mRNA_P-wetherbeei_contig835.5.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig835.5.1
Unique NamemRNA_P-wetherbeei_contig835.5.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig835.5.1 vs. uniprot
Match: D7FMH0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMH0_ECTSI)

HSP 1 Score: 139 bits (350), Expect = 9.190e-35
Identity = 85/178 (47.75%), Postives = 108/178 (60.67%), Query Frame = 1 
Query:   25 ERARAEREQAEAALRPIRHPLQGKLEEALQRCPRLAPTRVRATNTSYWFHQRRLLGGARHAHRGAVPSTRPAVLGWEAFIYRMVQRSRDLVLVPTLCPAVTPGGRAVGGPVVTRGVALALADRAAAERDADPGAGRQPKPPGLAGERLLHSHFRVLVVSAAFRGRGNGERLAMVFDAL 558
            ER +AE  + EA L P+  P Q  L+  L+    L P  VR TN SYW+ QRRLLGGARH HRGAV    P    WEA +Y +  R  D  LVP L P      ++VG  + T+G ALA+A ++A ERDA+PGA R PKPPG+    +L +H  +LVVS AF G  + +RLA+VF  L
Sbjct:  493 ERIKAEARRGEALLEPLVCPRQQLLKNILETSETLQPLAVRLTNLSYWYQQRRLLGGARHMHRGAVFD--PRTKRWEASVYMLGDRPSDGKLVPILTPI-----KSVGTTISTKGQALAIAAKSAKERDANPGAVRGPKPPGMTQLTMLQTHISILVVSDAFTGLSHADRLALVFTTL 663
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BLAST of mRNA_P-wetherbeei_contig835.5.1 vs. uniprot
Match: A0A6H5KC52_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KC52_9PHAE)

HSP 1 Score: 109 bits (273), Expect = 1.970e-24
Identity = 65/130 (50.00%), Postives = 82/130 (63.08%), Query Frame = 1 
Query:  169 FHQRRLLGGARHAHRGAVPSTRPAVLGWEAFIYRMVQRSRDLVLVPTLCPAVTPGGRAVGGPVVTRGVALALADRAAAERDADPGAGRQPKPPGLAGERLLHSHFRVLVVSAAFRGRGNGERLAMVFDAL 558
            + QRRLLGGARH HRGAV    P    WEA +Y +  R  D  LVP L P      ++VG  V+T+G ALALA ++A ERDA+PGA R PKPP +    +L +H  +LVVS AF G  + +RLA+VF  L
Sbjct:  584 YQQRRLLGGARHMHRGAVFD--PRTKRWEASVYMLGDRPSDGKLVPILTPI-----KSVGTTVLTKGQALALAAKSAKERDANPGAVRGPKPPMMTQLTMLETHISILVVSDAFTGLSHADRLALVFTTL 706
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BLAST of mRNA_P-wetherbeei_contig835.5.1 vs. uniprot
Match: A0A7S3M436_9STRA (Hypothetical protein (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3M436_9STRA)

HSP 1 Score: 65.5 bits (158), Expect = 2.750e-9
Identity = 48/154 (31.17%), Postives = 75/154 (48.70%), Query Frame = 1 
Query:   97 LEEALQRCPRLAPTRVRATNTSYWFHQRRLLGGARHAHRGAVPSTRPAVLGWEAFIYRMVQRSRDLVLVPTLCPAVTPGGRAVGGPVVTRGVALALADRAAAERDADPGAGRQPKPPGLAGERLLHSHFRVLVVSAAFRGRGNGERLAMVFDAL 558
            L +AL     L P  V   N SYW++ R  +G  +HA    +      +  WE+FI++M  R  D+ + P          +++ G   T+  A   A+ AA ERDA+P A  +     L  +++L +HFR+LVVS  F      ER ++V+  L
Sbjct:   55 LVDALASSAELQPLHVDVRNDSYWYNMRARMGPKKHA--ALIVKHNDHIQRWESFIFKMKLREEDMEMAPK---------KSLVGNHKTKWAAYKAAEAAARERDANP-AKNKKLADILHPDKILSTHFRILVVSEKFHQMSLIERHSLVYQEL 196
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig835.5.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7FMH0_ECTSI9.190e-3547.75Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KC52_9PHAE1.970e-2450.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S3M436_9STRA2.750e-931.17Hypothetical protein (Fragment) n=1 Tax=Spumella e... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig835contigP-wetherbeei_contig835:6540..7097 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D7FMH0
PFAMsIQ
Model size558
Max annot lvl2759|Eukaryota
KEGG koko:K16743
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.51e-35
EggNOG OGs29C0P@1|root,2RJ48@2759|Eukaryota
DescriptionShort calmodulin-binding motif containing conserved Ile and Gln residues.
Cds size558
COG categoryS
BRITEko00000,ko03036
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187035.269364-CDS-P-wetherbeei_contig835:6539..70971683187035.269364-CDS-P-wetherbeei_contig835:6539..7097Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig835 6540..7097 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig835.5.1prot_P-wetherbeei_contig835.5.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig835 6540..7097 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig835.5.1

