mRNA_P-wetherbeei_contig8365.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig8365.2.1
Unique NamemRNA_P-wetherbeei_contig8365.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig8365.2.1 vs. uniprot
Match: A0A7S3XRL5_HETAK (Succinate--CoA ligase [ADP-forming] subunit beta, mitochondrial n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XRL5_HETAK)

HSP 1 Score: 110 bits (274), Expect = 8.290e-27
Identity = 51/78 (65.38%), Postives = 64/78 (82.05%), Query Frame = 1 
Query:   16 MAKHNIDTPDSKPATTPEEAEKLFKEMVGDDPNKDVVIKAQVLSGGRGLGTFKNGFRGGVHMCNRPEDAKLFASKMLG 249
            MAK+ + TP ++ ATTP+EAE ++++M   DPNKDVVIKAQVL+GGRGLGTF +GF+GGVHMC RP  AK +A KMLG
Sbjct:    1 MAKYGVKTPPAQVATTPDEAESIYQKMTAGDPNKDVVIKAQVLAGGRGLGTFTSGFKGGVHMCTRPGQAKDYAEKMLG 78
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BLAST of mRNA_P-wetherbeei_contig8365.2.1 vs. uniprot
Match: A0A024GFW4_9STRA (Succinate--CoA ligase [ADP-forming] subunit beta, mitochondrial n=2 Tax=Albugo TaxID=65356 RepID=A0A024GFW4_9STRA)

HSP 1 Score: 108 bits (270), Expect = 3.080e-26
Identity = 50/79 (63.29%), Postives = 63/79 (79.75%), Query Frame = 1 
Query:   16 MAKHNIDTPDSKPATTPEEAEKLFKEMVGDDPNKDVVIKAQVLSGGRGLGTFKNGFRGGVHMCNRPEDAKLFASKMLGQ 252
            M ++ I  P+  PA TP+EA+K + ++VG+  N DVVIKAQ L+GGRGLG FKNGF+GGVHMC +PEDAK FASKM+GQ
Sbjct:    1 MKEYGIQIPEGVPAMTPDEADKAYMKIVGNKSNADVVIKAQALTGGRGLGHFKNGFKGGVHMCTKPEDAKTFASKMIGQ 79
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BLAST of mRNA_P-wetherbeei_contig8365.2.1 vs. uniprot
Match: D7G0B9_ECTSI (Succinate--CoA ligase [ADP-forming] subunit beta, mitochondrial n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G0B9_ECTSI)

HSP 1 Score: 108 bits (269), Expect = 7.430e-26
Identity = 54/84 (64.29%), Postives = 66/84 (78.57%), Query Frame = 1 
Query:    1 VAMELMAKHNIDTPDSKPATTPEEAEKLFKEMVGDDPNKDVVIKAQVLSGGRGLGTFKNGFRGGVHMCNRPEDAKLFASKMLGQ 252
            V+M++MA+H+ID P SK A TPE+AEK   E++G +  KDVVIKAQVLSGGRG G F NGF  GVHMC +P DAK +AS+MLGQ
Sbjct:   52 VSMQIMAEHDIDIPASKMAETPEDAEKACAEIMGGNAMKDVVIKAQVLSGGRGRGHFDNGFESGVHMCLKPSDAKHYASEMLGQ 135
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BLAST of mRNA_P-wetherbeei_contig8365.2.1 vs. uniprot
Match: A0A067CEF9_SAPPC (Succinate--CoA ligase [ADP-forming] subunit beta, mitochondrial n=4 Tax=Saprolegniaceae TaxID=4764 RepID=A0A067CEF9_SAPPC)

HSP 1 Score: 104 bits (259), Expect = 1.590e-24
Identity = 51/83 (61.45%), Postives = 60/83 (72.29%), Query Frame = 1 
Query:    4 AMELMAKHNIDTPDSKPATTPEEAEKLFKEMVGDDPNKDVVIKAQVLSGGRGLGTFKNGFRGGVHMCNRPEDAKLFASKMLGQ 252
            +ME+M    +  P S  ATTP EAE  +  + G D  KDVVIKAQ L+GGRGLG FKNGF+GGVHMC +PEDAK FA KMLG+
Sbjct:   31 SMEIMKSFGVAIPASLHATTPAEAEAAYNTLKGGDATKDVVIKAQALTGGRGLGHFKNGFKGGVHMCTKPEDAKNFAEKMLGE 113
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BLAST of mRNA_P-wetherbeei_contig8365.2.1 vs. uniprot
Match: A0A485KYE4_9STRA (Succinate--CoA ligase [ADP-forming] subunit beta, mitochondrial n=5 Tax=Aphanomyces TaxID=100860 RepID=A0A485KYE4_9STRA)

