mRNA_P-wetherbeei_contig8481.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig8481.2.1
Unique NamemRNA_P-wetherbeei_contig8481.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig8481.2.1 vs. uniprot
Match: A9V644_MONBE (Predicted protein n=1 Tax=Monosiga brevicollis TaxID=81824 RepID=A9V644_MONBE)

HSP 1 Score: 71.6 bits (174), Expect = 5.720e-10
Identity = 44/106 (41.51%), Postives = 59/106 (55.66%), Query Frame = 2 
Query:  398 LVYAVMITGKSPDRELLARRALDDFWRQTHPSKALIVLTEN--------------AFQLPT--NGDPCVLQMVVRPAAGTRLGQLRNYALAAVPAGAVWVQWDDDD 667
            +V+ +MITGK    E L R+++D F  QT+  K LIV+ ++              A QLP       CV+++ V P     LG LRN A+ AVP GAVWVQWDDD+
Sbjct:   84 IVFGLMITGKDLYHEYLGRKSMDCFLNQTYDRKVLIVVNDSPEYSMVDGPSEWLRARQLPEPPRERSCVVELRVPPRQFV-LGDLRNIAINAVPLGAVWVQWDDDE 188
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig8481.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A9V644_MONBE5.720e-1041.51Predicted protein n=1 Tax=Monosiga brevicollis Tax... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig8481contigP-wetherbeei_contig8481:555..2788 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog1403819.BATR01000053_gene1627
PFAMsAnp1,Gly_transf_sug,Glycos_transf_2
Model size1356
Max annot lvl2|Bacteria
KEGG rclassRC00005
KEGG koko:K00694
KEGG TC4.D.3.1.2,4.D.3.1.5,4.D.3.1.6
KEGG ReactionR02889
KEGG Pathwayko00500,ko01100,ko02026,map00500,map01100,map02026
Hectar predicted targeting categorysignal peptide
Exons4
Evalue8.4e-08
EggNOG OGsCOG0463@1|root,COG1215@1|root,COG3774@1|root,COG0463@2|Bacteria,COG1215@2|Bacteria,COG3774@2|Bacteria
EC2.4.1.12
Descriptionpathogenesis
Cds size849
COG categoryM
CAZyGT2
BRITEko00000,ko00001,ko01000,ko01003,ko02000
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig8481.2.1prot_P-wetherbeei_contig8481.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig8481 1173..2571 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187042.8062775-UTR-P-wetherbeei_contig8481:554..6401683187042.8062775-UTR-P-wetherbeei_contig8481:554..640Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig8481 555..640 -
1683187042.8171017-UTR-P-wetherbeei_contig8481:968..11721683187042.8171017-UTR-P-wetherbeei_contig8481:968..1172Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig8481 969..1172 -
1683187042.8562849-UTR-P-wetherbeei_contig8481:2571..27881683187042.8562849-UTR-P-wetherbeei_contig8481:2571..2788Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig8481 2572..2788 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187042.82617-CDS-P-wetherbeei_contig8481:1172..15861683187042.82617-CDS-P-wetherbeei_contig8481:1172..1586Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig8481 1173..1586 -