>prot_P-wetherbeei_contig835.5.1 ID=prot_P-wetherbeei_contig835.5.1|Name=mRNA_P-wetherbeei_contig835.5.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=186bp
ARQTARRTERARAEREQAEAALRPIRHPLQGKLEEALQRCPRLAPTRVRA
TNTSYWFHQRRLLGGARHAHRGAVPSTRPAVLGWEAFIYRMVQRSRDLVL
VPTLCPAVTPGGRAVGGPVVTRGVALALADRAAAERDADPGAGRQPKPPG
LAGERLLHSHFRVLVVSAAFRGRGNGERLAMVFDAL
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mRNA from alignment at P-wetherbeei_contig835:6540..7097+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig835.5.1 ID=mRNA_P-wetherbeei_contig835.5.1|Name=mRNA_P-wetherbeei_contig835.5.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=558bp|location=Sequence derived from alignment at P-wetherbeei_contig835:6540..7097+ (Phaeothamnion wetherbeei SAG_119_79)
GCCCGGCAGACGGCGCGCCGGACCGAGCGGGCGCGCGCCGAGCGGGAGCA
GGCGGAGGCGGCGCTGCGTCCCATCCGTCACCCGCTACAGGGGAAGCTGG
AGGAGGCCCTCCAGCGCTGCCCGCGGCTCGCGCCGACGCGAGTGCGGGCC
ACCAACACCAGCTACTGGTTCCACCAACGGCGGCTGCTCGGTGGCGCCCG
CCACGCGCACCGCGGCGCGGTGCCATCGACGCGCCCTGCCGTCCTCGGCT
GGGAGGCGTTCATCTACCGGATGGTGCAGCGCTCCCGCGATTTGGTCCTC
GTCCCGACGCTCTGTCCCGCTGTCACGCCCGGCGGCAGGGCTGTTGGCGG
GCCAGTTGTCACTCGCGGTGTCGCACTAGCCCTGGCAGACCGTGCCGCCG
CCGAAAGGGATGCAGACCCCGGTGCCGGGCGGCAACCGAAGCCGCCGGGG
TTGGCCGGGGAGCGGCTGTTGCACAGCCACTTCCGGGTCCTGGTGGTCAG
CGCAGCGTTCCGCGGGCGCGGGAACGGTGAACGGCTTGCGATGGTGTTCG
ACGCCCTC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig835:6540..7097+

>mRNA_P-wetherbeei_contig835.5.1 ID=mRNA_P-wetherbeei_contig835.5.1|Name=mRNA_P-wetherbeei_contig835.5.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=558bp|location=Sequence derived from alignment at P-wetherbeei_contig835:6540..7097+ (Phaeothamnion wetherbeei SAG_119_79)
GCCCGGCAGACGGCGCGCCGGACCGAGCGGGCGCGCGCCGAGCGGGAGCA
GGCGGAGGCGGCGCTGCGTCCCATCCGTCACCCGCTACAGGGGAAGCTGG
AGGAGGCCCTCCAGCGCTGCCCGCGGCTCGCGCCGACGCGAGTGCGGGCC
ACCAACACCAGCTACTGGTTCCACCAACGGCGGCTGCTCGGTGGCGCCCG
CCACGCGCACCGCGGCGCGGTGCCATCGACGCGCCCTGCCGTCCTCGGCT
GGGAGGCGTTCATCTACCGGATGGTGCAGCGCTCCCGCGATTTGGTCCTC
GTCCCGACGCTCTGTCCCGCTGTCACGCCCGGCGGCAGGGCTGTTGGCGG
GCCAGTTGTCACTCGCGGTGTCGCACTAGCCCTGGCAGACCGTGCCGCCG
CCGAAAGGGATGCAGACCCCGGTGCCGGGCGGCAACCGAAGCCGCCGGGG
TTGGCCGGGGAGCGGCTGTTGCACAGCCACTTCCGGGTCCTGGTGGTCAG
CGCAGCGTTCCGCGGGCGCGGGAACGGTGAACGGCTTGCGATGGTGTTCG
ACGCCCTC
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