mRNA_P-wetherbeei_contig835.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig835.2.1
Unique NamemRNA_P-wetherbeei_contig835.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig835.2.1 vs. uniprot
Match: A0A7S2W251_9STRA (Glycine--tRNA ligase n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2W251_9STRA)

HSP 1 Score: 370 bits (949), Expect = 3.180e-118
Identity = 182/276 (65.94%), Postives = 212/276 (76.81%), Query Frame = 1
Query:   19 EDIAQFLTNSEDLEFEEEIARNPYKLKAWWRYLQAKRGASRKARNILHERALHFLPRSYKLWRQYLGERVAAVADKSVDDPACQIVVNAFERALVHLHKMPRLWLDYTAFLARLQRGTATRRAYDRALQALAITQHHLVWPQYLEWVRAFGALETAVRVYRRYLMLDGARREEYVDYLESSGLWGEAARQLARCVNDDSFVSAAGHSKHQMWMRLCDICAQHPADVSGALKVDAIIRSGISRFTDEVGRLWAKLADYYIRLGQLERARDVYEEAIN 846
            EDI + L + E + +EEEI+RNP+ L +W RYL  K+ A  + R  L ERAL  LPRSYKLWRQYL ER A +  KSV D    I+VN +ERALVHLHKMPR+WLDY   L  LQRGT TRR +DRALQAL +TQH  +W  YL+WV+ F   ETAV++YRRYLM D   REE+VDYL S G + EAA+QLA CVNDD+FVS  GHSKHQMWMRLCD+CA+HP +V G LKVDAIIRSG++RFTDEVGRLW KLADYYIRLGQ ERARDV+EE IN
Sbjct:    1 EDITRILEDEEAIRYEEEISRNPFILNSWLRYLDFKKRARPRERFFLFERALRCLPRSYKLWRQYLQERQAQIKGKSVTDKRNTILVNTYERALVHLHKMPRIWLDYCELLMNLQRGTRTRRTFDRALQALPVTQHDRIWSLYLQWVQDFAVKETAVKIYRRYLMYDPQHREEFVDYLVSVGHYDEAAQQLAECVNDDNFVSPGGHSKHQMWMRLCDMCAKHPEEV-GTLKVDAIIRSGLARFTDEVGRLWCKLADYYIRLGQFERARDVFEEGIN 275          
BLAST of mRNA_P-wetherbeei_contig835.2.1 vs. uniprot
Match: K8YQA2_NANGC (Pre-mRNA-splicing factor SYF1 n=3 Tax=Monodopsidaceae TaxID=425072 RepID=K8YQA2_NANGC)

HSP 1 Score: 327 bits (837), Expect = 2.120e-101
Identity = 162/279 (58.06%), Postives = 200/279 (71.68%), Query Frame = 1
Query:   13 LGEDIAQFLTNSEDLEFEEEIARNPYKLKAWWRYLQAKRGASRKARNILHERALHFLPRSYKLWRQYLGERVAAVADK-SVDDPACQIVVNAFERALVHLHKMPRLWLDYTAFLARLQRGTATRRAYDRALQALAITQHHLVWPQYLEWVRAFGALETAVRVYRRYLMLDGARREEYVDYLESSGLWGEAARQLARCVNDDSFVSAAGHSKHQMWMRLCDICAQHPADVSGALKVDAIIRSGISRFTDEVGRLWAKLADYYIRLGQLERARDVYEEAIN 846
            + ++I   L + +D EFEEEIARNP+ LK+W RYL AK  A    R +++ERAL FLP SYKLW  YL ER   V  +  V  P  QI++N FERALVHL +MPR+WLDY   L  +++ T TRRA+D ALQ+L ITQH  +W  YL W +  G  ETA+RV+RRYL  D ++RE YVD++E  G   EAA  LA CVNDD+F S  G SKH +WMRLCD+CA+HP  +S  LKVDAIIRSG++RFTDE G+LW KLADYYIR GQ ERARDVYEEA++
