mRNA_P-wetherbeei_contig8478.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig8478.1.1
Unique NamemRNA_P-wetherbeei_contig8478.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig8478.1.1 vs. uniprot
Match: D8LM84_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LM84_ECTSI)

HSP 1 Score: 326 bits (836), Expect = 7.410e-98
Identity = 190/321 (59.19%), Postives = 228/321 (71.03%), Query Frame = 1
Query:   10 AREAVATLLPWLLHKGLLSRCKASQTLSLVTLQRMVKAADGSALRPHLALLVATLVEALSALEPAALQYMQFHAESQLDMTQESMERLRLSLARAGPLQEALDCCYKHIDGAAA-EDLMPRLMALLRSGVGLATRSASAFLVLTLCEKTPRQVRDASNRLLPTLTNAALSERSAALRSTYASAVAAVARLAPPARATHLVRQLCKLFRESDPALDARQRRVAAVLLHDVCLRAGSALAPP----MTAXXXXXXXXXXXXXXXXXWAAALPLAFVARHDPEEAVAAAFSGAWAEGLMQMQLGAVPTGDVA-VRNAKDALGLM 954
            A  AV   LPWLL KG+LSRCK SQ L++ TLQR+VK  D  AL PHLA LVATL+E LSALEP ALQYMQFHAE+QL+MTQ+ MERLRLS++RAGPLQ+ALD CY+H+D A   E LMPRL+ LLRSG GLATRSASA+LVL+LCE+ P ++  A+ RLLPTLTN ALSERS+ LR TY+SA+++VARLAP A  + L  +L +LFRE+DP  D RQRR  A+LL D+C RAG  L  P     T                  W   LP+AFVA  DP++ VA AF+ AW EGL Q+QLGA   G+   VR AKDA+ LM
Sbjct: 1563 AAGAVGVTLPWLLRKGILSRCKPSQALAMRTLQRLVKVCDKEALMPHLAELVATLIEGLSALEPQALQYMQFHAETQLEMTQDQMERLRLSVSRAGPLQDALDNCYRHLDHAGVVEALMPRLLGLLRSGTGLATRSASAYLVLSLCERAPLEIHRAAPRLLPTLTNTALSERSSTLRRTYSSALSSVARLAPAAGVSRLASRLAQLFREADPDFDKRQRRTLALLLGDLCRRAGGQLGAPGGKAATGGVKEEGASGGGGFAASGWNQVLPVAFVASKDPDKPVADAFAEAWQEGLTQLQLGAAGQGEACRVRGAKDAVLLM 1883          
BLAST of mRNA_P-wetherbeei_contig8478.1.1 vs. uniprot
Match: A0A836CAR0_9STRA (Proteasome stabiliser-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CAR0_9STRA)

HSP 1 Score: 261 bits (666), Expect = 4.620e-75
Identity = 159/282 (56.38%), Postives = 190/282 (67.38%), Query Frame = 1
Query:   55 GLLSRCKASQTLSLVTLQRMVKAADGSALRPHLALLVATLVEALSALEPAALQYMQFHAESQLDMTQESMERLRLSLARAGPLQEALDCCYKHIDGAAAEDLMPRLMALLRSGVGLATRSASAFLVLTLCEKTPRQVRDASNRLLPTLTNAALSERSAALRSTYASAVAAVARLAPPARATHLVRQLCKLFRESDPALDARQRRVAAVLLHDVCLRAGSALAPPMTAXXXXXXXXXXXXXXXXXWAAALPLAFVARHDPEEAVAAAFSGAWAEGLMQMQLGA 900
            GL  +C A   LSL TLQR+V  AD  ALRPHLA L+ TLVE LSALEP ALQYMQFHAE QL ++ + MERLRLS AR+GPLQ ALD C +H+D  +A +LMPRLM LLR GVGLATRSA+A +V +LC   PR     +  LL TL+NAALSERSAA+R++Y SA+AAVARLAP      L R+LC+LF  S+  L+  QR  AA LL ++  RA  A+                       WAAALPLA+VARHD + AVAAAF+  W EGL Q+QLGA
