mRNA_P-wetherbeei_contig836.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig836.2.1
Unique NamemRNA_P-wetherbeei_contig836.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig836.2.1 vs. uniprot
Match: D8LSM0_ECTSI (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSM0_ECTSI)

HSP 1 Score: 180 bits (457), Expect = 1.960e-44
Identity = 113/281 (40.21%), Postives = 156/281 (55.52%), Query Frame = 1
Query:   55 MGIKRLKTFIDQRLSAANASRPLPEGASLLIDGNGWAFQLLRESGARMDLVGDYAALGQTARAAVTAMRDAGLQVGPVYFDGKQRRLKKATERHRAQQRQDQWAALQGWCLDGATPPEYIG-----------FPPPPLIIEELEAVLRDLNVPVVDCPGEADQELAKAAAADAAGNHFVLGGDSDFFLFKGCRFIPFETLQLGGNNENLDGGGDGSPRTPTAQVWERARLAELCGVSETALVEWGLLLGNDYTAHLPLDSYAGLSGQARHTTGSLDRMEAL 864
            MG+  L  +I++ L  A A   L EG +L IDG+GW F LL   G R+D  GDY  L +T    V  +R AGL++  VY DG  R++K AT   R  Q  ++ A L  + LDG     ++G           FP P L   +  A LR   V +V+CPGEADQE+AKA+A D  G  F +G DSDF +F+ CR++ F+ L L   +   +G GDG      A+VW R RLAELCG+SE  +VEW +L+GNDYT  L        S + R    +L+ ++++
Sbjct:    1 MGVAGLTGYINKNLRGAVAMEDLQEGDTLAIDGSGWMFHLLE--GQRVDHGGDYDLLHKTVVREVGRLRQAGLKL-LVYMDGPTRKMKAATRERRRGQDGEKLANLYAYTLDGGG--SFVGPGQAPDLSAEAFPLPKLAQRQFYASLRTTGVKIVECPGEADQEIAKASAEDGTGRTFAVGSDSDFLIFERCRYVHFDDLVL---HRREEGDGDGGG-VAQARVWTRTRLAELCGISERQVVEWAILMGNDYTRELSFRVIGFGSHRRRRPEKTLEYVQSM 272          
BLAST of mRNA_P-wetherbeei_contig836.2.1 vs. uniprot
Match: A0A6U4LS21_9STRA (Hypothetical protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A6U4LS21_9STRA)

HSP 1 Score: 169 bits (429), Expect = 1.180e-43
Identity = 112/265 (42.26%), Postives = 141/265 (53.21%), Query Frame = 1
Query:   55 MGIKRLKTFIDQRLSAANASRPLPEGASLLIDGNGWAFQLLRESGARMDLVGDYAALGQTARAAVTAMRDAGLQVGPVYFDGKQRRLKKATERHRAQQRQDQWAALQGWCLDGATPPEYIGFPPPPLIIEELEAVLRDLNVPVVDCPGEADQELAKAAAADAAGNHFVLGGDSDFFLFKGCRFIPFETLQLGGNNENLDGGGDGSPRTPTAQVWERARLAELCGVSETALVEWGLLLGNDYTAHLPLDSYAGLSGQARHTTGSLD 849
            MG+K L T++        +   LP G  +LIDGNGW   LLR+   R  L G Y AL    RA +  +  A L+V  V+FDG  R  K    R R + + +QW AL  +CLDG  P +    PPPPL++E++   L DL+VP+    GEAD +LA AAA   A N  V   DSDF + +G R+ PF      G +E L G G        A VW RA +AEL G+SE ALVE  LLLGNDYT       YAGL G+     G  D
Sbjct:    1 MGVKGLATYVAGLAHPDGSPGALPGGTLVLIDGNGWMHHLLRQVPGREHL-GAYQALDALVRAQIKVLSKAQLRVS-VFFDGSVRVHKSDALRKRQESQAEQWEALYEYCLDGRRPADDDKLPPPPLLLEQVRGTLEDLHVPICQSEGEADFDLAYAAAH--APNAVVWASDSDFLVTRGVRYAPF------GGSEVLPGVG------LVAAVWTRAAVAELMGLSEAALVEMALLLGNDYTMGFGPGDYAGLGGEVAAALGRRD 249          
BLAST of mRNA_P-wetherbeei_contig836.2.1 vs. uniprot