HSP 1 Score: 102 bits (253), Expect = 1.110e-23
Identity = 47/83 (56.63%), Postives = 62/83 (74.70%), Query Frame = 1 
Query:    4 AMELMAKHNIDTPDSKPATTPEEAEKLFKEMVGDDPNKDVVIKAQVLSGGRGLGTFKNGFRGGVHMCNRPEDAKLFASKMLGQ 252
            +M++M  + +  P S+ A TPEEA  ++ ++ G D  KDVVIKAQ L+GGRGLG FKNGF+GGVHMC + EDAK FA KM+G+
Sbjct:   30 SMQIMQSYGVAIPASQHANTPEEAVNVYNKLKGGDEGKDVVIKAQALTGGRGLGHFKNGFKGGVHMCTKAEDAKTFAQKMIGE 112
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BLAST of mRNA_P-wetherbeei_contig8365.2.1 vs. uniprot
Match: H3GTW5_PHYRM (ATP-grasp domain-containing protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3GTW5_PHYRM)

HSP 1 Score: 99.4 bits (246), Expect = 2.750e-23
Identity = 48/83 (57.83%), Postives = 60/83 (72.29%), Query Frame = 1 
Query:    4 AMELMAKHNIDTPDSKPATTPEEAEKLFKEMVGDDPNKDVVIKAQVLSGGRGLGTFKNGFRGGVHMCNRPEDAKLFASKMLGQ 252
            ++E+M    + TP   PA TP EA+  F ++ GD    DVVIKAQ L+GGRGLG+FKNGF+GGVHMC RPE A+ FA KMLG+
Sbjct:   32 SLEIMKGFGVATPQGIPADTPAEAKAAFSKIRGDREGVDVVIKAQALTGGRGLGSFKNGFKGGVHMCTRPEQAEDFAKKMLGE 114
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BLAST of mRNA_P-wetherbeei_contig8365.2.1 vs. uniprot
Match: A0A7S3HR10_9STRA (Hypothetical protein (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HR10_9STRA)

HSP 1 Score: 94.0 bits (232), Expect = 9.960e-23
Identity = 46/84 (54.76%), Postives = 63/84 (75.00%), Query Frame = 1 
Query:    1 VAMELMAKHNIDTPDSKPATTPEEAEKLFKEMVGDDPNKDVVIKAQVLSGGRGLGTFKNGFRGGVHMCNRPEDAKLFASKMLGQ 252
            V+M++     I  P S  AT+ +EA+KL+K+++G+   KD VIKA VL+GGRGLG F NGF+GGVH+CN+P D + FAS+MLGQ
Sbjct:   37 VSMDIFRGFGIPVPKSGMATSVDEAKKLYKDVIGE--GKDCVIKAMVLTGGRGLGHFSNGFKGGVHLCNKPGDVEKFASQMLGQ 118
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BLAST of mRNA_P-wetherbeei_contig8365.2.1 vs. uniprot
Match: A0A024T9H2_9STRA (Succinate--CoA ligase [ADP-forming] subunit beta, mitochondrial n=2 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024T9H2_9STRA)

HSP 1 Score: 98.6 bits (244), Expect = 2.050e-22
Identity = 45/83 (54.22%), Postives = 63/83 (75.90%), Query Frame = 1 
Query:    4 AMELMAKHNIDTPDSKPATTPEEAEKLFKEMVGDDPNKDVVIKAQVLSGGRGLGTFKNGFRGGVHMCNRPEDAKLFASKMLGQ 252
            +M++M  + +  P S+ A TPE+A +++ ++ G +  KDVVIKAQ L+GGRGLG FKNGF+GGVHMC + EDAK FA KM+G+
Sbjct:   29 SMKIMQSYGVAIPASEAADTPEQAVQVYNKLKGGNDTKDVVIKAQALTGGRGLGHFKNGFKGGVHMCTKAEDAKKFAQKMIGE 111
[Close]
BLAST of mRNA_P-wetherbeei_contig8365.2.1 vs. uniprot
Match: B7FXA2_PHATC (Succinate--CoA ligase [ADP-forming] subunit beta, mitochondrial n=1 Tax=Phaeodactylum tricornutum (strain CCAP 1055/1) TaxID=556484 RepID=B7FXA2_PHATC)