1683187042.8350263-CDS-P-wetherbeei_contig8481:1880..20761683187042.8350263-CDS-P-wetherbeei_contig8481:1880..2076Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig8481 1881..2076 -
1683187042.8435392-CDS-P-wetherbeei_contig8481:2332..25711683187042.8435392-CDS-P-wetherbeei_contig8481:2332..2571Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig8481 2333..2571 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig8481.2.1

>prot_P-wetherbeei_contig8481.2.1 ID=prot_P-wetherbeei_contig8481.2.1|Name=mRNA_P-wetherbeei_contig8481.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=283bp
MKCGRLVGKSAVAVLVVLMVLLSFQQISRLRFEHLERNLLEVNGIHGGWN
AAHCRNGDAELVYAVMITGKSPDRELLARRALDDFWRQTHPSKALIVLTE
NAFQLPTNGDPCVLQMVVRPAAGTRLGQLRNYALAAVPAGAVWVQWDDDD
GHHEDLMAGQLRCLKENAANGSLLRAQIRWVGRSIKPVSSAPPLSSRFCG
FAPAVSHRFGSGFDCGCLPPRGVPSGNVNGLMFSRKLFRHVCLLPLLSSV
LRRPTVAGRLLLAACWTLPIDNRRSAATGGRF*
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mRNA from alignment at P-wetherbeei_contig8481:555..2788-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig8481.2.1 ID=mRNA_P-wetherbeei_contig8481.2.1|Name=mRNA_P-wetherbeei_contig8481.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=2234bp|location=Sequence derived from alignment at P-wetherbeei_contig8481:555..2788- (Phaeothamnion wetherbeei SAG_119_79)
TGTTGTGTACTCTCCTTCCACCCAGTTACTCGTTTTCCAAATGTATTATA
TCCTTCCCCATTCCCCACTCCTCTGCTCTCGATATTATCGCCCTCGCTGT
TGTCTCCCTCCTTCCACCTCGCTACGCGTTTTCAAGTATAATATCTCCTT
CCCCGTTCCTGTCCTCTCGATCATGTCGCCCTCGCCTCTTGTGACTTAGA
GGTAAGGGGTTGCAGGGATGAAATGTGGTCGCCTCGTTGGGAAGAGCGCG
GTCGCCGTCCTGGTCGTGCTGATGGTTCTTCTCTCGTTTCAACAAATATC
GAGGCTTCGCTTCGAGCACTTGGAACGCAACCTTCTCGAAGTCAATGGCA
TCCATGGCGGATGGAACGCTGCACATTGTCGCAACGGCGACGCAGAGCTC
GTGTATGCCGTGATGATCACTGGAAAGTCGCCTGATCGCGAGCTCCTCGC
TCGAAGGTGAGAGGAAGACTGTATCCTTCTAATACTGAGAGATAACCACA
CACTGTGCGTTAAGGGCGCAGCCTCACTGCCGCAGCAACCCGGTGGCCCC
CTTCTAAATTACGCGTGCTTTTCGCGGTTTCATAGGTCTAGAATCTGCTT
CCTCGTCTCGTCGATTCTCCTCCTAAATTTCTTCTCGTCCCGTCTTTTCC
GGGGCCGGCGGCGACGGTCGGCGCGGGCGAAACGGCGGCTTTCCCTCCTT
CAAACGCCACAGAGCTCTAGACGACTTTTGGCGGCAGACGCACCCTTCAA
AGGCGCTGATCGTCCTGACGGAGAACGCCTTCCAGCTGCCGACCAACGGC
GACCCGTGCGTCCTCCAGATGGTGGTCCGACCAGCGGCCGGGACACGGCT
GGGGCAGCTCCGGAACTACGCGTTGGCCGCGGTGCCCGCTGGAGCCGTCT
GGGTGCAGGTGCGAATCGCAACAAGAAGGGGGCGGGAGACGGCTTTCGGT
AGAGTCCAGATGTTTTGGAGAGGGGAGGGGTAATTCTTAGTTCCCACTTG