Match: A0A7S3HTM6_9STRA (Hypothetical protein (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HTM6_9STRA)

HSP 1 Score: 147 bits (372), Expect = 2.380e-35
Identity = 125/390 (32.05%), Postives = 181/390 (46.41%), Query Frame = 1
Query:   58 GIKRLKTFIDQRLSAANASRPLPEGASLLIDGNGWAFQLLRES-GARMDLVGDYAALGQTARAAVTAMRDAGLQVGPVYFDGKQRRLKKATERHRAQQRQDQWAALQGWCLDGATPPEYIGFPPPPLIIEELEAVLRDLNVPVVDCPGEADQELAKAAA------ADAAGNHFVLGGDSDFFLFKGCRFIPFETLQLGGNNENLDGGGDGSPRTPT--------------AQVWERARLAELCGVSETALVEWGLLLGNDYTAHLP--LDSYAGLSGQARHTTGSLDRMEALDDLLRFLAERGD-GYQLAPAAAAXXXXXXAAINPPVEECSD----LGGSGASAGHGASGGKDDTPVAAADY---VALALAFSRALYELQPLEGFPVDS 1134
            GI+ L+ ++  +L        LP  A+L+IDG+GW FQLL  S   R +L G Y +L ++  A VT +R  GL +  V FDG  +++K  T   RA   ++QWA    +C +     +   FP PPL  ++L A L+ L V    C GEADQE+AKA        A     HF  G DSD+F  K C +I F  + L   NE L         TPT              A+VW R  + E  GVSE   + W +L+GNDYT H     D    +  + R       R + L++LL   A   + G  +  A+         A    V+   +    +G S  + G        ++ V   ++   V LA+ +S A+Y+LQ L+ FP+DS
Sbjct:    1 GIRGLQNYLATKLDGVVLPTTLPVNATLVIDGDGWVFQLLETSHDFRPELGGCYNSLEESIAAEVTRLRSCGLNL-LVLFDGPDQKMKSDTRAARATDHEEQWAKFYDFCEENVKRTDNDTFPLPPLSQKQLYATLKKLGVACKSCSGEADQEIAKAVQFGNKDLAVGEETHFAYGRDSDYFAMKDCPYIAFGGIALV-ENEALFTSPQRMRVTPTKASLLRQKPTHQAVARVWRRIEICEALGVSENTFLNWVVLIGNDYTGHFDRHCDFNIAVPSELRG-----HRPDVLEELLAVAAVAAEEGVVVGAASLTAIPAADLAATTTVDSVDNPEIVVGISAPALG--------ESSVRCREHHRKVQLAVDYSLAVYQLQALDHFPLDS 375          
BLAST of mRNA_P-wetherbeei_contig836.2.1 vs. uniprot
Match: A0A7S1XZQ7_9STRA (Hypothetical protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XZQ7_9STRA)

HSP 1 Score: 94.0 bits (232), Expect = 1.240e-17
Identity = 60/135 (44.44%), Postives = 72/135 (53.33%), Query Frame = 1
Query:  445 ELEAVLRDLNVPVVDCPGEADQELAKAAAADAAGNHFVLGGDSDFFLFKGCRFIPFETLQLGGNNENLDGGGDGSPRTPTAQVWERARLAELCGVSETALVEWGLLLGNDYTAHLPLDSYAGLSGQARHTTGSLD 849
            ++   L DL+VP+    GEAD +LA AAA   A N  V   DSDF + +G R+ PF      G +E L G G        A VW RA +AEL G+SE ALVE  LLLGNDYT       YAGL G+     G  D
Sbjct:   23 QVRGTLEDLHVPICQSEGEADFDLAYAAAH--APNAVVWASDSDFLVTRGVRYAPF------GGSEVLPGVG------LVAAVWTRAAVAELMGLSEAALVEMALLLGNDYTMGFGPGDYAGLGGEVAAALGRRD 143          
BLAST of mRNA_P-wetherbeei_contig836.2.1 vs. uniprot
Match: A0A7S3TKS1_EMIHU (Hypothetical protein (Fragment) n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=A0A7S3TKS1_EMIHU)

HSP 1 Score: 91.7 bits (226), Expect = 1.850e-16