HSP 1 Score: 98.2 bits (243), Expect = 2.960e-22
Identity = 49/85 (57.65%), Postives = 61/85 (71.76%), Query Frame = 1 
Query:    1 VAMELMAKHNIDTPDSKPATTPEEAEKLFKEMVGDD--PNKDVVIKAQVLSGGRGLGTFKNGFRGGVHMCNRPEDAKLFASKMLG 249
            ++ME+M  H I TP+   A+ PEEAE +F   +     P KD+VIKAQVLSGGRGLGTFKNGF+GGVHM  +P  A+ FA+ MLG
Sbjct:   31 ISMEIMKNHGIQTPECYVASNPEEAENIFLNSLNRPGAPKKDIVIKAQVLSGGRGLGTFKNGFKGGVHMVTKPGQAREFAAAMLG 115
[Close]
BLAST of mRNA_P-wetherbeei_contig8365.2.1 vs. uniprot
Match: A0A484DU65_BRELC (Succinate--CoA ligase [ADP-forming] subunit beta, mitochondrial n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484DU65_BRELC)

HSP 1 Score: 96.3 bits (238), Expect = 1.440e-21
Identity = 46/83 (55.42%), Postives = 61/83 (73.49%), Query Frame = 1 
Query:    4 AMELMAKHNIDTPDSKPATTPEEAEKLFKEMVGDDPNKDVVIKAQVLSGGRGLGTFKNGFRGGVHMCNRPEDAKLFASKMLGQ 252
            ++E+M +  + TP   PA TP EA+  F+++ GD    DVVIKAQ L+GGRGLGTF+NGF+GGVHMC RPE A+  A+KML +
Sbjct:   32 SLEIMKRFGVATPLGIPADTPAEAKAAFEQIRGDREGVDVVIKAQALTGGRGLGTFQNGFKGGVHMCTRPEQAEEIANKMLNE 114
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig8365.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S3XRL5_HETAK8.290e-2765.38Succinate--CoA ligase [ADP-forming] subunit beta, ... [more]
A0A024GFW4_9STRA3.080e-2663.29Succinate--CoA ligase [ADP-forming] subunit beta, ... [more]
D7G0B9_ECTSI7.430e-2664.29Succinate--CoA ligase [ADP-forming] subunit beta, ... [more]
A0A067CEF9_SAPPC1.590e-2461.45Succinate--CoA ligase [ADP-forming] subunit beta, ... [more]
A0A485KYE4_9STRA1.110e-2356.63Succinate--CoA ligase [ADP-forming] subunit beta, ... [more]
H3GTW5_PHYRM2.750e-2357.83ATP-grasp domain-containing protein n=1 Tax=Phytop... [more]
A0A7S3HR10_9STRA9.960e-2354.76Hypothetical protein (Fragment) n=1 Tax=Spumella e... [more]
A0A024T9H2_9STRA2.050e-2254.22Succinate--CoA ligase [ADP-forming] subunit beta, ... [more]
B7FXA2_PHATC2.960e-2257.65Succinate--CoA ligase [ADP-forming] subunit beta, ... [more]
A0A484DU65_BRELC1.440e-2155.42Succinate--CoA ligase [ADP-forming] subunit beta, ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig8365contigP-wetherbeei_contig8365:1263..1853 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D7G0B9
PFAMsATP-grasp_2,Ligase_CoA
Model size252
Max annot lvl2759|Eukaryota
KEGG rclassRC00004,RC00014
KEGG koko:K01900
KEGG ReactionR00432,R00727
KEGG Pathwayko00020,ko00640,ko01100,ko01110,ko01120,ko01130,ko01200,map00020,map00640,map01100,map01110,map01120,map01130,map01200
KEGG ModuleM00009,M00011
Hectar predicted targeting categoryother localisation
Exons3
Evalue7.88e-26
EggNOG OGsCOG0045@1|root,KOG2799@2759|Eukaryota
Ec32 ortholog descriptionSuccinate:CoA ligase (ADP-forming)
Ec32 orthologEc-02_001020.1
EC6.2.1.4,6.2.1.5
Descriptionsuccinate-CoA ligase (ADP-forming) activity
Cds size246
COG categoryC
BRITEko00000,ko00001,ko00002,ko01000,ko04147
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187035.9104326-UTR-P-wetherbeei_contig8365:1262..12681683187035.9104326-UTR-P-wetherbeei_contig8365:1262..1268Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig8365 1263..1268 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187035.921031-CDS-P-wetherbeei_contig8365:1268..13711683187035.921031-CDS-P-wetherbeei_contig8365:1268..1371Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig8365 1269..1371 +
1683187035.9298654-CDS-P-wetherbeei_contig8365:1562..16621683187035.9298654-CDS-P-wetherbeei_contig8365:1562..1662Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig8365 1563..1662 +
1683187035.9404314-CDS-P-wetherbeei_contig8365:1810..18531683187035.9404314-CDS-P-wetherbeei_contig8365:1810..1853Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig8365 1811..1853 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig8365.2.1prot_P-wetherbeei_contig8365.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig8365 1269..1853 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig8365.2.1

