mRNA_P-wetherbeei_contig8369.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig8369.1.1
Unique NamemRNA_P-wetherbeei_contig8369.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig8369.1.1 vs. uniprot
Match: A0A836CG09_9STRA (PPIase cyclophilin-type domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CG09_9STRA)

HSP 1 Score: 102 bits (253), Expect = 5.580e-20
Identity = 57/108 (52.78%), Postives = 68/108 (62.96%), Query Frame = 2
Query:  743 KMETDLYALQKAKTRACSISFSPDGAAMAITARDKKLRVFDFRTGKLRRVYDESLPIYEAAQTAQAXXXXXXXXXXXXXXXXNLLALDPNDFGKRAAGERELEGSAAL 1066
            K+ETDLYAL KA T+ C I+ SPDGA+MA+ ARDK +RVFDFR GKLRR +DESL ++E A                       L LD +DFG+R A ERELE S AL
Sbjct:  213 KVETDLYALAKAGTQPCHIALSPDGASMAVLARDKVVRVFDFRRGKLRRAFDESLKVFERAHE------------------DGRLKLDAHDFGRRRATERELEASPAL 302          
BLAST of mRNA_P-wetherbeei_contig8369.1.1 vs. uniprot
Match: A0A6H5L6W6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6W6_9PHAE)

HSP 1 Score: 93.2 bits (230), Expect = 7.670e-19
Identity = 60/122 (49.18%), Postives = 71/122 (58.20%), Query Frame = 2
Query:  737 RMKMETDLYALQKAKTRACSISFSPDGAAMAITARDKK---LRVFDFRTGKLRRVYDESLPIYEAAQTAQAXXXXXXXXXXXXXXXXNLLALDPNDFGKRAAGERELEGSAALSAA---PQG 1084
            + KM+TDLY L KAKTR CSISFSPDG +MA+TARDK+   +R FDFRTGKLRR YDES    E    +                    L +D  D GK++A E+ELE S A  A    PQG
Sbjct:   79 KFKMDTDLYDLAKAKTRPCSISFSPDGKSMAVTARDKQAWSVRAFDFRTGKLRRKYDESRRAMEDMLAS------------------GQLKMDAMDLGKKSAVEKELEVSTAHFAGFVTPQG 182          
BLAST of mRNA_P-wetherbeei_contig8369.1.1 vs. uniprot
Match: A0A7R9UE76_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9UE76_9STRA)

HSP 1 Score: 89.4 bits (220), Expect = 8.820e-17
Identity = 48/103 (46.60%), Postives = 61/103 (59.22%), Query Frame = 2
Query:  743 KMETDLYALQKAKTRACSISFSPDGAAMAITARDKKLRVFDFRTGKLRRVYDESLPIYEAAQTAQAXXXXXXXXXXXXXXXXNLLALDPNDFGKRAAGERELE 1051
            KM TDLY L K +T AC ++ SPD  + A+TA+D+K+RVFD R GKLRR YDESL ++E A+                      L +D  D+GKR A ERELE
Sbjct:   49 KMSTDLYELVKNRTSACGLAISPDAKSFAVTAKDRKVRVFDLRRGKLRRTYDESLDVFEKAKDE------------------GRLGIDALDWGKRGAVERELE 133          
BLAST of mRNA_P-wetherbeei_contig8369.1.1 vs. uniprot
Match: A0A7S1TNM8_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1TNM8_9STRA)

HSP 1 Score: 90.1 bits (222), Expect = 5.700e-16
Identity = 51/107 (47.66%), Postives = 61/107 (57.01%), Query Frame = 2
Query:  743 KMETDLYALQKAKTRACSISFSPDGAAMAITARDKKLRVFDFRTGKLRRVYDESLPIYEAAQTAQAXXXXXXXXXXXXXXXXNLLALDPNDFGKRAAGERELEGSAA 1063
            K +TDLY L KAKT AC ++  P   + AITA D+K+RVFD R GKLRR YDESL ++  AQ A                    L LD  D+GKR A EREL G+ A
Sbjct:  248 KFDTDLYDLVKAKTTACGLAVCPQSRSFAITAADRKVRVFDLRKGKLRRTYDESLEVFNRAQAA------------------GKLGLDSMDWGKRGATERELAGNTA 336          
BLAST of mRNA_P-wetherbeei_contig8369.1.1 vs. uniprot
Match: A0A1Y1ILJ4_KLENI (Cyclophilin n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1ILJ4_KLENI)

