mRNA_P-wetherbeei_contig8448.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79
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Overview
Homology
BLAST of mRNA_P-wetherbeei_contig8448.1.1 vs. uniprot
Match: A0A1H8P480_9PROT (DNA-binding transcriptional regulator, Lrp family n=2 Tax=unclassified Rhodospirillales TaxID=941843 RepID=A0A1H8P480_9PROT) HSP 1 Score: 268 bits (684), Expect = 5.160e-90 Identity = 138/152 (90.79%), Postives = 146/152 (96.05%), Query Frame = 1
Query: 10 MISLDSIDRRILGHLQKDGRVSNADLAERVGLSSSPCWRRVKALEEAGVIKGYTAQVDARAVGLSVNVFVSVSLSTQVEKSLQAFERAAANRPEVMECYLMTGDSDYLLRVVVPDLDAYERFVMDFTKIPGIAQIRSSFALRPVKQGAALPL 465
MISLD+IDRRIL HLQK+GRVSNADLA +VGLSSSPCWRRVKALEEAGVIKGY AQVDA+AVGLSVNVF+SVSLSTQVEK+LQAFERAAA RPEVMECYLMTGDSDYLLR+VVPDL+AYERFVMDFTKI GIAQIRSSFALR VKQGAALPL
Sbjct: 1 MISLDAIDRRILDHLQKNGRVSNADLAGQVGLSSSPCWRRVKALEEAGVIKGYAAQVDAKAVGLSVNVFMSVSLSTQVEKALQAFERAAAARPEVMECYLMTGDSDYLLRIVVPDLEAYERFVMDFTKIAGIAQIRSSFALRTVKQGAALPL 152
BLAST of mRNA_P-wetherbeei_contig8448.1.1 vs. uniprot
Match: A0A1T4THR3_9HYPH (Transcriptional regulator, AsnC family n=11 Tax=Alphaproteobacteria TaxID=28211 RepID=A0A1T4THR3_9HYPH) HSP 1 Score: 258 bits (659), Expect = 2.720e-86 Identity = 132/152 (86.84%), Postives = 142/152 (93.42%), Query Frame = 1
Query: 10 MISLDSIDRRILGHLQKDGRVSNADLAERVGLSSSPCWRRVKALEEAGVIKGYTAQVDARAVGLSVNVFVSVSLSTQVEKSLQAFERAAANRPEVMECYLMTGDSDYLLRVVVPDLDAYERFVMDFTKIPGIAQIRSSFALRPVKQGAALPL 465
MISLD+IDRRIL LQ+DGR+SN +LAE+VGLSSSPCWRRVKALEEAGVIKGY A VDA+ VGLSVNVF+SVSLSTQ EKSL+ FERAAA RPEVMECYLMTGDSDYLLR+VVPDL+AYERFVMDFTKIPGIAQIRSSFALRPVKQG ALPL
Sbjct: 1 MISLDAIDRRILEKLQQDGRLSNTELAEKVGLSSSPCWRRVKALEEAGVIKGYAALVDAKTVGLSVNVFMSVSLSTQNEKSLKDFERAAAARPEVMECYLMTGDSDYLLRIVVPDLEAYERFVMDFTKIPGIAQIRSSFALRPVKQGTALPL 152
BLAST of mRNA_P-wetherbeei_contig8448.1.1 vs. uniprot
Match: A0A537MXH6_9PROT (Lrp/AsnC family transcriptional regulator (Fragment) n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A537MXH6_9PROT) HSP 1 Score: 248 bits (634), Expect = 1.440e-82 Identity = 129/150 (86.00%), Postives = 140/150 (93.33%), Query Frame = 1
Query: 10 MISLDSIDRRILGHLQKDGRVSNADLAERVGLSSSPCWRRVKALEEAGVIKGYTAQVDARAVGLSVNVFVSVSLSTQVEKSLQAFERAAANRPEVMECYLMTGDSDYLLRVVVPDLDAYERFVMDFTKIPGIAQIRSSFALRPVKQGAAL 459