Sbjct:   15 VSDEIRALLEDEQDAEFEEEIARNPFSLKSWLRYLNAKTQAKPVKRYLIYERALKFLPGSYKLWWAYLQERKEQVDGRVPVSHPRYQILLNTFERALVHLSRMPRVWLDYLHTLVDMKKATKTRRAFDAALQSLPITQHERIWSLYLPWAQNLGVKETAIRVFRRYLKYDPSQRESYVDFMEKLGEMEEAAVHLAICVNDDAFFSPKGSSKHALWMRLCDMCARHPTAISRRLKVDAIIRSGLARFTDETGKLWCKLADYYIRQGQFERARDVYEEALS 293          
BLAST of mRNA_P-wetherbeei_contig835.2.1 vs. uniprot
Match: A0A7S3YB58_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3YB58_HETAK)

HSP 1 Score: 290 bits (743), Expect = 1.060e-95
Identity = 137/216 (63.43%), Postives = 162/216 (75.00%), Query Frame = 1
Query:   22 DIAQFLTNSEDLEFEEEIARNPYKLKAWWRYLQAKRGASRKARNILHERALHFLPRSYKLWRQYLGERVAAVADKSVDDPACQIVVNAFERALVHLHKMPRLWLDYTAFLARLQRGTATRRAYDRALQALAITQHHLVWPQYLEWVRAFGALETAVRVYRRYLMLDGARREEYVDYLESSGLWGEAARQLARCVNDDSFVSAAGHSKHQMWMRLCD 669
            DI  FL +  D E+EEEI+RNPY LK+WWRYL  K+ A  K R +++ERAL FLP S+KLW  YL ER  AV DKSV DPA ++V NA+ERALV LHKMPR+WLDY A L   QRGT  RRA+DRAL+AL +TQHHLVW  YL W + FG+ E+ +RVYRR+LM D   RE+YVDYL S G WGEAA QLARCVNDD FV   G +KH++WMRLCD
Sbjct:   26 DIKSFLESEADFEYEEEISRNPYALKSWWRYLDHKKNARPKTRYVVYERALKFLPGSFKLWHSYLKERTLAVEDKSVLDPAREVVANAYERALVTLHKMPRVWLDYCALLVAAQRGTRARRAFDRALRALPVTQHHLVWEHYLAWAQGFGSPESCIRVYRRFLMYDPQGREDYVDYLASIGEWGEAAAQLARCVNDDEFVGTKGTTKHKLWMRLCD 241          
BLAST of mRNA_P-wetherbeei_contig835.2.1 vs. uniprot
Match: K1Q7X3_CRAGI (Pre-mRNA-splicing factor SYF1 n=3 Tax=Crassostrea TaxID=6564 RepID=K1Q7X3_CRAGI)

HSP 1 Score: 302 bits (773), Expect = 4.140e-93
Identity = 148/265 (55.85%), Postives = 190/265 (71.70%), Query Frame = 1
Query:   49 EDLEFEEEIARNPYKLKAWWRYLQAKRGASRKARNILHERALHFLPRSYKLWRQYLGERVAAVADKSVDDPACQIVVNAFERALVHLHKMPRLWLDYTAFLARLQRGTATRRAYDRALQALAITQHHLVWPQYLEWVRAFGALETAVRVYRRYLMLDGARREEYVDYLESSGLWGEAARQLARCVNDDSFVSAAGHSKHQMWMRLCDICAQHPADVSGALKVDAIIRSGISRFTDEVGRLWAKLADYYIRLGQLERARDVYEEAI 843
            +DL FEEEI RNPY +K+W RYL+ K+ A R   N+++ERAL  LP SYKLW  YL  R   V  + ++DPA + V+NA ERALV +HKMPR+W+DY  FL    R T TRR +DRAL+AL ITQHH +WP+YL++VR +   ETA+RVYRR+L L     EEY+DYL   G   EAA +L   +NDDSFVS AG SKHQ+W  LCD+ A++P  V+ +LK++ IIR G+ R+TD++G LW  +ADYYIR G  ERARD+YEEAI
Sbjct:   20 DDLPFEEEILRNPYSVKSWLRYLEYKKEAPRSTVNLIYERALKELPGSYKLWYNYLKLRRRQVKGRCLNDPAIEDVINAHERALVFMHKMPRIWIDYCQFLVDYSRITKTRRTFDRALRALPITQHHRIWPRYLKFVRLYDLPETAIRVYRRHLKLQKENTEEYIDYLMKIGWLDEAANKLVDIINDDSFVSRAGKSKHQLWNELCDLVAKNPDKVT-SLKIEPIIRQGLKRYTDQIGVLWNSMADYYIRGGHFERARDIYEEAI 283          