HSP 1 Score: 88.6 bits (218), Expect = 1.860e-15
Identity = 56/122 (45.90%), Postives = 66/122 (54.10%), Query Frame = 2
Query:  692 PFTANLVSPFLSFVGRMKMETDLYALQKAKTRACSISFSPDGAAMAITARDKKLRVFDFRTGKLRRVYDESLPIYEAAQTAQAXXXXXXXXXXXXXXXXNLLALDPNDFGKRAAGERELEGS 1057
            P T +L S  +SF  R K +TDLYAL KAKT A S+  SPDG     T+ DK++RVF F TGKLRR YDES       Q   A                 L  LDP DFG+R A E+E+E S
Sbjct:  235 PDTGDLPSSSVSF--RYKTDTDLYALAKAKTTASSLEISPDGRQFVTTSPDKRIRVFRFETGKLRRSYDESREAAAELQRGDA----------------ELFKLDPIDFGRRLAIEKEIETS 338          
BLAST of mRNA_P-wetherbeei_contig8369.1.1 vs. uniprot
Match: G4ZVH8_PHYSP (PPIase cyclophilin-type domain-containing protein n=9 Tax=Phytophthora TaxID=4783 RepID=G4ZVH8_PHYSP)

HSP 1 Score: 87.8 bits (216), Expect = 3.210e-15
Identity = 51/111 (45.95%), Postives = 63/111 (56.76%), Query Frame = 2
Query:  737 RMKMETDLYALQKAKTRACSISFSPDGAAMAITARDKKLRVFDFRTGKLRRVYDESLPIYEAAQTAQAXXXXXXXXXXXXXXXXNLLALDPNDFGKRAAGERELEGSAALS 1069
            + K ETDLY L K KT A +I  S DG +  +TA+D ++RVF F TGK+RR YDESLP++E AQ                      L LD  DFG+RAA EREL  S  +S
Sbjct:  219 KFKGETDLYELAKCKTYATAIDVSADGKSFVVTAKDNQIRVFRFATGKMRRKYDESLPVFEDAQA------------------DGTLHLDALDFGRRAAVERELANSDVVS 311          
BLAST of mRNA_P-wetherbeei_contig8369.1.1 vs. uniprot
Match: A0A2P4Y9K0_9STRA (Peptidylprolyl isomerase domain and WD repeat-containing protein 1 (Fragment) n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4Y9K0_9STRA)

HSP 1 Score: 85.9 bits (211), Expect = 1.190e-14
Identity = 51/111 (45.95%), Postives = 65/111 (58.56%), Query Frame = 2
Query:  737 RMKMETDLYALQKAKTRACSISFSPDGAAMAITARDKKLRVFDFRTGKLRRVYDESLPIYEAAQTAQAXXXXXXXXXXXXXXXXNLLALDPNDFGKRAAGERELEGSAALS 1069
            + K ETDLY L K+KT   +I  S DG +  +TA+DK++RVF F TGK+RR YDESL ++E AQ   +                  L LD  DFG+RAA EREL  S A+S
Sbjct:  237 KFKGETDLYELAKSKTYVTAIDVSRDGQSFVVTAKDKQIRVFRFTTGKMRRKYDESLAVFEDAQADGS------------------LHLDALDFGRRAAVERELADSDAVS 329          
BLAST of mRNA_P-wetherbeei_contig8369.1.1 vs. uniprot
Match: A0A5D6YCT6_9STRA (PPIase cyclophilin-type domain-containing protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6YCT6_9STRA)

