGAGCCGCCGCGAA
CGGCAGACCTGACGCCGGACGTGCTTTCCAAGGCAAAAGTGTTCGAGGAC
GAGATTGTTGCGGCGCTCGCCGTAGACGCCCGAAACGGCGGCAGCGCCTT
TGGCGGGAACTTGGATCTAATCGAGGTGAGTAGCTTTCCCTCCGCATCAA
ATCAGCGTGGTGCTCCCAGGATCGCCGGTTTCTTGAAGTCGTCAGAAGTT
GTCATTGTTACTCTCCCTCCCAGATTTGCGTGCAGTCCATCCCTCTAGAA
CACGGCTGGAAATGTGGGATAGAAAGAGATCAGAGCTTGCCTCTGCGGCA
AGCAATAACTGCTATCCAGTTTTTATGATGCCCTCCTCTTACACCGCCAT
TACTCCTGCGGGCAGGCACTCGGAATTTGCGGAGACGGCGCCGGATCCAT
CGAGATTGAAACATCTTGGTCCTCTGCCGGCAGCGTGTCGCCGTCTGCAG
CATCGGCAGTCTCGCCGTCTGCAGCATCGGCAGTCTCGCCGTCACCAACG
CCGAAACCTGCTTCGGCAGGCCCGATGGAAGCCAGTGCTGGCGGCGGCGG
CGACAGCGGCGGTACACAGCCATCACTGTTGGGCCGGCAGCAACCAAAGT
CACCGCAGCGGGGGCGGCAGAAAGCGGGAAGTGCCAGCGCCATGCTCCCG
CAGGCGGAGCTGCCGTGGGAGGTTGCCGACCCCGGCGTCTCTCCTGCCAT
TTCTTCCGGAAGTTTCCGGGAAGGTCACTCGCCCGGTTCGCTGCAATTTG
CAGCCGCAGACTCGGCATCGGGAAGTCAATGTTCCAATAAAGCCACGGCT
GAAGCGGCGCGGGAAGCCGTCGCTCGGTGGGACAGCACGGAGCTGCCGCC
ACTGACGCCGGCAACGGCGGACGAACGAAAACCCGGGGAAAGAGATGGCG
GATCGCTCGACGAGTTATCTGGGGGGGAGCGATACGCCGCCGACCTATGG
ATGGACGACAGCGTGGAGAGCGCGCCAAAAAGTGCTCGTGCGCCCATCCG
CAGCGGCGGTGGCAGCAGCATCGGCAGCCGCACTGGCGGCGGACCCGTGA
GCGAGAGCGGTAGCGGGCACGCCAACGCAAACGCCGCGTCAGACTTCGAA
GAGGCCCTCGCCGCGGCGGCATTGGCGAGGAGGCACCGCAAGGCCCCTTG
GGACGACGATGAAGATGGTGGCGGCAGGGCCAGCGGCGGCGATGGTAGCA
GCGTCTTTTCTTCGGCCGGGTTGGCGGCGGCGGTTAAAAGGGTGACGGCG
ACGCGGACGACAGGAGAACACGCGCTTGCGCCAATGAGCAACAGAGGCTC
TGCGGGCGGGAAGGGTGCACCGTCCGCCCAGCCGCTACCAGCGCCCTCAA
TCGCGGCAGCCGCTGCAGCACCGACCGCCACGAGGTCAGCTGCGGCGACG
CCGGCGACGCCAGCAGCGGCAGCGGCGGCGGCGGTGGCGGCGGATTCTTC
GTACCTGCACTTCTCCCGTCCGTTGGATGTCCTGATCAGGCCCGGTGACC
GGCCGCTGCAGGTGGCGCTTCGCGACAACGAGGCGCTGACGCTGGTGGCG
GCGCGCGGCTCCGGCGTGCTGTCTATCACGCTGCAGGAGGAGGGCGGCCG
CGGCCGGCCGGTCGACGGCGCCATCGTGTTCGACAGCGCCGCCCGCTTTG
GCGCGTCTGCCGAGGTGGGCTTCACTTGCTTTTCGTCCCGCCGGCTCAAT
TGTTTGGTTGGCTGCTTCGTTTCTGGGGAGCAAAACCATTGCAGTGTAAC
GATCCACAGTTCCTGCCAGCCGCTGGAGCCGAGCTTTGTGCGAAGATTTC
GTTGATTGCCCTCCAACCATTCCGGTGGCCTAGCCGTTGGGCCTCCTGTT
GGTGGGGCCGTGCCGCCGCGTGTACTGTTCTGTTTCCGCACCCATCCAAT
CAACATGTCTATTTCTTCTGTGTCCGGATCAAATCCCTTTCCATTGCCCT
TTCCTTCTGTGCCGTGTTCTCCGGTCTTTTCATCGGTGTTCATCTAAGAG
