mRNA_P-wetherbeei_contig8360.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig8360.1.1
Unique NamemRNA_P-wetherbeei_contig8360.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig8360.1.1 vs. uniprot
Match: A0A177T867_9BASI (Protein kinase domain-containing protein n=1 Tax=Tilletia indica TaxID=43049 RepID=A0A177T867_9BASI)

HSP 1 Score: 57.4 bits (137), Expect = 5.950e-5
Identity = 26/66 (39.39%), Postives = 41/66 (62.12%), Query Frame = 2 
Query:  560 VLLPRYQESLQSLIDKQKQRKRGGSPFFRTLDLLWFATDMLAAAAHLHRHGFVHNDIKPDNLLVTR 757
            +++P Y+ +LQ LID Q+ R+       R       A  +++A AH+HRHG VH D+KP N+++TR
Sbjct:  224 IIMPLYERTLQDLIDDQEGRE------LRPRKSRQLAKQLISAVAHIHRHGLVHLDLKPSNIMITR 283
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig8360.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A177T867_9BASI5.950e-539.39Protein kinase domain-containing protein n=1 Tax=T... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig8360contigP-wetherbeei_contig8360:78..2719 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2850.Phatr25974
PFAMsPkinase
Model size2024
Max annot lvl2836|Bacillariophyta
Hectar predicted targeting categorymitochondrion
Exons3
Evalue1.11e-07
EggNOG OGsKOG0592@1|root,KOG0592@2759|Eukaryota,2XCZD@2836|Bacillariophyta
Ec32 ortholog descriptionProtein kinase-like domain
Ec32 orthologEc-02_001640.1
DescriptionTPR repeat
Cds size1848
COG categoryT
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187035.7305055-CDS-P-wetherbeei_contig8360:77..8811683187035.7305055-CDS-P-wetherbeei_contig8360:77..881Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig8360 78..881 -
1683187035.7406237-CDS-P-wetherbeei_contig8360:1215..16971683187035.7406237-CDS-P-wetherbeei_contig8360:1215..1697Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig8360 1216..1697 -
1683187035.7515526-CDS-P-wetherbeei_contig8360:1982..25441683187035.7515526-CDS-P-wetherbeei_contig8360:1982..2544Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig8360 1983..2544 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187035.7595665-UTR-P-wetherbeei_contig8360:2544..27191683187035.7595665-UTR-P-wetherbeei_contig8360:2544..2719Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig8360 2545..2719 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig8360.1.1prot_P-wetherbeei_contig8360.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig8360 78..2544 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig8360.1.1