HSP 1 Score: 84.7 bits (208), Expect = 3.500e-14
Identity = 52/113 (46.02%), Postives = 61/113 (53.98%), Query Frame = 2
Query:  737 RMKMETDLYALQKAKTRACSISFSPDGAAMAITARDKKLRVFDFRTGKLRRVYDESLPIYEAAQTAQAXXXXXXXXXXXXXXXXNLLALDPNDFGKRAAGERELEGSAALSAA 1075
            + K +TDLY L K   R  SI  S  GA   +TA D +LRVF F TGKLRR YDE+LP++E AQ   A                  L LD  DFG+RAA EREL G+    AA
Sbjct:  256 KFKSDTDLYELAKRGARPTSIDVSASGADFVVTATDAQLRVFRFATGKLRRTYDEALPVFEDAQADGA------------------LRLDALDFGRRAAVERELAGAVDAGAA 350          
BLAST of mRNA_P-wetherbeei_contig8369.1.1 vs. uniprot
Match: UPI001BF6CD83 (Uncharacterized protein n=2 Tax=Carya illinoinensis TaxID=32201 RepID=UPI001BF6CD83)

HSP 1 Score: 83.6 bits (205), Expect = 8.120e-14
Identity = 47/105 (44.76%), Postives = 62/105 (59.05%), Query Frame = 2
Query:  737 RMKMETDLYALQKAKTRACSISFSPDGAAMAITARDKKLRVFDFRTGKLRRVYDESLPIYEAAQTAQAXXXXXXXXXXXXXXXXNLLALDPNDFGKRAAGERELE 1051
            R+K +TDL+ + K KT   +I  SPDG   +IT+ D+++RVF FRTGKLRRVYDESL + +  Q + A                 L  LD  DFG+R A E+ELE
Sbjct:  235 RLKSDTDLFEIVKCKTSVSAIEVSPDGKQFSITSPDRRIRVFWFRTGKLRRVYDESLEVAQDLQRSDAP----------------LYRLDAIDFGRRMAVEKELE 323          
BLAST of mRNA_P-wetherbeei_contig8369.1.1 vs. uniprot
Match: A0A2J6JRM4_LACSA (Uncharacterized protein n=1 Tax=Lactuca sativa TaxID=4236 RepID=A0A2J6JRM4_LACSA)

HSP 1 Score: 79.7 bits (195), Expect = 1.060e-13
Identity = 47/105 (44.76%), Postives = 63/105 (60.00%), Query Frame = 2
Query:  737 RMKMETDLYALQKAKTRACSISFSPDGAAMAITARDKKLRVFDFRTGKLRRVYDESLPIYEAAQTAQAXXXXXXXXXXXXXXXXNLLALDPNDFGKRAAGERELE 1051
            ++K +TDL+A+ K+KT   +I  SPDG   AIT+ D+++R+F +RTGKLRRVYDESL   E AQ  Q                  L  L+  DFG+R A ERE+E
Sbjct:   25 KLKSDTDLFAIVKSKTAISAIEVSPDGKQFAITSPDRRIRIFWYRTGKLRRVYDESL---ENAQDLQRSDVP-------------LYRLEAIDFGRRMAVEREIE 113          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig8369.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A836CG09_9STRA5.580e-2052.78PPIase cyclophilin-type domain-containing protein ... [more]
A0A6H5L6W6_9PHAE7.670e-1949.18Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7R9UE76_9STRA8.820e-1746.60Hypothetical protein (Fragment) n=1 Tax=Pinguiococ... [more]
A0A7S1TNM8_9STRA5.700e-1647.66Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
A0A1Y1ILJ4_KLENI1.860e-1545.90Cyclophilin n=1 Tax=Klebsormidium nitens TaxID=105... [more]
G4ZVH8_PHYSP3.210e-1545.95PPIase cyclophilin-type domain-containing protein ... [more]
A0A2P4Y9K0_9STRA1.190e-1445.95Peptidylprolyl isomerase domain and WD repeat-cont... [more]
A0A5D6YCT6_9STRA3.500e-1446.02PPIase cyclophilin-type domain-containing protein ... [more]
UPI001BF6CD838.120e-1444.76Uncharacterized protein n=2 Tax=Carya illinoinensi... [more]
A0A2J6JRM4_LACSA1.060e-1344.76Uncharacterized protein n=1 Tax=Lactuca sativa Tax... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig8369contigP-wetherbeei_contig8369:935..2823 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog67593.Physo108214
PFAMsPro_isomerase,WD40
Model size1110
Max annot lvl4776|Peronosporales
KEGG koko:K12736
Hectar predicted targeting categoryother localisation
Exons4
Evalue3.93e-18
EggNOG OGsKOG0882@1|root,KOG0882@2759|Eukaryota,3Q8I2@4776|Peronosporales
Ec32 ortholog descriptionCyclophilin-like domain
Ec32 orthologEc-04_000060.1
EC5.2.1.8
DescriptionCyclophilin type peptidyl-prolyl cis-trans isomerase/CLD
Cds size369
COG categoryO
BRITEko00000,ko01000,ko03041,ko03110
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187036.01012-CDS-P-wetherbeei_contig8369:934..10181683187036.01012-CDS-P-wetherbeei_contig8369:934..1018Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig8369 935..1018 -
1683187036.0226634-CDS-P-wetherbeei_contig8369:1393..14651683187036.0226634-CDS-P-wetherbeei_contig8369:1393..1465Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig8369 1394..1465 -
1683187036.0340238-CDS-P-wetherbeei_contig8369:1519..16211683187036.0340238-CDS-P-wetherbeei_contig8369:1519..1621Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig8369 1520..1621 -
1683187036.0434504-CDS-P-wetherbeei_contig8369:1973..20841683187036.0434504-CDS-P-wetherbeei_contig8369:1973..2084Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig8369 1974..2084 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187036.0593736-UTR-P-wetherbeei_contig8369:2084..28231683187036.0593736-UTR-P-wetherbeei_contig8369:2084..2823Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig8369 2085..2823 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig8369.1.1prot_P-wetherbeei_contig8369.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig8369 935..2084 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig8369.1.1