Sbjct: 1689 GLSLKCAAVXXLSLKTLQRVVAVADARALRPHLARLICTLVEGLSALEPQALQYMQFHAERQLGISADRMERLRLSAARSGPLQAALDRCCQHLDTPSALELMPRLMGLLRGGVGLATRSAAACVVTSLCADAPRAAAACARPLLQTLSNAALSERSAAVRASYTSALAAVARLAPAPLVAPLARRLCRLFAASNEDLEGGQRAAAAALLRELAARAPEAMG----------GRGSEGEWRRSGWAAALPLAYVARHDADAAVAAAFATVWDEGLTQLQLGA 1960          
BLAST of mRNA_P-wetherbeei_contig8478.1.1 vs. uniprot
Match: A0A7S3XZ13_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XZ13_HETAK)

HSP 1 Score: 206 bits (523), Expect = 1.400e-56
Identity = 131/295 (44.41%), Postives = 188/295 (63.73%), Query Frame = 1
Query:    7 DAREAVATLLPWLLHKGLLSRCKASQTLSLVTLQRMVKAADGSALRPHLALLVATLVEALSALEPAALQYMQFHAESQLDMTQESMERLRLSLARAGPLQEALDCCYKHIDGAAAEDLMPRLMALLRSGVGLATRSASAFLVLTLCEKTPRQVRDASNRLLPTLTNAALSER-SAALRSTYASAVAAVARLAPPARATHLVRQLCKLFRESDP-ALDARQRRVAAVLLHDVCLRAGSALAPPMTAXXXXXXXXXXXXXXXXXWAAALPLAFVARHDPEEAVAAAFSGAWAEGLMQ 885
            ++   +  +LP+LL KG+L +C  SQ +++  LQ+++K A G++L+ +LA  +A L+E + ALEP ALQYMQFHAESQ     ESME+LRL++ARA PLQ++LD C K ID   A +++P+L+ LLR+GVGL TRSASA+LVL LCE++PR+V   S+ LL  L  +AL+ER SA LRS  A A+ +VARLA P     L R+L +L+R SD  ++D+  +     LL  +CLRA S +   M A                 WA+ LP+ ++ +HD +E +A      W EG+ Q
Sbjct:  140 ESEACIKIMLPFLLQKGILDKCAISQGIAMGVLQKIIKVA-GASLKLYLADTIAVLIEGMGALEPQALQYMQFHAESQ-----ESMEQLRLTMARASPLQDSLDHCTKQIDDDVAREVLPKLLNLLRTGVGLPTRSASAYLVLNLCERSPREVGRRSSALLQQLAASALAERRSATLRSALAGAMGSVARLASPFDVGRLARRLVRLYRASDSFSMDSTHKLSVMQLLSSLCLRASSQV---MDA-----------------WASVLPICYIGKHDADEKIAQHSEEIWIEGVSQ 408          
BLAST of mRNA_P-wetherbeei_contig8478.1.1 vs. uniprot
Match: W7TC24_9STRA (Proteasome-associated protein ecm29 n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TC24_9STRA)

HSP 1 Score: 171 bits (434), Expect = 2.360e-44
Identity = 123/297 (41.41%), Postives = 167/297 (56.23%), Query Frame = 1
Query:    1 ATDAREAVATLLPWLLHKGLLSRCKASQTLSLVTLQRMVKAADGSALRPHLALLVATLVEALSALEPAALQYMQFHAESQLDMTQESMERLRLSLARAGPLQEALDCCYKHIDGAAAEDLMPRLMALLRSGVGLATRSASAFLVLTLCEKTPRQVRDASNRLLPTLTNAALSERSAALRSTYASAVAAVARLAPPARATH--LVRQLCKLFRESDPALDARQRRVAAVLLHDVCLRAGSALAPPMTAXXXXXXXXXXXXXXXXXWAAALPLAFVARHDPEEAVAAAFSGAWAEGLMQ 885