Identity = 111/386 (28.76%), Postives = 154/386 (39.90%), Query Frame = 1
Query:  427 PPLIIEELEAVLRDLNVPVVDCPGEADQELA-KAAAADAA--GNHFVLGGDSDFFLFKGCRFIPFETLQLGGNNENLDGGGDG--------SPRTPTAQVWERARLAELCGVSETALVEWGLLLGNDYTAHLPLDSYAGLSGQARHTTGSLDRMEALDDLLRFLAERGDGYQLAPAAAAXXXXXXAAINPPVEECSDLGGSGASAGHGASGGKDDTPVAAADYVALALAFSRALYELQ--PLEGFPVDSPGRSPDGSPPVSYPATATRLLLGYEFVAMQAARAVCDAGDNDVDKYQAAALVAMASGARRPFPQEQRPD--------------------------WEDVRVAWAYQKVLERFLSAMELP-EAPSRCYDGATFHALAR 1464
            PPL++E L        V +  C GEAD E+A + AAA+A   G  FV+  DSDFFLF+G R++ F  L L            G         P     +VW R  L E  G+S   LV+W  L+GND+T+   L S+  +  ++    G      + +    +LAER                                      G  A G  +     A   +A AL FSRALYEL    L  FP       PD S   + P        G +  ++ AA A+ +  D  + +     +VA A G R+P P E  P                           WEDV VA  YQ + +  L A  LP ++P + +DG +FHA A+
Sbjct:    1 PPLMVELLAQCAEAEGVRLTRCDGEADAEVACECAAAEATRPGLCFVVAEDSDFFLFRGIRYVRFSDLLLLCXXXXXXXXXQGLRLCERQAGPLLLLGRVWTRQLLCEASGLSAGRLVDWAGLVGNDHTSAFQLASFGSVVAESLGADGLASARPSAEAARAWLAERE-------------------------------------GEDAPGWLE---ARAEPLLARALRFSRALYELDHATLGLFP-------PDHSHSRAVPLELMPRK-GADLSSIGAA-ALSELADGGLGR-----VVARADG-RQPEPCELLPQHREALKRILRGERSAVTGSALPPKLCWEDVAVAQRYQALCKLLLRAGPLPAQSPVQLFDGPSFHAFAQ 331          
BLAST of mRNA_P-wetherbeei_contig836.2.1 vs. uniprot
Match: A0A0L0H4V5_SPIPD (Uncharacterized protein n=1 Tax=Spizellomyces punctatus (strain DAOM BR117) TaxID=645134 RepID=A0A0L0H4V5_SPIPD)

HSP 1 Score: 87.4 bits (215), Expect = 3.980e-14
Identity = 77/285 (27.02%), Postives = 117/285 (41.05%), Query Frame = 1
Query:  289 YFDGKQRRLKKATERHRAQQRQDQWAALQGW-CLDGATPPEYIGFPPPPLIIEE----LEAVLRD--------------------------------------LNVPVVDCPGEADQELAK-------------AAAADAAGNHFVLGGDSDFFLFKGCRFIPFETLQLGGNNENLDGGGDGS--------PRTPTA-QVWERARLAELCGVSETALVEWGLLLGNDYTAHLPLDSYAGLSGQARHTTGSLDRME------------ALDDLLRFLAERGDGYQL 912
            YFDG+  + K AT   R  Q++ +W+ L  + C   +TPP    FP PPLI E+    LEA+ R+                                        + +V C  EAD E+A+                A   G  +  G DSD+FL +GC +I F  +     +E      DGS        P    A +VW R  +A +  ++E+ LVE G+L+GNDYT      S + L  +  H   + +  E            A+++LL  + E G+G++L
Sbjct:  176 YFDGEMLQAKHATHEERVLQKEQRWSNLYRYFCGRTSTPPAQEVFPMPPLIFEQFLRTLEAITRENELEVDLADEFDRLTISQTAAGGTVEESVSPSSFACPTAKISIVQCKVEADIEIARDVELWNEQSSASSCGGASPPGRAYCYGEDSDYFLMRGCPYIRFGRI-----SERQPFNADGSNAVLVSHQPHHVVALEVWRREEVAAMLSLTESQLVELGILIGNDYTMEY---SRSDLKARKMHKNNTEEYAEVAVQVPDEHSNDAIEELLSIVREGGEGFKL 452          