CAGTTAAACCACCATTTCCCACCGATTCGAGGGTTCGCGTATGTCTTCCG
AGTCCGTCCC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig13:17727..19886+

>mRNA_P-wetherbeei_contig13.4.1 ID=mRNA_P-wetherbeei_contig13.4.1|Name=mRNA_P-wetherbeei_contig13.4.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1581bp|location=Sequence derived from alignment at P-wetherbeei_contig13:17727..19886+ (Phaeothamnion wetherbeei SAG_119_79)
GAAAAGCCTGGCCAAGCACCGGCCATTGGAGCCGCTCCACCGGTGTGGGA
CGGCCTCCCCCTGAGCGGCGGCGGCCCGGCCGACTACGAGCCGCCGCGAA
CGGCAGACCTGACGCCGGACGTGCTTTCCAAGGCAAAAGTGTTCGAGGAC
GAGATTGTTGCGGCGCTCGCCGTAGACGCCCGAAACGGCGGCAGCGCCTT
TGGCGGGAACTTGGATCTAATCGAGGCACTCGGAATTTGCGGAGACGGCG
CCGGATCCATCGAGATTGAAACATCTTGGTCCTCTGCCGGCAGCGTGTCG
CCGTCTGCAGCATCGGCAGTCTCGCCGTCTGCAGCATCGGCAGTCTCGCC
GTCACCAACGCCGAAACCTGCTTCGGCAGGCCCGATGGAAGCCAGTGCTG
GCGGCGGCGGCGACAGCGGCGGTACACAGCCATCACTGTTGGGCCGGCAG
CAACCAAAGTCACCGCAGCGGGGGCGGCAGAAAGCGGGAAGTGCCAGCGC
CATGCTCCCGCAGGCGGAGCTGCCGTGGGAGGTTGCCGACCCCGGCGTCT
CTCCTGCCATTTCTTCCGGAAGTTTCCGGGAAGGTCACTCGCCCGGTTCG
CTGCAATTTGCAGCCGCAGACTCGGCATCGGGAAGTCAATGTTCCAATAA
AGCCACGGCTGAAGCGGCGCGGGAAGCCGTCGCTCGGTGGGACAGCACGG
AGCTGCCGCCACTGACGCCGGCAACGGCGGACGAACGAAAACCCGGGGAA
AGAGATGGCGGATCGCTCGACGAGTTATCTGGGGGGGAGCGATACGCCGC
CGACCTATGGATGGACGACAGCGTGGAGAGCGCGCCAAAAAGTGCTCGTG
CGCCCATCCGCAGCGGCGGTGGCAGCAGCATCGGCAGCCGCACTGGCGGC
GGACCCGTGAGCGAGAGCGGTAGCGGGCACGCCAACGCAAACGCCGCGTC
AGACTTCGAAGAGGCCCTCGCCGCGGCGGCATTGGCGAGGAGGCACCGCA
AGGCCCCTTGGGACGACGATGAAGATGGTGGCGGCAGGGCCAGCGGCGGC
GATGGTAGCAGCGTCTTTTCTTCGGCCGGGTTGGCGGCGGCGGTTAAAAG
GGTGACGGCGACGCGGACGACAGGAGAACACGCGCTTGCGCCAATGAGCA
ACAGAGGCTCTGCGGGCGGGAAGGGTGCACCGTCCGCCCAGCCGCTACCA
GCGCCCTCAATCGCGGCAGCCGCTGCAGCACCGACCGCCACGAGGTCAGC
TGCGGCGACGCCGGCGACGCCAGCAGCGGCAGCGGCGGCGGCGGTGGCGG
CGGATTCTTCGTACCTGCACTTCTCCCGTCCGTTGGATGTCCTGATCAGG
CCCGGTGACCGGCCGCTGCAGGTGGCGCTTCGCGACAACGAGGCGCTGAC
GCTGGTGGCGGCGCGCGGCTCCGGCGTGCTGTCTATCACGCTGCAGGAGG
AGGGCGGCCGCGGCCGGCCGGTCGACGGCGCCATCGTGTTCGACAGCGCC
GCCCGCTTTGGCGCGTCTGCCGAGTTAAACCACCATTTCCCACCGATTCG
AGGGTTCGCGTATGTCTTCCGAGTCCGTCCC
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