            A +  E V  +LP LL +GL S+ K  Q ++++ L R+VK A G+ LRP+L  L++ L+EA SA+EPA LQYMQFHA S +DMT+E+ME+LR  L+R+GPLQEALD C K +DG +   LMP L+  LRSGVGL TR  +A LVL L  +   +++     LL  L   AL+ERS+  +  + SA+A VA+LAP        ++R L +  R +D A    QR    + L  +C  AG  L                       WAA LPLA+V R + EE        AW E  M+
Sbjct:  430 AAEVEEVVRVILPLLLSQGLPSKAKEVQGVAVLVLLRVVKGA-GACLRPYLPELMSALIEAQSAIEPAQLQYMQFHARS-MDMTEEAMEQLRYGLSRSGPLQEALDICMKELDGPSLSRLMPSLLLQLRSGVGLNTRCCAANLVLVLSTRFRPELKVHLPALLRVLAAGALAERSSTAQRFFLSALAGVAKLAPGGEEVRRAILRLLREYRRVADLATHRSQRLPVVLALRQLCTAAGEGLEEAA-------------------WAAVLPLAYVGRFEEEEGGEGEVRKAWQEIWME 705          
BLAST of mRNA_P-wetherbeei_contig8478.1.1 vs. uniprot
Match: A0A4D9CRQ8_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CRQ8_9STRA)

HSP 1 Score: 171 bits (434), Expect = 4.370e-44
Identity = 123/297 (41.41%), Postives = 167/297 (56.23%), Query Frame = 1
Query:    1 ATDAREAVATLLPWLLHKGLLSRCKASQTLSLVTLQRMVKAADGSALRPHLALLVATLVEALSALEPAALQYMQFHAESQLDMTQESMERLRLSLARAGPLQEALDCCYKHIDGAAAEDLMPRLMALLRSGVGLATRSASAFLVLTLCEKTPRQVRDASNRLLPTLTNAALSERSAALRSTYASAVAAVARLAPPARATH--LVRQLCKLFRESDPALDARQRRVAAVLLHDVCLRAGSALAPPMTAXXXXXXXXXXXXXXXXXWAAALPLAFVARHDPEEAVAAAFSGAWAEGLMQ 885
            A +  E V  +LP LL +GL S+ K  Q ++++ L R+VK A G+ LRP+L  L++ L+EA SA+EPA LQYMQFHA S +DMT+E+ME+LR  L+R+GPLQEALD C K +DG +   LMP L+  LRSGVGL TR  +A LVL L  +   +++     LL  L   AL+ERS+  +  + SA+A VA+LAP        ++R L +  R +D A    QR    + L  +C  AG  L                       WAA LPLA+V R + EE        AW E  M+
Sbjct: 1441 AAEVEEVVRVILPLLLSQGLPSKAKEVQGVAVLVLLRVVKGA-GACLRPYLPELMSALIEAQSAIEPAQLQYMQFHARS-MDMTEEAMEQLRYGLSRSGPLQEALDICMKELDGPSLSRLMPSLLLQLRSGVGLNTRCCAANLVLVLSTRFRPELKVHLPALLRVLAAGALTERSSTAQRFFLSALAGVAKLAPGGEEVRRAILRLLREYRRVADLATHRSQRLPVVLALRQLCTAAGEGLEEAA-------------------WAAVLPLAYVGRFEEEEGGEGEVRKAWEEIWME 1716          
BLAST of mRNA_P-wetherbeei_contig8478.1.1 vs. uniprot
Match: A0A8J9WP94_9CHLO (Probable proteasome adapter and scaffold protein ECM29 n=1 Tax=Coccomyxa sp. Obi TaxID=2315456 RepID=A0A8J9WP94_9CHLO)

HSP 1 Score: 147 bits (372), Expect = 7.360e-36
Identity = 110/290 (37.93%), Postives = 159/290 (54.83%), Query Frame = 1
Query:    7 DAREAVATLLPWLLHKGLLSRCKASQTLSLVTLQRMVKAADGSALRPHLALLVATLVEALSALEPAALQYMQFHAESQLDMTQESMERLRLSLARAGPLQEALDCCYKHIDGAAAEDLMPRLMALLRSGVGLATRSASAFLVLTLCEKTPRQVRDASNRLLPTLTNAALSERSAALRSTYASAVAAVARLAPPARATHLVRQLCKLFRESDPALDARQRRVAAVLLHDVCLRAGSALAPPMTAXXXXXXXXXXXXXXXXXWAAALPLAFVARHDPEEAVAAAFSGAWAEG 876