BLAST of mRNA_P-wetherbeei_contig835.2.1 vs. uniprot
Match: UPI000154AAA9 (XPA binding protein 2, isoform CRA_c n=2 Tax=Boreoeutheria TaxID=1437010 RepID=UPI000154AAA9)

HSP 1 Score: 287 bits (734), Expect = 2.620e-92
Identity = 148/265 (55.85%), Postives = 185/265 (69.81%), Query Frame = 1
Query:   49 EDLEFEEEIARNPYKLKAWWRYLQAKRGASRKARNILHERALHFLPRSYKLWRQYLGERVAAVADKSVDDPACQIVVNAFERALVHLHKMPRLWLDYTAFLARLQRGTATRRAYDRALQALAITQHHLVWPQYLEWVRAFGALETAVRVYRRYLMLDGARREEYVDYLESSGLWGEAARQLARCVNDDSFVSAAGHSKHQMWMRLCDICAQHPADVSGALKVDAIIRSGISRFTDEVGRLWAKLADYYIRLGQLERARDVYEEAI 843
            EDL +EEEI RN + +K W RY++ K+GA +   N L+ERAL  LP SYKLW +YL  R A V  + V DPA + V N  ERA V +HKMPRLWLDY  FL    R T TRR +DRAL+AL ITQH  +WP YL ++R+    ETAVR YRR+L L     EEY++YL+SS    EAA++LA  VND+ FVS AG S +Q+W  LCD+ +Q+P  V  +L VDAIIR G++RFTD++G+LW  LADYYIR G  E+ARDVYEEAI
Sbjct:   20 EDLPYEEEIMRNQFSVKCWLRYIEFKQGAPKPRLNQLYERALKLLPCSYKLWYRYLKARRAQVKHRCVTDPAYEDVNNCHERAFVFMHKMPRLWLDYCQFLMDQGRVTHTRRTFDRALRALPITQHSRIWPLYLRFLRSHPLPETAVRGYRRFLKLSPESAEEYIEYLKSSDRLDEAAQRLATVVNDERFVSKAGKSNYQLWHELCDLISQNPDKVQ-SLNVDAIIRGGLTRFTDQLGKLWCSLADYYIRSGHFEKARDVYEEAI 283          
BLAST of mRNA_P-wetherbeei_contig835.2.1 vs. uniprot
Match: A0A139WI48_TRICA (Pre-mRNA-splicing factor SYF1-like Protein n=1 Tax=Tribolium castaneum TaxID=7070 RepID=A0A139WI48_TRICA)

HSP 1 Score: 286 bits (732), Expect = 3.860e-92
Identity = 141/271 (52.03%), Postives = 188/271 (69.37%), Query Frame = 1
Query:   31 QFLTNSEDLEFEEEIARNPYKLKAWWRYLQAKRGASRKARNILHERALHFLPRSYKLWRQYLGERVAAVADKSVDDPACQIVVNAFERALVHLHKMPRLWLDYTAFLARLQRGTATRRAYDRALQALAITQHHLVWPQYLEWVRAFGALETAVRVYRRYLMLDGARREEYVDYLESSGLWGEAARQLARCVNDDSFVSAAGHSKHQMWMRLCDICAQHPADVSGALKVDAIIRSGISRFTDEVGRLWAKLADYYIRLGQLERARDVYEEAI 843
            + +   EDL +EEEI RNPY +K W RY++ K+ A +   NI++ERAL  LP SYKLW  YL  R   V ++ + DPA + V NAFER+LV +HKMPR+W+DY +FL    + T TR+ +DRAL+AL +TQHH +WP YL +V+     ETAVR++RRYL L     EEYV+YL   G   EAA  LA+ VND++FVS  G SKHQ+W  LC++ +++P +V  +L VDAIIR G+ R+TD++G LW  LA YY+R G  ERARD+YEEAI
Sbjct:   15 EIIFTDEDLPYEEEILRNPYSVKHWLRYIEHKKKAPKHGVNIIYERALKELPGSYKLWYNYLRTRRLQVKNRCITDPAFEEVNNAFERSLVFMHKMPRIWMDYCSFLTDQCKITRTRKVFDRALRALPVTQHHRIWPLYLTFVKKHDISETAVRIFRRYLKLSPENAEEYVEYLTEVGRLDEAAVVLAKIVNDENFVSQHGKSKHQLWNELCELISKNPEEVH-SLNVDAIIRGGLRRYTDQLGHLWNSLATYYVRSGLFERARDIYEEAI 284          