>prot_P-wetherbeei_contig8369.1.1 ID=prot_P-wetherbeei_contig8369.1.1|Name=mRNA_P-wetherbeei_contig8369.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=123bp
MKMETDLYALQKAKTRACSISFSPDGAAMAITARDKKLRVFDFRTGKLRR
VYDESLPIYEAAQTAQAEAEAAGPPPPPLPVPVNLLALDPNDFGKRAAGE
RELEGSAALSAAPQGVGGALDRQ
back to top

mRNA from alignment at P-wetherbeei_contig8369:935..2823-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig8369.1.1 ID=mRNA_P-wetherbeei_contig8369.1.1|Name=mRNA_P-wetherbeei_contig8369.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1889bp|location=Sequence derived from alignment at P-wetherbeei_contig8369:935..2823- (Phaeothamnion wetherbeei SAG_119_79)
AGACGGCGAGTGGTGGGAGTGACGATATGGCCTGGATCCCCACGCCCTGC CGTGGTGCGCGAGCTGCAGATCCGGACTGTCCTGCCAGAGACCGGCGCGA CGCGCGCCGCTACACGGCTGTGCAGCGACGCGATGCTGCGTGATTGTTGG CAGTCGCTGCTGCTGAACGCTTCTCGATTGGTTCGTGATGCAGCCGCGTT GAGGACGCGCTACCTCGGTGCACTCTGAAACACGCCCGCGCCCGACAGTT TCGGCGCGGCGGCTGGGGCGGCAGCAGGAGGGGCGTGTTTTCGTAGCACC CGGCTGGCTGACGCCGCCATTTCTTGGCTGTAACGCCATACCGTCCCGAG GCACAAGAAGCAGCAGCGCCCAGCGACTCCACCATGGTCTCGTTTTAACG CTGCGCGGCAGCGGATGACCCGGTTCTGAGTCTGGCGCGTCATCGCGGGG CTGGCGTTGGAGTCATGGCACGCCTGCCGCCTCTTCCGCTGCTCTCTATC TGCGGCCGCGGACCCGCTACGGTTGCAGCCCCGCTTGCCGTATTTGAAAC GATTCATGGCGACTTGTCGTTCGTGAAAAGCGTTACGAGCTGCTGGGCGT CGCTGTTTCGGTCGTGCAAGTGGAGAGATTGCGTTTTGGGGGGTTTTCTT CTAACCTGGGAAGCCCTGATGGCGGCTTTGTTTCTTTGTAACCTTTCACA GCCAACCTTGTATCTCCTTTTCTCTCTTTCGTCGGCAGGATGAAGATGGA GACGGACCTGTATGCGCTGCAGAAGGCCAAGACGCGGGCCTGCAGCATCT CCTTCAGCCCCGACGGCGCCGCCATGGCCATCACCGCCCGCGACAAGAAG GTGCGTGGAGAGGCGGACGCATGCGTGGTGTTTCTTTCAGGTTCAGTTTT TCGAAGCTTGATGGAGGCGTGGCATAGCTTTTGCCCTCGTTTTGCAGTTA AGTGATGCTGCATAGTTGCGGGTGCCTTGCGGCAGTTCCCTTCTCAATCT