            DA  AVA +LP+LL  G+ S  K  Q LSL+T+ +MV+ A    +RP LA LV  L+E+LS +E A L Y++ HAE ++ +    +E +R++ +++ P+ + LD   ++ D A+ + L+P L  LL+ GVG+ TR  SA  V +L  +    +R  +  LL  L  AA SERS A+R +YA A AAV + AP ARA  +V +   L+  S+P  D   R++A VLL ++   A    A                       AA LPLAFVAR D +  VAA +   W EG
Sbjct: 1310 DAAAAVALMLPFLLQTGVGSSVKEVQALSLMTVAKMVQKAGPEHIRPQLARLVPALLESLSGMEDARLNYVEQHAE-RIGLDSGRLENMRVAASKSSPMADTLDLAARYTDIASLDALVPALCQLLKRGVGVNTRVGSARFVASLAARMGSDIRPHTGTLLKALVGAARSERSTAVRRSYAQAAAAVIKYAPEARAAKVVAEAAALY--SEPG-DREARQLAGVLLRELVRGAADTFAAHA--------------------AAVLPLAFVARADEDADVAALWKEVWEEG 1575          
BLAST of mRNA_P-wetherbeei_contig8478.1.1 vs. uniprot
Match: A0A1Y1HMQ4_KLENI (ARM repeat superfamily protein n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1HMQ4_KLENI)

HSP 1 Score: 140 bits (352), Expect = 3.260e-33
Identity = 103/290 (35.52%), Postives = 150/290 (51.72%), Query Frame = 1
Query:    7 DAREAVATLLPWLLHKGLLSRCKASQTLSLVTLQRMVKAADGSALRPHLALLVATLVEALSALEPAALQYMQFHAESQLDMTQESMERLRLSLARAGPLQEALDCCYKHIDGAAAEDLMPRLMALLRSGVGLATRSASAFLVLTLCEKT-PRQVRDASNRLLPTLTNAALSERSAALRSTYASAVAAVARLAPPARATHLVRQLCKLFRESDPALDARQRRVAAVLLHDVCLRAGSALAPPMTAXXXXXXXXXXXXXXXXXWAAALPLAFVARHDPEEAVAAAFSGAWAE 873
            DA+ AVA +LP+LL  G+ S     + LSL T+ ++VK A  + +RPH+  LV  ++E LS+LE + L Y+Q HAE       E +E  R++ AR  P+   L+ C + +D    E L P+L+ L+RSGVGL TR+  A  +  L  +T P  VR  +  LL  L +   +E+SAA+R   A+A A VA+ A PAR +  V   C+L+   D   D   R  + +LL ++  +A   L    T                      LPLAFV ++D E+ V A F   W E
Sbjct: 1252 DAKAAVAIVLPFLLTTGVPSSVTEVRRLSLATVTKLVKQATPAVVRPHVPDLVFHMLEGLSSLEDSRLNYVQLHAERMNGRAAEQLESARVAAARDSPMWATLELCLRQVDAETMEALSPKLVQLIRSGVGLTTRAGVARFITMLTTRTSPEIVRPHAAALLKALFSVVRTEKSAAVRKACAAAAAGVAKPAAPARFSKFVTDTCQLY---DAPGDVESRTASGLLLRELSRQANEQLKGMYTE--------------------VLPLAFVGKYDDEKEVRALFGEVWEE 1518          
BLAST of mRNA_P-wetherbeei_contig8478.1.1 vs. uniprot
Match: A4RTV6_OSTLU (Uncharacterized protein n=2 Tax=Ostreococcus sp. 'lucimarinus' TaxID=242159 RepID=A4RTV6_OSTLU)

HSP 1 Score: 137 bits (344), Expect = 3.720e-32
Identity = 96/290 (33.10%), Postives = 156/290 (53.79%), Query Frame = 1