BLAST of mRNA_P-wetherbeei_contig835.2.1 vs. uniprot
Match: A0A7S0HW82_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Phaeocystis antarctica TaxID=33657 RepID=A0A7S0HW82_9EUKA)

HSP 1 Score: 283 bits (725), Expect = 1.140e-91
Identity = 140/270 (51.85%), Postives = 185/270 (68.52%), Query Frame = 1
Query:   37 LTNSEDLEFEEEIARNPYKLKAWWRYLQAKRGASRKARNILHERALHFLPRSYKLWRQYLGERVAAVADKSVDDPACQIVVNAFERALVHLHKMPRLWLDYTAFLARLQRGTATRRAYDRALQALAITQHHLVWPQYLEWVRAFGALETAVRVYRRYLMLDGARREEYVDYLESSGLWGEAARQLARCVNDDSFVSAAGHSKHQMWMRLCDICAQHPADVSGALKVDAIIRSGISRFTDEVGRLWAKLADYYIRLGQLERARDVYEEAIN 846
            L +  DL +EE+I RN Y LK WWRY++AK+ A  K RN++ ERAL +LP SYK+W  YL +R   V  +  +DPA + +   +ERALV +HKMPR+WLDY  FL    R T TR+ +DRAL+AL ITQH  +W  ++++ +     ETAVRVYRRY+  +    EEYVD+L S G  GEAA +LA  +N +SFVS  G S+H++WM LCD+  +HP +V G L+V+AII SG+  FTDE G LW  LADY+IR  Q E+ARDVYEE I+
Sbjct:    9 LDDDTDLLYEEDILRNGYSLKYWWRYMEAKQRAPAKQRNMIAERALKYLPGSYKVWHHYLKDRRQQVLHRRPEDPAIENLNRTYERALVTMHKMPRIWLDYLEFLLGQHRTTVTRQKFDRALRALPITQHETIWKLFVQFAKECPIKETAVRVYRRYVQFEPEGAEEYVDFLLSIGRVGEAALKLAELLNRESFVSMRGKSRHKLWMELCDLVCKHPQEVKG-LRVEAIIHSGLRTFTDEAGHLWGALADYFIRQAQFEQARDVYEEGIS 277          
BLAST of mRNA_P-wetherbeei_contig835.2.1 vs. uniprot
Match: A0A673G278_9TELE (XPA binding protein 2 n=1 Tax=Sinocyclocheilus rhinocerous TaxID=307959 RepID=A0A673G278_9TELE)

HSP 1 Score: 289 bits (739), Expect = 1.590e-91
Identity = 149/280 (53.21%), Postives = 189/280 (67.50%), Query Frame = 1
Query:    4 IPTLGEDIAQFLTNSEDLEFEEEIARNPYKLKAWWRYLQAKRGASRKARNILHERALHFLPRSYKLWRQYLGERVAAVADKSVDDPACQIVVNAFERALVHLHKMPRLWLDYTAFLARLQRGTATRRAYDRALQALAITQHHLVWPQYLEWVRAFGALETAVRVYRRYLMLDGARREEYVDYLESSGLWGEAARQLARCVNDDSFVSAAGHSKHQMWMRLCDICAQHPADVSGALKVDAIIRSGISRFTDEVGRLWAKLADYYIRLGQLERARDVYEEAI 843
            +PTL    A  L   +DL +EEEI RNPY +K W RY++ K+ A +   N+++ERAL  LP SYKLW  YL ER   V  K V DPA + V N  ERALV +HKMPR+W+DY   +    + T +RR +DRAL+AL ITQH  +WP YL + R     ETA+RVYRRYL L     EEY+DYL S G   EAA +LA  VND++FVS  G S +Q+W  LCD+ +Q+P  V+ +LKV AIIR G++RFTD++G+LW  LADYYIR G  E+ARDVYEEAI