>prot_P-wetherbeei_contig8360.1.1 ID=prot_P-wetherbeei_contig8360.1.1|Name=mRNA_P-wetherbeei_contig8360.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=616bp
MALATVRLRDLLIGPRLGRRRDGGGGFQGVNSRVFSCALNGRPGGTDETF
ALKILFTFQSNGGGGGGAGGASTQEEDLPREVALLRRIPRHGNVITCVHT
FRDFVAPDRWSELFYGLDSALISPCTDFVLLPRYQESLQSLIDKQKQRKR
GGSPFFRTLDLLWFATDMLAAAAHLHRHGFVHNDIKPDNLLVTRGDRGRE
TLVLTDFETCLDLNDAVADSVATPATAAAAAAADPRDAEAAAMAVQAAAT
AAAVAAWAEAPVAGARAAAGTTARAVGGPATAGTPEAAMAAAAAAPAARS
CFVRPFDDHFDLGASLFKAPELLRAVRRGGPMDFGKSDAFSCGMCLYLML
CLTGTAPFTSDADMKSGAVDTATMADGGNGGGGGGSCAGSGITWASNDSG
GWNDDSFVVFDELRQRDAGYQPLPGPSADDRSGYPQWVCDVVAALLRTAP
FERMSAEAALRLARGRAAALQGAVRAAGASVGFGGDDEGSALRQRRESGS
GKAGSGGTDGCCGDGGGTGGVAGVRGGVCGGVDGTGGPEELTDLDELVRH
DRFTQLRDAFELADRGTIWGILESCDWDVAAASEVLVDSVLPSATVAAAA
APMAAAAASTATAAGW
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mRNA from alignment at P-wetherbeei_contig8360:78..2719-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig8360.1.1 ID=mRNA_P-wetherbeei_contig8360.1.1|Name=mRNA_P-wetherbeei_contig8360.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=2642bp|location=Sequence derived from alignment at P-wetherbeei_contig8360:78..2719- (Phaeothamnion wetherbeei SAG_119_79)
TCCTGGTTATGGCACCCGCGACGTTCATGCTACCGGTACCCTGCGACTGG
GCCGACGTGACCAGGCATTTGTGGCGCGAAACACATAAGGGGGGTCTCCG
TCTCGTCCCAAGTGCCTATTATTTGGAGCGGTTCCCTAAACAGAGAACCC
CGCGGGTAGAAGGATCGCTGTAGGAATGGCGCTCGCGACAGTACGCTTAC
GAGACCTCTTGATCGGGCCGAGGCTCGGACGGCGACGGGATGGCGGTGGC
GGCTTCCAAGGCGTAAATTCAAGAGTCTTCTCGTGCGCCTTGAATGGGAG
ACCCGGCGGGACCGATGAAACCTTCGCTCTCAAGATCCTCTTCACCTTTC
AGAGCAACGGCGGCGGCGGCGGCGGCGCCGGCGGCGCCAGCACTCAGGAG
GAAGACCTGCCAAGAGAAGTTGCTCTTCTTCGTCGCATCCCTCGCCATGG
CAACGTCATTACATGTGTGCATACATTCCGCGACTTTGTAGCGCCGGATC
GTTGGTCGGAGCTCTTCTACGGCCTCGACAGCGCCCTCATCTCTCCATGC
ACTGATTTCGTGCTCTTGCCAAGGTATCAGGAGAGCCTTCAGTCCCTGAT
AGATAAACAGAAGCAGCGAAAGCGCGGCGGAAGCCCGTTCTTTCGGACCT