Query:    4 TDAREAVATLLPWLLHKGLLSRCKASQTLSLVTLQRMVKAADGSALRPHLALLVATLVEALSALEPAALQYMQFHAESQLDMTQESMERLRLSLARAGPLQEALDCCYKHIDGAAAEDLMPRLMALLRSGVGLATRSASAFLVLTLCEKTPRQVRDASNRLLPTLTNAALSERSAALRSTYASAVAAVARLAPPARATHLVRQLCKLFRESDPALDARQRRVAAVLLHDVCLRAGSALAPPMTAXXXXXXXXXXXXXXXXXWAAALPLAFVARHDPEEAVAAAFSGAWAE 873
            ++ +  +  +LP +L +GLLS  K  Q LS+  + ++VK ADG A+RPH+A +V TL+E+LS +E + L Y++ HA S      + +E +RL  A++ P+ E LD    HID    ++L+  + ++LR+GVGL TR+ +   +  LC +  R VR  +  L   L  +A+++ SAA+R+++ SA+AA+AR A       L +++ +LF+         +R VAA L  ++   A  AL+P  T                      LPLAFV  +D  +A    +S  W E
Sbjct: 1242 SEVKGTIGIVLPIMLERGLLSTVKEVQALSMDVIMKLVKFADGDAIRPHIAEIVKTLLESLSGMEDSRLNYIEQHAASFGQGASDKLEAMRLRAAKSSPMGETLDLLMAHIDEDVMKELVSTMNSVLRTGVGLNTRAGAGRFLQRLCMRRGRLVRPHAATLFKMLLASAVNDASAAVRTSFISAIAAIARYAEEPGVNALAQEIARLFKSDTET----ERAVAAQLALELSRNAPDALSPQKTL--------------------VLPLAFVGSYDSIDAGKKKWSEVWEE 1507          
BLAST of mRNA_P-wetherbeei_contig8478.1.1 vs. uniprot
Match: Q01D85_OSTTA (Armadillo-type fold n=2 Tax=Ostreococcus tauri TaxID=70448 RepID=Q01D85_OSTTA)

HSP 1 Score: 134 bits (336), Expect = 4.280e-31
Identity = 93/289 (32.18%), Postives = 157/289 (54.33%), Query Frame = 1
Query:    7 DAREAVATLLPWLLHKGLLSRCKASQTLSLVTLQRMVKAADGSALRPHLALLVATLVEALSALEPAALQYMQFHAESQLDMTQESMERLRLSLARAGPLQEALDCCYKHIDGAAAEDLMPRLMALLRSGVGLATRSASAFLVLTLCEKTPRQVRDASNRLLPTLTNAALSERSAALRSTYASAVAAVARLAPPARATHLVRQLCKLFRESDPALDARQRRVAAVLLHDVCLRAGSALAPPMTAXXXXXXXXXXXXXXXXXWAAALPLAFVARHDPEEAVAAAFSGAWAE 873
            + +  +  +LP LL +GLLS  K  Q LS+  + ++VK ADG A++ H+  +V TL+++LS++E + L Y++ HA S      E +E +RL  A++ P+ E LD    HID     +L+  L+++LRS +GL TR+ +   +  LC +  R +R  +  L  TL ++A+S+ SA++R+++ +A+AA+A+ A   +   L  ++ +LF+         +R VAA L  ++   A  ALAP  T                      LPL+FV + D EEA  + ++  W E
Sbjct: 1348 EVKGTIQIVLPILLKRGLLSTVKEVQALSMDVIMKLVKFADGGAIKSHIPEIVKTLLDSLSSMEDSRLNYIEQHAASFGQGASERLEHIRLRAAKSSPMGETLDLLMTHIDEEIMSELVLTLISVLRSSIGLNTRAGAGRFLQRLCMRRGRLIRPHATTLFRTLLSSAVSDTSASVRNSFITAIAAIAKYAEEPQVNALAEEIARLFKSETET----ERAVAANLALELSRSAPDALAPQKTLI--------------------LPLSFVGQFDTEEAGKSKWTEVWNE 1612          
BLAST of mRNA_P-wetherbeei_contig8478.1.1 vs. uniprot