Sbjct:    1 MPTLSGK-ADVLFEDDDLPYEEEIIRNPYSVKCWMRYIEHKQNAQKSVLNMIYERALKELPGSYKLWYNYLRERRKQVKGKCVTDPAYEEVNNCHERALVFMHKMPRIWIDYCQLMVSQCKITRSRRTFDRALRALPITQHPRIWPLYLRFARNLPLPETAIRVYRRYLKLSPENAEEYIDYLRSVGRLDEAAIRLAAVVNDENFVSKEGKSNYQLWHELCDLISQNPDKVT-SLKVGAIIRGGLTRFTDQLGKLWCSLADYYIRSGHFEKARDVYEEAI 278          
BLAST of mRNA_P-wetherbeei_contig835.2.1 vs. uniprot
Match: K7FDD3_PELSI (XPA binding protein 2 n=1 Tax=Pelodiscus sinensis TaxID=13735 RepID=K7FDD3_PELSI)

HSP 1 Score: 291 bits (744), Expect = 4.440e-91
Identity = 147/265 (55.47%), Postives = 186/265 (70.19%), Query Frame = 1
Query:   49 EDLEFEEEIARNPYKLKAWWRYLQAKRGASRKARNILHERALHFLPRSYKLWRQYLGERVAAVADKSVDDPACQIVVNAFERALVHLHKMPRLWLDYTAFLARLQRGTATRRAYDRALQALAITQHHLVWPQYLEWVRAFGALETAVRVYRRYLMLDGARREEYVDYLESSGLWGEAARQLARCVNDDSFVSAAGHSKHQMWMRLCDICAQHPADVSGALKVDAIIRSGISRFTDEVGRLWAKLADYYIRLGQLERARDVYEEAI 843
            EDL++EEEI RNP+ +K W RY++ K+ A R+  N+++ERAL  LP SYKLW  YL +R   V ++ V DP  + V N  ERALV +HKMPR+WLDY  FL    R T TRR +DRAL+AL ITQHH +WP YL++VR +   ETAVRVYRRYL L     EEY++YL S     EAA +LA  VND+ FVS  G S +Q+W  LCD+ +Q+P  V  +L V AIIR G++RFTD++G+LW  LADYYIR G  E+ARDVYEEAI
Sbjct:   84 EDLQYEEEILRNPFSVKCWIRYIEFKQNAPRQVLNLIYERALKELPGSYKLWYNYLKQRRKQVKNRCVTDPGYEEVNNCHERALVFMHKMPRIWLDYCQFLMDQCRITRTRRTFDRALRALPITQHHRIWPLYLKFVRLYPLPETAVRVYRRYLKLSPENAEEYIEYLRSIDRLDEAALRLAVIVNDERFVSKEGKSNYQLWHELCDLISQNPDKVK-SLNVGAIIRGGLTRFTDQLGKLWCSLADYYIRSGHFEKARDVYEEAI 347          
BLAST of mRNA_P-wetherbeei_contig835.2.1 vs. uniprot
Match: D7G3C6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3C6_ECTSI)

HSP 1 Score: 287 bits (735), Expect = 5.510e-91
Identity = 154/279 (55.20%), Postives = 174/279 (62.37%), Query Frame = 1
Query:   10 TLGEDIAQFLTNSEDLEFEEEIARNPYKLKAWWRYLQAKRGASRKARNILHERALHFLPRSYKLWRQYLGERVAAVADKSVDDPACQIVVNAFERALVHLHKMPRLWLDYTAFLARLQRGTATRRAYDRALQALAITQHHLVWPQYLEWVRAFGALETAVRVYRRYLMLDGARREEYVDYLESSGLWGEAARQLARCVNDDSFVSAAGHSKHQMWMRLCDICAQHPADVSGALKVDAIIRSGISRFTDEVGRLWAKLADYYIRLGQLERARDVYEEAIN 846
            +LG+DI +FL N +D+EFEEEI+RNPY+LK+WWRYL AK GA RK RNI+HERAL FLP SYKLW QYL ER AAV  K + DPACQIVVNA ERAL+                                            WP YLEW + FG  ETAVRV+RRYLM D A RE+YVDYLE+ G W EAA+QL  CVND+ F+S                            +VDAIIRSG+SRFTDEVGRLW KLADYYIRLGQ ERARDVYEEAIN