BLAST of mRNA_P-wetherbeei_contig836.2.1 vs. uniprot
Match: A0A7S3JYC1_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3JYC1_9STRA)

HSP 1 Score: 79.7 bits (195), Expect = 8.660e-12
Identity = 76/281 (27.05%), Postives = 118/281 (41.99%), Query Frame = 1
Query:   55 MGIKRLKTFIDQRLSAANASRPLPEGASLLIDGNGWAFQLLRESGARMDLVGDYAALGQTARAAVTAMRDAGLQVGPVYFDGKQRR-LKKATERHRAQQRQDQWAALQGWC--------------------------LDGATPPEYIGFPPPPLIIEELEAVL------------RDLNVPVVDCPGEADQELAKAAAADAAGNHFVLGGDSDFFLFKGCRFIPFETLQLGGNNENLDGGGDGSPRTPTAQVWERARLA-ELCGVSETALVEWGLLLGNDY 777
            MG+K+L  ++ +    A   + +  G+ + IDG+G A  L+++   R DL GDY  L    +  +  + +       VY DGK RR +K  T   R  +R+++W AL+ W                            DG    +   FP P L++    A +                + +++C  EAD  LAK+A        +VL  DSDF +FK C++IP   L+   N E +              +W R   + EL    E   +E+ LLLGNDY
Sbjct:    1 MGVKKLYNYLLRNRGGAPEKKTIDIGSEIGIDGSGLAHYLVKDD--RNDLGGDYMRLEALVQMTLKDLIEEQKLKVTVYKDGKLRRSVKTRTMNQRLIERKNEWFALEEWANKDSFFSSSPTKKESTQQEENDIIPYSDGVASCQ---FPRPVLLMSVFYAAVVKYKDTLCDEEEEQSRLEIIECEEEADVILAKSAK-------YVLAEDSDFLVFKNCKYIPLHELEKLCNGEPVC-------------IWTRRNTSRELHLPDEQRFIEFALLLGNDY 256          
BLAST of mRNA_P-wetherbeei_contig836.2.1 vs. uniprot
Match: A0A8H7VS84_9FUNG (Uncharacterized protein n=1 Tax=Thamnidium elegans TaxID=101142 RepID=A0A8H7VS84_9FUNG)

HSP 1 Score: 70.5 bits (171), Expect = 5.100e-9
Identity = 65/229 (28.38%), Postives = 104/229 (45.41%), Query Frame = 1
Query:  142 LIDGNGWAFQLLRESGARMDLVGDYAALGQTARAAVTAMRDAGLQVGPVYFDGK--QRRLKKATERHRAQQRQD---QWAALQGWCLDGATPPE--------YIG--FPPPPLIIEELEAVLRDLNVPVVDCPGEADQELAKAAAADAAGNHFVLGGDSDFFLFK--GCRFIPFETLQLGGNNENLDGGGDGSPRTPTAQVWERARLAELCGVSETALVEWGLLLGNDY 777
            + DGN + + +  E+       G YA + +     V  +R AG+Q+    FDG   Q +++   +RH++   +     W   Q   ++ +   E        Y G  F  PP+ +E +   LR+L+V V  C GEAD E+ + AA     N +V+  DSD  ++   G  +IPFE L +    EN+  G           V+   +L  L  +  + L  +G LLGNDY
Sbjct:   36 IFDGNAFVYHIAYENRTDWTHGGQYATIAKVVEDLVETLRKAGIQM-TFLFDGSLPQDKMETRIKRHKSYIERSISTYWNLKQ---INASNKNEEQRQNGIQYYGDLFLIPPMTLEVIIQTLRELDVEVKICQGEADSEVVELAAEK---NGYVVSQDSDMHVYPNIGKGYIPFELLNIPTQGENISAG-----------VFHPKKLTSLLNLKPSLLPLFGTLLGNDY 246          
BLAST of mRNA_P-wetherbeei_contig836.2.1 vs. uniprot
Match: UPI000B8FA685 (protein asteroid homolog 1-like n=1 Tax=Acanthochromis polyacanthus TaxID=80966 RepID=UPI000B8FA685)

HSP 1 Score: 62.4 bits (150), Expect = 6.770e-7
Identity = 70/247 (28.34%), Postives = 109/247 (44.13%), Query Frame = 1