Match: A0A2K1L9Z8_PHYPA (Uncharacterized protein n=2 Tax=Physcomitrium patens TaxID=3218 RepID=A0A2K1L9Z8_PHYPA)

HSP 1 Score: 133 bits (334), Expect = 7.810e-31
Identity = 94/287 (32.75%), Postives = 158/287 (55.05%), Query Frame = 1
Query:    7 DAREAVATLLPWLLHKGLLSRCKASQTLSLVTLQRMVKAADGSALRPHLALLVATLVEALSALEPAALQYMQFHAESQLDMTQESMERLRLSLARAGPLQEALDCCYKHIDGAAAEDLMPRLMALLRSGVGLATRSASAFLVLTLCEKTPRQVRDASNRLLPTLTNAALSERSAALRSTYASAVAAVARLAPPARATHLVRQLCKLFRESDPALDARQRRVAAVLLHDVCLRAGSALAPPMTAXXXXXXXXXXXXXXXXXWAAALPLAFVARHDPEEAVAAAFSGAW 867
            DAR+ +A +LP+LL KG++S     + LS+ T+ ++VK A G+A+RP +  LV+ ++E+LS+LE   L Y + HAE ++ ++QE +E +R+++A+  P+ + LD C +H+D +  E L+PRL+ L++SGVGL TR      +  L + +   ++  S  LL  L +A  SE+SAA R  +A+A+ +VA+     +   L+     L+   +   D  QR V+A++L ++  +A        T                      LP+ FVAR D E+ + A F   W
Sbjct: 1254 DARDTMAIVLPFLLTKGIMSTVSDVRRLSINTVMKLVKGA-GAAIRPQMPDLVSCMIESLSSLEDQRLNYAELHAE-RVGISQEKLESVRIAVAKDSPMWDTLDLCIRHVDNSTLESLIPRLVQLIQSGVGLNTRVGVGKFISMLAQHSGPDMKPHSVVLLRALFSAVKSEKSAASRKAFAAALGSVAKYTSETQVRKLLLDAVALYNSEN---DRDQRMVSALVLKELSRQADDVFKGNYTLI--------------------LPMTFVARFDDEKDIVALFEEIW 1515          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig8478.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LM84_ECTSI7.410e-9859.19Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A836CAR0_9STRA4.620e-7556.38Proteasome stabiliser-domain-containing protein n=... [more]
A0A7S3XZ13_HETAK1.400e-5644.41Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
W7TC24_9STRA2.360e-4441.41Proteasome-associated protein ecm29 n=1 Tax=Nannoc... [more]
A0A4D9CRQ8_9STRA4.370e-4441.41Uncharacterized protein n=1 Tax=Nannochloropsis sa... [more]
A0A8J9WP94_9CHLO7.360e-3637.93Probable proteasome adapter and scaffold protein E... [more]
A0A1Y1HMQ4_KLENI3.260e-3335.52ARM repeat superfamily protein n=1 Tax=Klebsormidi... [more]
A4RTV6_OSTLU3.720e-3233.10Uncharacterized protein n=2 Tax=Ostreococcus sp. '... [more]
Q01D85_OSTTA4.280e-3132.18Armadillo-type fold n=2 Tax=Ostreococcus tauri Tax... [more]
A0A2K1L9Z8_PHYPA7.810e-3132.75Uncharacterized protein n=2 Tax=Physcomitrium pate... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig8478contigP-wetherbeei_contig8478:1340..2555 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D8LM84
PFAMsEcm29