MI+LD+IDRRIL LQ+DGR+SNADLA++VGLSSSPCWRRVKALEEAGVIKG +DA+ VGLSVNVF+SVSLSTQ EKSLQAFERAAA RPEVMECYLMTGDSDYLLR+VVPDL+AYERFVMDFTKIPGIAQIRSSFALRPVKQG AL
Sbjct: 1 MITLDAIDRRILERLQQDGRLSNADLADKVGLSSSPCWRRVKALEEAGVIKGL---LDAKTVGLSVNVFMSVSLSTQNEKSLQAFERAAAARPEVMECYLMTGDSDYLLRIVVPDLEAYERFVMDFTKIPGIAQIRSSFALRPVKQGTAL 147
BLAST of mRNA_P-wetherbeei_contig8448.1.1 vs. uniprot
Match: A0A5C8PE89_9HYPH (Lrp/AsnC family transcriptional regulator n=2 Tax=Hyphomicrobiales TaxID=356 RepID=A0A5C8PE89_9HYPH) HSP 1 Score: 237 bits (604), Expect = 8.270e-78 Identity = 116/150 (77.33%), Postives = 134/150 (89.33%), Query Frame = 1
Query: 16 SLDSIDRRILGHLQKDGRVSNADLAERVGLSSSPCWRRVKALEEAGVIKGYTAQVDARAVGLSVNVFVSVSLSTQVEKSLQAFERAAANRPEVMECYLMTGDSDYLLRVVVPDLDAYERFVMDFTKIPGIAQIRSSFALRPVKQGAALPL 465
+LD IDR IL LQ+DGR+SNADLAE+VGLS+SPCWRRVKALEE G+I+GY A VDA+AVGL V+VF+SVSL+TQV+ +LQ FE+A RPEVMECYLMTGDSDYLLRVVVPDL+AYERFVMDFT+I G+ QIRSSFALRPVKQG ALP+
Sbjct: 7 ALDGIDRHILESLQRDGRLSNADLAEKVGLSASPCWRRVKALEETGIIRGYVAVVDAKAVGLPVSVFMSVSLTTQVQSALQRFEKAVQQRPEVMECYLMTGDSDYLLRVVVPDLEAYERFVMDFTRIAGVGQIRSSFALRPVKQGTALPM 156
BLAST of mRNA_P-wetherbeei_contig8448.1.1 vs. uniprot
Match: A0A2E6Q601_9PROT (ArsR family transcriptional regulator n=1 Tax=Rhodospirillaceae bacterium TaxID=1898112 RepID=A0A2E6Q601_9PROT) HSP 1 Score: 192 bits (489), Expect = 2.560e-60 Identity = 95/154 (61.69%), Postives = 121/154 (78.57%), Query Frame = 1
Query: 13 ISLDSIDRRILGHLQKDGRVSNADLAERVGLSSSPCWRRVKALEEAGVIKGYTAQVDARAVGLSVNVFVSVSLSTQVEKSLQAFERAAANRPEVMECYLMTGDSDYLLRVVVPDLDAYERFVMD-FTKIPGIAQIRSSFALRPVKQGAALPLDR 471
I++D++D+RIL +Q++ R+SN DLAERVG+S SPCWRRVK LEEAG+I+ + VD AVGL V+VF+ V+L Q+E +L+ FER RPEVMECYLMTGD+DYLLRVVV DL AYERF+MD T+I G+A I SSFAL+ VK ALP+D+
Sbjct: 4 IAMDAVDQRILAVMQENARISNVDLAERVGISPSPCWRRVKTLEEAGIIQRHVTLVDPAAVGLPVSVFIQVTLERQIETALETFERTVLERPEVMECYLMTGDADYLLRVVVADLAAYERFLMDHLTRINGVASINSSFALKQVKYRTALPVDQ 157
BLAST of mRNA_P-wetherbeei_contig8448.1.1 vs. uniprot
Match: A0A3S0R9F3_9PROT (Lrp/AsnC family transcriptional regulator n=2 Tax=Azospirillum TaxID=191 RepID=A0A3S0R9F3_9PROT) HSP 1 Score: 192 bits (489), Expect = 2.650e-60 Identity = 103/152 (67.76%), Postives = 118/152 (77.63%), Query Frame = 1
Query: 13 ISLDSIDRRILGHLQKDGRVSNADLAERVGLSSSPCWRRVKALEEAGVIKGYTAQVDARAVGLSVNVFVSVSLSTQVEKSLQAFERAAANRPEVMECYLMTGDSDYLLRVVVPDLDAYERFVMD-FTKIPGIAQIRSSFALRPVKQGAALPL 465