Query:   55 MGIKRLKTFIDQRLSAANASRPLPEGASLLIDGNGWAFQLLRESGARMDLVGDYAALGQTARAAVTAMRDAGLQVGP-VYFDG----KQRRLKKATERHRAQQRQDQWAALQGWCLDGATPPEYIGFPPPPLIIEELEAVLRDLNVPVVDCPGEADQELAKAAAADAAGNHFVLGGDSDFFLFK-GCRFIPFETLQLGGNNENLDGGGDGSPRTPTAQVWERARLAELCGVSETALVEWGLLLGNDY 777
            MG++ L TF+D   S             L++DG+     L   SG   +  G+YAA        + A+R    +V P V  DG      ++L+  T+R  +Q ++   AA+ G   +            PPL     +  L  L VPV  C GEADQE+A  A+     N  VL GDSDF++F      +PF   Q    +E  DG      ++ + + +  +R  ++  + +  L  + +L GNDY
Sbjct:    1 MGVEGLDTFLDDHRSVYRDVEFRMN--RLVVDGSNLIQLLYYNSGLDQNHGGEYAAFEALIERFIAALRTC--EVTPYVVLDGGSDLTDKKLETVTKRIESQIKKAHQAAVSGGAKNIL----------PPLAKLVFKQTLARLEVPVAQCFGEADQEIAALASE---WNCPVLSGDSDFYIFDLPAGLLPFCYFQW--EDEEQDGS-----QSISCKTYHISRFCDVFKIQQKLLPTFAVLGGNDY 223          
BLAST of mRNA_P-wetherbeei_contig836.2.1 vs. uniprot
Match: A0A3Q1EXQ7_9TELE (Protein asteroid homolog 1-like n=1 Tax=Acanthochromis polyacanthus TaxID=80966 RepID=A0A3Q1EXQ7_9TELE)

HSP 1 Score: 60.8 bits (146), Expect = 4.750e-6
Identity = 67/247 (27.13%), Postives = 106/247 (42.91%), Query Frame = 1
Query:   55 MGIKRLKTFIDQRLSAANASRPLPEGASLLIDGNGWAFQLLRESGARMDLVGDYAALGQTARAAVTAMRDAGLQVGP-VYFDG----KQRRLKKATERHRAQQRQDQWAALQGWCLDGATPPEYIGFPPPPLIIEELEAVLRDLNVPVVDCPGEADQELAKAAAADAAGNHFVLGGDSDFFLFK-GCRFIPFETLQLGGNNENLDGGGDGSPRTPTAQVWERARLAELCGVSETALVEWGLLLGNDY 777
            MG++ L T +D         +     + L++DG    + L   SG   +  G+YAA        + A+R    +V P V  DG      ++L+  T+R  +Q ++   AA+ G   +            PPL     +  L  L VPV  C GEADQE+A  A+     N  VL GDSDF++F      +PF   +     +      DGS    + + +  +R   +  + +  L  + +L GNDY
Sbjct:    1 MGVQGLATLLDNNQGVYKDVKF--RKSKLVVDGTNLIYLLYYNSGLDQNHGGEYAAFEALIERFIAALRTC--EVTPYVVLDGGSDLTDKKLETVTKRIESQIKKAHQAAVSGGAKNIL----------PPLAKLVFKQTLARLEVPVAQCFGEADQEIAALASE---WNCPVLSGDSDFYIFDLPAGLLPFCYFRWKNVKQ------DGSQSFISCKTYHISRFCNVFKIQQKLLPTFAVLGGNDY 224          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig836.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 12
Match NameE-valueIdentityDescription
D8LSM0_ECTSI1.960e-4440.21Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6U4LS21_9STRA1.180e-4342.26Hypothetical protein (Fragment) n=1 Tax=Phaeomonas... [more]
A0A7S3HTM6_9STRA2.380e-3532.05Hypothetical protein (Fragment) n=1 Tax=Spumella e... [more]
A0A7S1XZQ7_9STRA1.240e-1744.44Hypothetical protein (Fragment) n=1 Tax=Phaeomonas... [more]