Model size957
Max annot lvl2759|Eukaryota
KEGG koko:K11886
Hectar predicted targeting categoryother localisation
Exons2
Evalue1.21e-98
EggNOG OGsKOG0915@1|root,KOG0915@2759|Eukaryota
Descriptionproteasome assembly
Cds size957
COG categoryDTZ
BRITEko00000,ko03051
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187042.5623016-CDS-P-wetherbeei_contig8478:1339..20061683187042.5623016-CDS-P-wetherbeei_contig8478:1339..2006Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig8478 1340..2006 -
1683187042.5719206-CDS-P-wetherbeei_contig8478:2265..25551683187042.5719206-CDS-P-wetherbeei_contig8478:2265..2555Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig8478 2266..2555 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig8478.1.1prot_P-wetherbeei_contig8478.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig8478 1340..2555 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig8478.1.1

>prot_P-wetherbeei_contig8478.1.1 ID=prot_P-wetherbeei_contig8478.1.1|Name=mRNA_P-wetherbeei_contig8478.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=319bp
ATDAREAVATLLPWLLHKGLLSRCKASQTLSLVTLQRMVKAADGSALRPH
LALLVATLVEALSALEPAALQYMQFHAESQLDMTQESMERLRLSLARAGP
LQEALDCCYKHIDGAAAEDLMPRLMALLRSGVGLATRSASAFLVLTLCEK
TPRQVRDASNRLLPTLTNAALSERSAALRSTYASAVAAVARLAPPARATH
LVRQLCKLFRESDPALDARQRRVAAVLLHDVCLRAGSALAPPMTAATAAA
TAAAWGGSSGGGWAAALPLAFVARHDPEEAVAAAFSGAWAEGLMQMQLGA
VPTGDVAVRNAKDALGLML
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mRNA from alignment at P-wetherbeei_contig8478:1340..2555-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig8478.1.1 ID=mRNA_P-wetherbeei_contig8478.1.1|Name=mRNA_P-wetherbeei_contig8478.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1216bp|location=Sequence derived from alignment at P-wetherbeei_contig8478:1340..2555- (Phaeothamnion wetherbeei SAG_119_79)
GCCACCGACGCGCGCGAGGCCGTCGCGACGCTGCTGCCGTGGCTGTTGCA CAAGGGGCTGCTGAGCCGCTGCAAGGCGTCGCAGACGCTGTCGCTCGTGA CGCTGCAGCGGATGGTCAAAGCGGCGGACGGCTCCGCGCTGCGGCCGCAT CTAGCGCTGCTGGTGGCGACGCTTGTGGAGGCGCTGAGCGCGCTGGAGCC AGCGGCGCTGCAGTACATGCAGTTCCACGCTGAGAGCCAACTGGACATGA CACAGGAGAGCATGGAGCGCCTGCGGCTGTCCCTTGCCAGGTCATTCCGT GCTCGGGCGACTGAAATCTGTGTTTGGAGTCCAGGCGGTTGGATTTGCTT GAAATAGCTTTACCGGTGCCACAATTTGCACGGCTGTTCCTTCTCCAAGA