TGGACTTGCTGTGGTTTGCAACGGACATGCTGGCGGCCGCCGCGCATCTT
CATCGCCATGGCTTTGTGCACAACGACATCAAACCAGGTATGGCTATTTT
TTTTGCCCTTGGTTTGCCGAAAGACCGATTCCTGCGAAATCTTTTGAAGG
AATAGCCTTAACTTCTTTGACGTCACAAGCTGCACGGCAGTTGTGTCCCT
CTATTAAAGGAAGCCGAGACGTTTAAGGTAGCATCCGCCTCTTGGCTGTC
ACGAAGCGTGAAATCTGTTAGACGGCTGACTCTGGCGTGGTTAAAAGCTC
AAGCTGCTACTTTCCCCTTTTCCTGTCATCGGTTCCTTCGCCTCTGCGTC
CACTTCTCTCCACAACGGACAGACAATCTGCTGGTGACGCGCGGGGACCG
CGGCCGGGAGACGCTCGTCCTAACCGACTTTGAAACGTGCCTCGACCTCA
ACGACGCGGTGGCAGATTCGGTGGCGACTCCGGCGACTGCCGCTGCGGCG
GCGGCTGCAGATCCCCGGGACGCGGAAGCTGCAGCGATGGCGGTACAGGC
GGCGGCCACGGCAGCGGCGGTGGCGGCGTGGGCAGAAGCGCCGGTTGCAG
GGGCGAGAGCGGCTGCAGGGACAACGGCAAGGGCGGTAGGGGGTCCTGCG
ACGGCGGGAACGCCGGAAGCTGCGATGGCGGCGGCGGCGGCGGCACCTGC
GGCGCGGAGCTGCTTCGTAAGGCCGTTCGATGACCATTTCGACCTCGGGG
CGAGCCTCTTCAAGGCGCCGGAGCTTTTGCGGGCAGTCCGGCGGGGCGGT
CCCATGGACTTTGGCAAGAGCGACGCCTTCTCCTGCGGCATGTGCCTCTA
CCTCGTGAGCTTCCGTTCCCGCCGCGTGTTATGATCTCTGCGTTGCGTTT
CTTTCTTTCTGTCACCACTCTGTCTTTGACTCTTCCGGCTGGCTGGCGAA
GTGTTTTTCCGGCCTGGGTTCGATGACTCGACAGTTGGTTGCACTGCCAC
TTCCATTCTCGCTTCTGGCAACGTGTTAGGCTGCCGGTAGCGAGGCTGGA
GGCTGGTTTCGCTATTGCATCTCTGTGCGGTGCTTGCTTTTATGCACACC
TCAGGAGCTGCACTGCTCAATTTTGAAATGTAAACCACTTCCTTTGTTTT
TGCGGATCCGTGTCTCTGCCTTACGTCGGCATTTGCAGATGCTGTGCCTA
ACCGGAACGGCCCCATTCACGAGCGACGCCGACATGAAGAGCGGCGCCGT
CGATACGGCAACTATGGCGGACGGCGGCAACGGCGGCGGCGGCGGCGGGA
GCTGCGCTGGTAGCGGCATTACTTGGGCTTCCAACGACAGTGGCGGCTGG
AACGATGACAGCTTTGTCGTTTTTGACGAGCTTCGGCAGCGGGACGCCGG
GTACCAGCCGCTGCCGGGCCCGTCTGCCGACGACCGCAGCGGCTACCCGC
AGTGGGTCTGCGATGTCGTGGCGGCGCTGCTGCGCACCGCACCATTCGAA
CGGATGTCGGCGGAGGCGGCCCTCCGGTTGGCCCGTGGCCGTGCGGCGGC
GCTGCAGGGCGCAGTGCGCGCCGCCGGCGCTTCCGTAGGCTTTGGTGGGG
ACGACGAGGGTTCGGCATTGCGGCAACGACGAGAGTCCGGCTCGGGCAAG
GCCGGCAGCGGCGGCACCGACGGCTGCTGCGGCGATGGCGGCGGTACTGG
CGGCGTCGCCGGAGTTCGCGGCGGAGTTTGCGGCGGAGTCGACGGCACGG
GTGGTCCCGAAGAACTCACAGACCTTGACGAGCTCGTTAGGCACGACCGC
TTCACGCAGCTGCGCGACGCGTTCGAGCTGGCCGACCGCGGAACGATCTG
GGGTATCCTTGAGAGCTGCGACTGGGACGTCGCCGCCGCCAGCGAGGTTC
TGGTAGATTCGGTCCTGCCGTCGGCGACGGTGGCGGCGGCGGCGGCACCG
ATGGCAGCGGCGGCGGCATCGACGGCAACGGCGGCTGGGTGG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig8360:78..2719-