TTGGTTGATGATGGAAACAAGCCCGGAGGCTCTCGGTTTGCGTTTCACCT
CTTCGTTGTCGAGCTTTCTGCGCGGGCTGCGGCTCAAAGCACAAAGCGCT
CAACAGCACGACAACCCTGTGAAACTTCTCTTCCCCCTGGCGTCCCACCT
CCATTTCTTTCTGCCTGTTCCCCCCACGCGCCGTTCCCATTCCAATCCAA
AGTGGGACGACGACGATGGCCACCACGAAGATTTGATGGCGGGACAGCTA
CGGTGCTTGAAGGAGAATGCGGCCAACGGCTCGCTGCTCAGGGCGCAAAT
CAGGTGGGTCGGTCGGTCGATCAAGCCAGTGAGTTCCGCACCTCCGCTTT
CCTCTCGCTTTTGCGGTTTTGCTCCAGCCGTCAGTCACCGGTTCGGCAGC
GGTTTCGATTGCGGATGTCTGCCGCCACGGGGCGTGCCATCGGGAAATGT
GAATGGCCTGATGTTCTCGCGGAAACTTTTCCGTCATGTCTGTCTCCTCC
CTTTGCTTTCTTCCGTTTTGCGTCGCCCAACCGTGGCCGGCCGGCTGCTG
TTGGCTGCCTGCTGGACACTGCCAATTGACAACCGGCGGTCGGCGGCGAC
TGGCGGCCGTTTCTGACCGGTGGCGGCCGACGGCAATTCTTTTTGAACGC
CTACGGTGGCGGTTGACGGCGCCGAGCACGAAAACAGGTATTATGTTGCC
AGTAACATTACGTTCGTCGTGAGCACACCAGACGGGATAATGGGCACGGC
CATGATGCGGAAGGCGATCGACCTGCGCTACCCGAACCGGGCGCGCGGTG
AGGACGGGCACATGGCGGAGGTGAGCGGAGCGGGCAGATGCGCAGACGAA
GTTCTTCGATGGCTGCTGCTTGTTCATTTGTACGATGGCTCTTTGGAGTG
GAGCGATGAAAACACAACCGCCATTAATGTGTTGGGGCGTAACCCTGCTA
ATTACGGAGCGTTCTCCTAGCTCTCTTTTGAGCCCTGCGAGTCTTCCCTT
CTGTTCCATCTGTCGGCTGCCGCTCGCATCGCCCTAATACGCCGTGCCGT
GTGTTTTGCCGCTTCTACCCCCTTGCAAATAGACGTCGCCCTCACCTCTT
TTCCCTAACCGCCCAAAACCTACCGTAACCGCCGCCGCCGTTTCGCAGGC
GGTGAAGAGCGGAGCCTACGCGCTGTGGACGAACCCGGCGGAGATGTACG
TGCGCCTCATCCACGGCCACAACACGTGGGGGGC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig8481:555..2788-

>mRNA_P-wetherbeei_contig8481.2.1 ID=mRNA_P-wetherbeei_contig8481.2.1|Name=mRNA_P-wetherbeei_contig8481.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=849bp|location=Sequence derived from alignment at P-wetherbeei_contig8481:555..2788- (Phaeothamnion wetherbeei SAG_119_79)
ATGAAATGTGGTCGCCTCGTTGGGAAGAGCGCGGTCGCCGTCCTGGTCGT
GCTGATGGTTCTTCTCTCGTTTCAACAAATATCGAGGCTTCGCTTCGAGC
ACTTGGAACGCAACCTTCTCGAAGTCAATGGCATCCATGGCGGATGGAAC
GCTGCACATTGTCGCAACGGCGACGCAGAGCTCGTGTATGCCGTGATGAT
CACTGGAAAGTCGCCTGATCGCGAGCTCCTCGCTCGAAGAGCTCTAGACG
ACTTTTGGCGGCAGACGCACCCTTCAAAGGCGCTGATCGTCCTGACGGAG
AACGCCTTCCAGCTGCCGACCAACGGCGACCCGTGCGTCCTCCAGATGGT
GGTCCGACCAGCGGCCGGGACACGGCTGGGGCAGCTCCGGAACTACGCGT
TGGCCGCGGTGCCCGCTGGAGCCGTCTGGGTGCAGTGGGACGACGACGAT
GGCCACCACGAAGATTTGATGGCGGGACAGCTACGGTGCTTGAAGGAGAA
TGCGGCCAACGGCTCGCTGCTCAGGGCGCAAATCAGGTGGGTCGGTCGGT
CGATCAAGCCAGTGAGTTCCGCACCTCCGCTTTCCTCTCGCTTTTGCGGT
TTTGCTCCAGCCGTCAGTCACCGGTTCGGCAGCGGTTTCGATTGCGGATG
TCTGCCGCCACGGGGCGTGCCATCGGGAAATGTGAATGGCCTGATGTTCT
CGCGGAAACTTTTCCGTCATGTCTGTCTCCTCCCTTTGCTTTCTTCCGTT
TTGCGTCGCCCAACCGTGGCCGGCCGGCTGCTGTTGGCTGCCTGCTGGAC
ACTGCCAATTGACAACCGGCGGTCGGCGGCGACTGGCGGCCGTTTCTGA
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