A0A7S3TKS1_EMIHU1.850e-1628.76Hypothetical protein (Fragment) n=1 Tax=Emiliania ... [more]
A0A0L0H4V5_SPIPD3.980e-1427.02Uncharacterized protein n=1 Tax=Spizellomyces punc... [more]
A0A7S3JYC1_9STRA8.660e-1227.05Hypothetical protein n=1 Tax=Aureoumbra lagunensis... [more]
A0A8H7VS84_9FUNG5.100e-928.38Uncharacterized protein n=1 Tax=Thamnidium elegans... [more]
UPI000B8FA6856.770e-728.34protein asteroid homolog 1-like n=1 Tax=Acanthochr... [more]
A0A3Q1EXQ7_9TELE4.750e-627.13Protein asteroid homolog 1-like n=1 Tax=Acanthochr... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig836contigP-wetherbeei_contig836:4831..7032 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D8LSM0
Preferred nameYTHDC2
PFAMsDEAD,HA2,Helicase_C,OB_NTP_bind,YTH
Model size1711
Max annot lvl2759|Eukaryota
KEGG koko:K14442,ko:K20099
KEGG Pathwayko03018,map03018
Hectar predicted targeting categorymitochondrion
Exons3
Evalue3.21e-45
EggNOG OGsCOG1643@1|root,KOG0921@2759|Eukaryota
EC3.6.4.13
Descriptionpositive regulation of polysome binding
Cds size1707
COG categoryL
BRITEko00000,ko00001,ko01000,ko03019,ko03041
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187035.6261477-CDS-P-wetherbeei_contig836:4830..48871683187035.6261477-CDS-P-wetherbeei_contig836:4830..4887Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig836 4831..4887 +
1683187035.6385517-CDS-P-wetherbeei_contig836:5153..54541683187035.6385517-CDS-P-wetherbeei_contig836:5153..5454Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig836 5154..5454 +
1683187035.6486285-CDS-P-wetherbeei_contig836:5681..70301683187035.6486285-CDS-P-wetherbeei_contig836:5681..7030Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig836 5682..7030 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig836.2.1prot_P-wetherbeei_contig836.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig836 4831..7030 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig836.2.1

>prot_P-wetherbeei_contig836.2.1 ID=prot_P-wetherbeei_contig836.2.1|Name=mRNA_P-wetherbeei_contig836.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=569bp
RKRTKQLLYFARYWERATMGIKRLKTFIDQRLSAANASRPLPEGASLLID
GNGWAFQLLRESGARMDLVGDYAALGQTARAAVTAMRDAGLQVGPVYFDG
KQRRLKKATERHRAQQRQDQWAALQGWCLDGATPPEYIGFPPPPLIIEEL
EAVLRDLNVPVVDCPGEADQELAKAAAADAAGNHFVLGGDSDFFLFKGCR
FIPFETLQLGGNNENLDGGGDGSPRTPTAQVWERARLAELCGVSETALVE
WGLLLGNDYTAHLPLDSYAGLSGQARHTTGSLDRMEALDDLLRFLAERGD
GYQLAPAAAAAGAAGAAAINPPVEECSDLGGSGASAGHGASGGKDDTPVA
AADYVALALAFSRALYELQPLEGFPVDSPGRSPDGSPPVSYPATATRLLL