I LD IDR+IL LQ+DGR N +LAERVGLS SPC RRVKALEEAGVI Y A VD V L+VN+FVSVSL QVE+ L AFE A RPEV+ECYLM+GD+DYLLRVVVPDL +YERF+ D T+IPG+A IRSSFAL+ V+ ALPL
Sbjct: 4 IKLDRIDRKILAQLQEDGRQPNNELAERVGLSPSPCLRRVKALEEAGVISRYVALVDPVTVDLAVNIFVSVSLDRQVEERLDAFEAAVMERPEVLECYLMSGDADYLLRVVVPDLASYERFLKDHLTRIPGLAGIRSSFALKQVRYRTALPL 155
BLAST of mRNA_P-wetherbeei_contig8448.1.1 vs. uniprot
Match: A0A2E6QHV8_9PROT (ArsR family transcriptional regulator n=1 Tax=Rhodospirillaceae bacterium TaxID=1898112 RepID=A0A2E6QHV8_9PROT) HSP 1 Score: 192 bits (488), Expect = 4.560e-60 Identity = 95/150 (63.33%), Postives = 121/150 (80.67%), Query Frame = 1
Query: 19 LDSIDRRILGHLQKDGRVSNADLAERVGLSSSPCWRRVKALEEAGVIKGYTAQVDARAVGLSVNVFVSVSLSTQVEKSLQAFERAAANRPEVMECYLMTGDSDYLLRVVVPDLDAYERFVMD-FTKIPGIAQIRSSFALRPVKQGAALPL 465
LD+IDRRIL LQ+D R+SN DLA+ G+S SPC RRV+ALEE GVI+GY +D AVGL V++FVSVSL Q+E++L+ FE A ++ PEV+ECYLMTGD+DYLLRVVVPDL AYERF+MD T++PG++ I+SSFAL+ V +ALPL
Sbjct: 6 LDAIDRRILAKLQEDARISNVDLAKGAGISPSPCLRRVRALEERGVIRGYVTVLDQTAVGLPVSIFVSVSLERQIERALEEFETAVSSWPEVLECYLMTGDADYLLRVVVPDLSAYERFLMDHLTRVPGVSSIKSSFALKQVSHRSALPL 155
BLAST of mRNA_P-wetherbeei_contig8448.1.1 vs. uniprot
Match: UPI001AE8DAE6 (Lrp/AsnC family transcriptional regulator n=1 Tax=Azospirillum picis TaxID=488438 RepID=UPI001AE8DAE6) HSP 1 Score: 192 bits (487), Expect = 5.330e-60 Identity = 98/152 (64.47%), Postives = 120/152 (78.95%), Query Frame = 1
Query: 16 SLDSIDRRILGHLQKDGRVSNADLAERVGLSSSPCWRRVKALEEAGVIKGYTAQVDARAVGLSVNVFVSVSLSTQVEKSLQAFERAAANRPEVMECYLMTGDSDYLLRVVVPDLDAYERFVMD-FTKIPGIAQIRSSFALRPVKQGAALPLD 468
+LD IDR+IL LQ+DGR+ N +LAERVGLS SPC RRVKALEEAGVI Y A VD +V L +N+FVSVSL Q+E+ + AFE A RPEV+ECYLMTGD+DYLLRV+VPDL +YERF+ D T+IPG+A IRSSFAL+ V+ +LPL+
Sbjct: 5 NLDRIDRKILSALQEDGRLHNNELAERVGLSPSPCLRRVKALEEAGVISRYVALVDPASVDLQLNIFVSVSLERQIEERIDAFESAVMTRPEVLECYLMTGDADYLLRVMVPDLASYERFLKDHLTRIPGVANIRSSFALKQVRYRTSLPLE 156
BLAST of mRNA_P-wetherbeei_contig8448.1.1 vs. uniprot
Match: UPI0015D49CCF (Lrp/AsnC family transcriptional regulator n=1 Tax=Azospirillum oleiclasticum TaxID=2735135 RepID=UPI0015D49CCF) HSP 1 Score: 191 bits (485), Expect = 1.070e-59 Identity = 99/150 (66.00%), Postives = 119/150 (79.33%), Query Frame = 1
Query: 19 LDSIDRRILGHLQKDGRVSNADLAERVGLSSSPCWRRVKALEEAGVIKGYTAQVDARAVGLSVNVFVSVSLSTQVEKSLQAFERAAANRPEVMECYLMTGDSDYLLRVVVPDLDAYERFVMD-FTKIPGIAQIRSSFALRPVKQGAALPL 465