>mRNA_P-wetherbeei_contig8360.1.1 ID=mRNA_P-wetherbeei_contig8360.1.1|Name=mRNA_P-wetherbeei_contig8360.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1848bp|location=Sequence derived from alignment at P-wetherbeei_contig8360:78..2719- (Phaeothamnion wetherbeei SAG_119_79)
ATGGCGCTCGCGACAGTACGCTTACGAGACCTCTTGATCGGGCCGAGGCT
CGGACGGCGACGGGATGGCGGTGGCGGCTTCCAAGGCGTAAATTCAAGAG
TCTTCTCGTGCGCCTTGAATGGGAGACCCGGCGGGACCGATGAAACCTTC
GCTCTCAAGATCCTCTTCACCTTTCAGAGCAACGGCGGCGGCGGCGGCGG
CGCCGGCGGCGCCAGCACTCAGGAGGAAGACCTGCCAAGAGAAGTTGCTC
TTCTTCGTCGCATCCCTCGCCATGGCAACGTCATTACATGTGTGCATACA
TTCCGCGACTTTGTAGCGCCGGATCGTTGGTCGGAGCTCTTCTACGGCCT
CGACAGCGCCCTCATCTCTCCATGCACTGATTTCGTGCTCTTGCCAAGGT
ATCAGGAGAGCCTTCAGTCCCTGATAGATAAACAGAAGCAGCGAAAGCGC
GGCGGAAGCCCGTTCTTTCGGACCTTGGACTTGCTGTGGTTTGCAACGGA
CATGCTGGCGGCCGCCGCGCATCTTCATCGCCATGGCTTTGTGCACAACG
ACATCAAACCAGACAATCTGCTGGTGACGCGCGGGGACCGCGGCCGGGAG
ACGCTCGTCCTAACCGACTTTGAAACGTGCCTCGACCTCAACGACGCGGT
GGCAGATTCGGTGGCGACTCCGGCGACTGCCGCTGCGGCGGCGGCTGCAG
ATCCCCGGGACGCGGAAGCTGCAGCGATGGCGGTACAGGCGGCGGCCACG
GCAGCGGCGGTGGCGGCGTGGGCAGAAGCGCCGGTTGCAGGGGCGAGAGC
GGCTGCAGGGACAACGGCAAGGGCGGTAGGGGGTCCTGCGACGGCGGGAA
CGCCGGAAGCTGCGATGGCGGCGGCGGCGGCGGCACCTGCGGCGCGGAGC
TGCTTCGTAAGGCCGTTCGATGACCATTTCGACCTCGGGGCGAGCCTCTT
CAAGGCGCCGGAGCTTTTGCGGGCAGTCCGGCGGGGCGGTCCCATGGACT
TTGGCAAGAGCGACGCCTTCTCCTGCGGCATGTGCCTCTACCTCATGCTG
TGCCTAACCGGAACGGCCCCATTCACGAGCGACGCCGACATGAAGAGCGG
CGCCGTCGATACGGCAACTATGGCGGACGGCGGCAACGGCGGCGGCGGCG
GCGGGAGCTGCGCTGGTAGCGGCATTACTTGGGCTTCCAACGACAGTGGC
GGCTGGAACGATGACAGCTTTGTCGTTTTTGACGAGCTTCGGCAGCGGGA
CGCCGGGTACCAGCCGCTGCCGGGCCCGTCTGCCGACGACCGCAGCGGCT
ACCCGCAGTGGGTCTGCGATGTCGTGGCGGCGCTGCTGCGCACCGCACCA
TTCGAACGGATGTCGGCGGAGGCGGCCCTCCGGTTGGCCCGTGGCCGTGC
GGCGGCGCTGCAGGGCGCAGTGCGCGCCGCCGGCGCTTCCGTAGGCTTTG
GTGGGGACGACGAGGGTTCGGCATTGCGGCAACGACGAGAGTCCGGCTCG
GGCAAGGCCGGCAGCGGCGGCACCGACGGCTGCTGCGGCGATGGCGGCGG
TACTGGCGGCGTCGCCGGAGTTCGCGGCGGAGTTTGCGGCGGAGTCGACG
GCACGGGTGGTCCCGAAGAACTCACAGACCTTGACGAGCTCGTTAGGCAC
GACCGCTTCACGCAGCTGCGCGACGCGTTCGAGCTGGCCGACCGCGGAAC
GATCTGGGGTATCCTTGAGAGCTGCGACTGGGACGTCGCCGCCGCCAGCG
AGGTTCTGGTAGATTCGGTCCTGCCGTCGGCGACGGTGGCGGCGGCGGCG
GCACCGATGGCAGCGGCGGCGGCATCGACGGCAACGGCGGCTGGGTGG
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