GYEFVAMQAARAVCDAGDNDVDKYQAAALVAMASGARRPFPQEQRPDWED
VRVAWAYQKVLERFLSAMELPEAPSRCYDGATFHALAREERARAAVLGSA
PTWEAQAAPDGGTGGDGGGNDSDQELWFEDLMSQDEIGGRRGTGFLGVPG
GDAAALPSAGPRGSGSRGG
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mRNA from alignment at P-wetherbeei_contig836:4831..7032+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig836.2.1 ID=mRNA_P-wetherbeei_contig836.2.1|Name=mRNA_P-wetherbeei_contig836.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=2202bp|location=Sequence derived from alignment at P-wetherbeei_contig836:4831..7032+ (Phaeothamnion wetherbeei SAG_119_79)
CGAAAACGGACAAAACAGCTGCTCTACTTTGCGCGATATTGGGAAAGAGC CACCATGGTGAGACGCCAATCAGAAGCACCTCTCTCGTCCCTCTACTTGT ACCATAAGAATTTCTTCCAAAACTCTCCTCCCGAGGACAAGAGCTGTAAA CGTCAAAATAGTTTTTACTTACGACAGCGACCTAAAAGCGCATACATTGT GCCATACTTGCTCATTCCGGCTTCTTTCGCACCCTCCCGTCGAAACTCTG TCCCCCCTCGACACCCTCCCTTTACACTCCCACTTTCGCAACTCTCCCGA TATCACTTTGATGGAACGATTAGGGCATTAAGCGGCTAAAGACGTTTATT GATCAGCGGCTATCGGCCGCTAACGCCAGCCGGCCCTTGCCGGAGGGGGC ATCTTTGCTGATTGACGGAAATGGATGGGCGTTCCAGCTGCTGCGAGAGT CCGGGGCGCGCATGGACCTGGTGGGCGATTATGCTGCGCTGGGGCAAACT GCACGCGCGGCCGTCACCGCGATGCGAGACGCGGGTCTGCAAGTAGGGCC CGTCTATTTCGATGGCAAGCAGCGCCGCCTCAAGAAGGCAACCGAGCGGC ATCGGGCTCAGCAGCGGCAGGATCGTGAGTTTACAATCCATAATAAGGCG ACTGCATTCGCGTGTCCGTCTTACTTTCCATGATCATGATTTTCAGGGTC GAAAAATCCTGTGTCCCTTCTTGCGGTCGCCATGAGATAGATCTGGCTCT ATAAAGTTTTAGGTTGTTGCTGGTGTACAAAAGCCTGCAATCATACTTAT ACCAATTCCAATTCTATCAACGCGACTGGTCCGGCTCTCTTCCCACCGCA GAATGGGCGGCGCTTCAGGGCTGGTGCTTGGACGGTGCGACGCCGCCCGA ATACATCGGCTTTCCGCCGCCGCCGCTCATTATCGAGGAACTGGAGGCCG TGCTTCGGGACCTGAATGTTCCCGTCGTGGATTGCCCCGGCGAGGCGGAC CAGGAGCTGGCCAAAGCCGCCGCCGCAGACGCCGCCGGGAATCATTTTGT CCTCGGAGGGGATTCCGACTTTTTCCTCTTTAAGGGCTGCCGCTTCATCC CCTTCGAAACGCTGCAGCTCGGCGGGAACAATGAAAATTTAGACGGCGGC GGCGATGGTAGCCCCCGGACGCCGACGGCGCAAGTCTGGGAGCGGGCGCG GCTTGCGGAGCTCTGCGGCGTGAGCGAGACGGCGCTGGTGGAGTGGGGGC TGCTCCTCGGCAACGATTACACGGCCCACCTGCCGCTCGATTCGTACGCC GGGCTTTCGGGGCAGGCGCGGCACACCACGGGCAGCCTCGATCGCATGGA GGCGCTGGACGATCTGCTACGCTTCTTGGCGGAGCGCGGCGACGGCTACC AGCTGGCGCCGGCGGCGGCGGCGGCAGGAGCCGCAGGGGCGGCAGCCATC AATCCTCCTGTGGAGGAATGTTCCGACCTAGGCGGCAGTGGCGCTAGCGC CGGTCACGGCGCTAGCGGCGGCAAAGACGACACGCCGGTGGCGGCGGCGG ATTACGTGGCGCTGGCGCTGGCCTTCTCGCGCGCGCTGTACGAGCTGCAG CCGTTGGAGGGATTTCCGGTGGACTCGCCGGGACGTAGCCCGGACGGGTC GCCACCCGTCAGCTACCCAGCGACTGCCACCAGGCTGCTCCTCGGCTACG AATTCGTCGCAATGCAGGCGGCGCGCGCGGTCTGTGACGCCGGCGACAAC GACGTGGACAAATACCAGGCGGCGGCACTTGTCGCCATGGCCTCGGGCGC CCGCCGCCCGTTTCCGCAGGAGCAGCGGCCGGACTGGGAGGACGTTCGGG