LD IDR IL LQ+DGR++N+DL++RVGLS SPC RRVKALEE GVI+ Y A VD AV LSV+VFVSV+L QVE+ L AFE A PEV+ECYLMTG++DYLLRVVVPDL AYERF+ D T++PG+A I+SSFAL+ V+ ALPL
Sbjct: 6 LDRIDRNILALLQQDGRMANSDLSQRVGLSPSPCLRRVKALEETGVIRNYVALVDPAAVDLSVSVFVSVTLERQVEERLDAFEAAVVRWPEVLECYLMTGEADYLLRVVVPDLAAYERFLKDHLTRVPGVASIKSSFALKQVRYNTALPL 155
BLAST of mRNA_P-wetherbeei_contig8448.1.1 vs. uniprot
Match: A0A2E7R9H3_9PROT (ArsR family transcriptional regulator n=2 Tax=Rhodospirillaceae bacterium TaxID=1898112 RepID=A0A2E7R9H3_9PROT) HSP 1 Score: 190 bits (483), Expect = 2.240e-59 Identity = 95/151 (62.91%), Postives = 118/151 (78.15%), Query Frame = 1
Query: 19 LDSIDRRILGHLQKDGRVSNADLAERVGLSSSPCWRRVKALEEAGVIKGYTAQVDARAVGLSVNVFVSVSLSTQVEKSLQAFERAAANRPEVMECYLMTGDSDYLLRVVVPDLDAYERFVMD-FTKIPGIAQIRSSFALRPVKQGAALPLD 468
LD++DRRIL LQ+ R+SN DLAE+VG+S SPCWRRVK LE++GVI + + VD AVGL V+VF+ V+L Q+E +L+ FE+ RPEVMECYLMTGDSDYLLRVVV DL AYERF+MD T++ G+A I+SSFAL+ VK G ALPL
Sbjct: 6 LDAVDRRILAVLQEHARISNVDLAEQVGISPSPCWRRVKTLEDSGVIAKHVSLVDPAAVGLPVSVFIQVTLERQIETALETFEQTVLARPEVMECYLMTGDSDYLLRVVVADLSAYERFLMDHLTRLNGVASIKSSFALKQVKYGTALPLS 156 The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig8448.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-wetherbeei_contig8448.1.1 >prot_P-wetherbeei_contig8448.1.1 ID=prot_P-wetherbeei_contig8448.1.1|Name=mRNA_P-wetherbeei_contig8448.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=155bp MISLDSIDRRILGHLQKDGRVSNADLAERVGLSSSPCWRRVKALEEAGVIback to top mRNA from alignment at P-wetherbeei_contig8448:1871..2344- Legend: UTRCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-wetherbeei_contig8448.1.1 ID=mRNA_P-wetherbeei_contig8448.1.1|Name=mRNA_P-wetherbeei_contig8448.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=474bp|location=Sequence derived from alignment at P-wetherbeei_contig8448:1871..2344- (Phaeothamnion wetherbeei SAG_119_79)back to top Coding sequence (CDS) from alignment at P-wetherbeei_contig8448:1871..2344- >mRNA_P-wetherbeei_contig8448.1.1 ID=mRNA_P-wetherbeei_contig8448.1.1|Name=mRNA_P-wetherbeei_contig8448.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=465bp|location=Sequence derived from alignment at P-wetherbeei_contig8448:1871..2344- (Phaeothamnion wetherbeei SAG_119_79)back to top |