CCGAGCCTTTCGTAGTGGCAGGATGTCCCTTGCGCAACCCTTTTCTTTCC ACTGCTGGTTTTAATGTTTCCTCGCGCTTCTTTAACTTCGGCTTTCTGTC TTCTGGTCCTTCTCGTCCGCCTGTCTTCCCCTACTCGCCTGGTCGGCAGG GCGGGCCCGCTGCAGGAGGCGCTGGACTGCTGCTACAAACATATTGACGG CGCCGCCGCCGAGGACCTCATGCCGCGGCTCATGGCCCTGCTGCGCTCCG GCGTCGGCCTCGCCACCCGCTCCGCCTCGGCATTTCTGGTCCTGACACTC TGCGAGAAGACCCCGCGGCAGGTGCGCGACGCCAGCAACCGCCTGCTGCC GACGCTCACAAATGCCGCACTGTCGGAGCGGAGCGCGGCGCTGCGGTCGA CATACGCGTCAGCGGTGGCCGCCGTGGCAAGGCTGGCGCCGCCGGCGCGG GCAACTCACCTGGTGCGTCAGCTCTGCAAGCTCTTCCGCGAATCAGACCC GGCATTGGACGCTCGGCAGCGCCGCGTCGCCGCCGTGCTGCTGCATGACG TTTGCCTGCGGGCTGGGAGCGCGCTGGCGCCGCCGATGACGGCGGCGACG GCGGCTGCGACGGCGGCTGCATGGGGCGGCAGCAGCGGCGGTGGCTGGGC GGCAGCACTGCCGTTGGCGTTTGTGGCGCGGCACGACCCGGAGGAGGCGG TGGCGGCGGCGTTCAGCGGGGCGTGGGCGGAGGGGCTGATGCAGATGCAG CTGGGGGCAGTGCCCACGGGGGATGTGGCGGTCCGGAACGCAAAGGACGC ACTCGGCCTCATGCTT
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Coding sequence (CDS) from alignment at P-wetherbeei_contig8478:1340..2555-

>mRNA_P-wetherbeei_contig8478.1.1 ID=mRNA_P-wetherbeei_contig8478.1.1|Name=mRNA_P-wetherbeei_contig8478.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=957bp|location=Sequence derived from alignment at P-wetherbeei_contig8478:1340..2555- (Phaeothamnion wetherbeei SAG_119_79)
GCCACCGACGCGCGCGAGGCCGTCGCGACGCTGCTGCCGTGGCTGTTGCA
CAAGGGGCTGCTGAGCCGCTGCAAGGCGTCGCAGACGCTGTCGCTCGTGA
CGCTGCAGCGGATGGTCAAAGCGGCGGACGGCTCCGCGCTGCGGCCGCAT
CTAGCGCTGCTGGTGGCGACGCTTGTGGAGGCGCTGAGCGCGCTGGAGCC
AGCGGCGCTGCAGTACATGCAGTTCCACGCTGAGAGCCAACTGGACATGA
CACAGGAGAGCATGGAGCGCCTGCGGCTGTCCCTTGCCAGGGCGGGCCCG
CTGCAGGAGGCGCTGGACTGCTGCTACAAACATATTGACGGCGCCGCCGC
CGAGGACCTCATGCCGCGGCTCATGGCCCTGCTGCGCTCCGGCGTCGGCC
TCGCCACCCGCTCCGCCTCGGCATTTCTGGTCCTGACACTCTGCGAGAAG
ACCCCGCGGCAGGTGCGCGACGCCAGCAACCGCCTGCTGCCGACGCTCAC
AAATGCCGCACTGTCGGAGCGGAGCGCGGCGCTGCGGTCGACATACGCGT
CAGCGGTGGCCGCCGTGGCAAGGCTGGCGCCGCCGGCGCGGGCAACTCAC
CTGGTGCGTCAGCTCTGCAAGCTCTTCCGCGAATCAGACCCGGCATTGGA
CGCTCGGCAGCGCCGCGTCGCCGCCGTGCTGCTGCATGACGTTTGCCTGC
GGGCTGGGAGCGCGCTGGCGCCGCCGATGACGGCGGCGACGGCGGCTGCG
ACGGCGGCTGCATGGGGCGGCAGCAGCGGCGGTGGCTGGGCGGCAGCACT
GCCGTTGGCGTTTGTGGCGCGGCACGACCCGGAGGAGGCGGTGGCGGCGG
CGTTCAGCGGGGCGTGGGCGGAGGGGCTGATGCAGATGCAGCTGGGGGCA
GTGCCCACGGGGGATGTGGCGGTCCGGAACGCAAAGGACGCACTCGGCCT
CATGCTT
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