TGGCATGGGCCTACCAAAAGGTGCTGGAGCGCTTCCTAAGCGCGATGGAG TTGCCCGAGGCGCCGAGCCGGTGCTACGACGGTGCGACGTTCCACGCGCT GGCGCGCGAGGAGCGCGCGCGGGCGGCGGTGCTGGGATCGGCACCGACGT GGGAGGCTCAGGCGGCGCCCGACGGCGGCACCGGCGGCGACGGCGGTGGA AACGACTCGGACCAGGAGCTGTGGTTCGAGGACTTGATGAGCCAGGACGA GATTGGCGGGCGGCGTGGCACGGGCTTTCTGGGCGTGCCGGGCGGCGACG CCGCCGCGTTGCCGTCTGCCGGCCCTCGCGGCTCCGGCAGCCGCGGCGGG GG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig836:4831..7032+

>mRNA_P-wetherbeei_contig836.2.1 ID=mRNA_P-wetherbeei_contig836.2.1|Name=mRNA_P-wetherbeei_contig836.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1707bp|location=Sequence derived from alignment at P-wetherbeei_contig836:4831..7032+ (Phaeothamnion wetherbeei SAG_119_79)
CGAAAACGGACAAAACAGCTGCTCTACTTTGCGCGATATTGGGAAAGAGC
CACCATGGGCATTAAGCGGCTAAAGACGTTTATTGATCAGCGGCTATCGG
CCGCTAACGCCAGCCGGCCCTTGCCGGAGGGGGCATCTTTGCTGATTGAC
GGAAATGGATGGGCGTTCCAGCTGCTGCGAGAGTCCGGGGCGCGCATGGA
CCTGGTGGGCGATTATGCTGCGCTGGGGCAAACTGCACGCGCGGCCGTCA
CCGCGATGCGAGACGCGGGTCTGCAAGTAGGGCCCGTCTATTTCGATGGC
AAGCAGCGCCGCCTCAAGAAGGCAACCGAGCGGCATCGGGCTCAGCAGCG
GCAGGATCAATGGGCGGCGCTTCAGGGCTGGTGCTTGGACGGTGCGACGC
CGCCCGAATACATCGGCTTTCCGCCGCCGCCGCTCATTATCGAGGAACTG
GAGGCCGTGCTTCGGGACCTGAATGTTCCCGTCGTGGATTGCCCCGGCGA
GGCGGACCAGGAGCTGGCCAAAGCCGCCGCCGCAGACGCCGCCGGGAATC
ATTTTGTCCTCGGAGGGGATTCCGACTTTTTCCTCTTTAAGGGCTGCCGC
TTCATCCCCTTCGAAACGCTGCAGCTCGGCGGGAACAATGAAAATTTAGA
CGGCGGCGGCGATGGTAGCCCCCGGACGCCGACGGCGCAAGTCTGGGAGC
GGGCGCGGCTTGCGGAGCTCTGCGGCGTGAGCGAGACGGCGCTGGTGGAG
TGGGGGCTGCTCCTCGGCAACGATTACACGGCCCACCTGCCGCTCGATTC
GTACGCCGGGCTTTCGGGGCAGGCGCGGCACACCACGGGCAGCCTCGATC
GCATGGAGGCGCTGGACGATCTGCTACGCTTCTTGGCGGAGCGCGGCGAC
GGCTACCAGCTGGCGCCGGCGGCGGCGGCGGCAGGAGCCGCAGGGGCGGC
AGCCATCAATCCTCCTGTGGAGGAATGTTCCGACCTAGGCGGCAGTGGCG
CTAGCGCCGGTCACGGCGCTAGCGGCGGCAAAGACGACACGCCGGTGGCG
GCGGCGGATTACGTGGCGCTGGCGCTGGCCTTCTCGCGCGCGCTGTACGA
GCTGCAGCCGTTGGAGGGATTTCCGGTGGACTCGCCGGGACGTAGCCCGG
ACGGGTCGCCACCCGTCAGCTACCCAGCGACTGCCACCAGGCTGCTCCTC
GGCTACGAATTCGTCGCAATGCAGGCGGCGCGCGCGGTCTGTGACGCCGG
CGACAACGACGTGGACAAATACCAGGCGGCGGCACTTGTCGCCATGGCCT
CGGGCGCCCGCCGCCCGTTTCCGCAGGAGCAGCGGCCGGACTGGGAGGAC
GTTCGGGTGGCATGGGCCTACCAAAAGGTGCTGGAGCGCTTCCTAAGCGC
GATGGAGTTGCCCGAGGCGCCGAGCCGGTGCTACGACGGTGCGACGTTCC
ACGCGCTGGCGCGCGAGGAGCGCGCGCGGGCGGCGGTGCTGGGATCGGCA
CCGACGTGGGAGGCTCAGGCGGCGCCCGACGGCGGCACCGGCGGCGACGG
CGGTGGAAACGACTCGGACCAGGAGCTGTGGTTCGAGGACTTGATGAGCC
AGGACGAGATTGGCGGGCGGCGTGGCACGGGCTTTCTGGGCGTGCCGGGC
GGCGACGCCGCCGCGTTGCCGTCTGCCGGCCCTCGCGGCTCCGGCAGCCG
CGGCGGG
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