GGTTGCCCGTAACAGCGAGATGACTTCTCTGTTTTCCCAACGTTCTGCTC TCAACTCTTTATCTGCGCTTCCTGCGCCCTGGCCTCCTCATGGGGCACTC CGCTGCTGTCGCCTCCGAACCGTCACCCGCAACTACGGGACCGTCATTTT ACCTCACGAACCCTCGGACTAACTTCAAACTGCGGTGACGTCTCCGTAAC AGCTGCGGGTGTTTGACTTCCGGACGGGCAAGCTGCGCCGAGTCTACGAC GAATCGCTACCCATCTACGAGGCGGCCCAGACGGCGCAGGCCGAGGCCGA AGCGGCGGCGCAGCAGGCGGCGGCCTTGGCGGCGGCGGCGGACGACGACG ACGAGGAGGCGGGTCCGCCGCCGCCGCCGTTGCCGGTGCCGGTGAACCTG CTGGCCCTGGACCCGAACGACTTTGGAAAGGTAGTTGGGCGGGGTGTGCT GCGGGAGAAAGTTGGAGCGTTCTGTGATGGATCAGCTATTTTTGGTGCGG ACGAGATGTTTCTTTGTGGTTGCCTTTGGCCCCTTTCACTCCACGCTGCC TTTTGCACCTTCTTTTGTCTCAACGTTTTTTCATGACAACGGCGGCATAA AATCACGATCACCTTTAAGGTTGCGGATGACATCGTCTGCTGCCGTGGAG GTAGTCGCATGCTGCGGTTGCGACTGTTTCCCGGCCCATCGCTGCGTCTA GACTGACTATTCACCCACTCGTCCTGTCCTGCTGCCCACCGGTCGGCCTG CTCGCCCACGCGCTGCCCTGGGCACATCCATCCGTCACATCTGTCGTATC TGCAGCGCGCTGCCGGGGAGCGTGAGCTGGAAGGGTCCGCGGCGCTGTCG GCGGCGCCGCAGGGCGTCGGCGGCGCGCTCGACCGGCAG
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig8369:935..2823-

>mRNA_P-wetherbeei_contig8369.1.1 ID=mRNA_P-wetherbeei_contig8369.1.1|Name=mRNA_P-wetherbeei_contig8369.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=369bp|location=Sequence derived from alignment at P-wetherbeei_contig8369:935..2823- (Phaeothamnion wetherbeei SAG_119_79)
ATGAAGATGGAGACGGACCTGTATGCGCTGCAGAAGGCCAAGACGCGGGC
CTGCAGCATCTCCTTCAGCCCCGACGGCGCCGCCATGGCCATCACCGCCC
GCGACAAGAAGCTGCGGGTGTTTGACTTCCGGACGGGCAAGCTGCGCCGA
GTCTACGACGAATCGCTACCCATCTACGAGGCGGCCCAGACGGCGCAGGC
CGAGGCCGAAGCGGCGGGTCCGCCGCCGCCGCCGTTGCCGGTGCCGGTGA
ACCTGCTGGCCCTGGACCCGAACGACTTTGGAAAGCGCGCTGCCGGGGAG
CGTGAGCTGGAAGGGTCCGCGGCGCTGTCGGCGGCGCCGCAGGGCGTCGG
CGGCGCGCTCGACCGGCAG
back to top