>prot_P-wetherbeei_contig8365.2.1 ID=prot_P-wetherbeei_contig8365.2.1|Name=mRNA_P-wetherbeei_contig8365.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=82bp
MELMAKHNIDTPDSKPATTPEEAEKLFKEMVGDDPNKDVVIKAQVLSGGR
GLGTFKNGFRGGVHMCNRPEDAKLFASKMLGQ
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mRNA from alignment at P-wetherbeei_contig8365:1263..1853+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig8365.2.1 ID=mRNA_P-wetherbeei_contig8365.2.1|Name=mRNA_P-wetherbeei_contig8365.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=591bp|location=Sequence derived from alignment at P-wetherbeei_contig8365:1263..1853+ (Phaeothamnion wetherbeei SAG_119_79)
GTTGCCATGGAGCTGATGGCGAAGCACAACATCGACACGCCGGATTCAAA
GCCAGCGACGACCCCGGAGGAGGCGGAAAAGCTGTTTAAGGAGATGGTCG
GTGACGATCGTAAGTTTGCGGGCTCTTGGTGATCTGACTCTTTCTGAATC
GTCCTTCCCTGGAGCTCCTGCCCAACCTGCAACAAAATGCTTCGTCTTAC
ATTGACTTGCCACTCCCTGACTTAAAAGCGTTATCTACCGTGGTTGCGAT
ATCCCTTAGCTAAGCCATAAACAAAAAGCCGTTCTCAACGCCCCGTGCAG
CGAACAAGGACGTCGTCATCAAGGCGCAGGTGCTCAGCGGGGGGCGTGGC
TTGGGGACGTTCAAGAACGGCTTCCGCGGCGGCGTGCACATGTGCAACCG
GTTAGTTGCCAAATGCACGTCAGGTTTTTGGTCAGCTGCTGCTGTACAAT
GCCCTACTAGGTACTCCAGGCTTGTGCCTGGACATGACTGAAAAACGAGA
CTTTTGGCCTGTTTTTCCAAACCCCACTTTTGGAATTGCATTCCGCAGGC
CCGAGGACGCCAAGCTCTTCGCGTCGAAGATGCTCGGTCAG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig8365:1263..1853+

>mRNA_P-wetherbeei_contig8365.2.1 ID=mRNA_P-wetherbeei_contig8365.2.1|Name=mRNA_P-wetherbeei_contig8365.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=246bp|location=Sequence derived from alignment at P-wetherbeei_contig8365:1263..1853+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGAGCTGATGGCGAAGCACAACATCGACACGCCGGATTCAAAGCCAGC
GACGACCCCGGAGGAGGCGGAAAAGCTGTTTAAGGAGATGGTCGGTGACG
ATCCGAACAAGGACGTCGTCATCAAGGCGCAGGTGCTCAGCGGGGGGCGT
GGCTTGGGGACGTTCAAGAACGGCTTCCGCGGCGGCGTGCACATGTGCAA
CCGGCCCGAGGACGCCAAGCTCTTCGCGTCGAAGATGCTCGGTCAG
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