Sbjct:   11 SLGQDIKEFLENEKDIEFEEEISRNPYRLKSWWRYLLAKEGAKRKTRNIIHERALKFLPNSYKLWNQYLRERRAAVEGKCITDPACQIVVNAHERALI--------------------------------------------WPPYLEWAKGFGVRETAVRVFRRYLMFDPAHREDYVDYLETEGQWEEAAKQLGICVNDEDFLSP---------------------------QVDAIIRSGLSRFTDEVGRLWCKLADYYIRLGQFERARDVYEEAIN 218          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig835.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S2W251_9STRA3.180e-11865.94Glycine--tRNA ligase n=1 Tax=Rhizochromulina marin... [more]
K8YQA2_NANGC2.120e-10158.06Pre-mRNA-splicing factor SYF1 n=3 Tax=Monodopsidac... [more]
A0A7S3YB58_HETAK1.060e-9563.43Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
K1Q7X3_CRAGI4.140e-9355.85Pre-mRNA-splicing factor SYF1 n=3 Tax=Crassostrea ... [more]
UPI000154AAA92.620e-9255.85XPA binding protein 2, isoform CRA_c n=2 Tax=Boreo... [more]
A0A139WI48_TRICA3.860e-9252.03Pre-mRNA-splicing factor SYF1-like Protein n=1 Tax... [more]
A0A7S0HW82_9EUKA1.140e-9151.85Hypothetical protein (Fragment) n=1 Tax=Phaeocysti... [more]
A0A673G278_9TELE1.590e-9153.21XPA binding protein 2 n=1 Tax=Sinocyclocheilus rhi... [more]
K7FDD3_PELSI4.440e-9155.47XPA binding protein 2 n=1 Tax=Pelodiscus sinensis ... [more]
D7G3C6_ECTSI5.510e-9155.20Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig835contigP-wetherbeei_contig835:97..942 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog8496.XP_006265150.1
Preferred nameXAB2
PFAMsTPR_8
Model size846
Max annot lvl33208|Metazoa
KEGG koko:K12867
KEGG Pathwayko03040,map03040
KEGG ModuleM00355
Hectar predicted targeting categoryother localisation
GOsGO:0000349,GO:0000375,GO:0000377,GO:0000393,GO:0000398,GO:0000974,GO:0001655,GO:0001701,GO:0001709,GO:0001824,GO:0002009,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005681,GO:0005684,GO:0006139,GO:0006259,GO:0006281,GO:0006283,GO:0006289,GO:0006351,GO:0006396,GO:0006397,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0007275,GO:0007399,GO:0007417,GO:0007420,GO:0007442,GO:0007443,GO:0007507,GO:0007510,GO:0008150,GO:0008152,GO:0008380,GO:0009058,GO:0009059,GO:0009653,GO:0009790,GO:0009792,GO:0009888,GO:0009987,GO:0010002,GO:0010467,GO:0016043,GO:0016070,GO:0016071,GO:0018130,GO:0019438,GO:0021537,GO:0021543,GO:0021987,GO:0022607,GO:0022613,GO:0022618,GO:0030154,GO:0030900,GO:0031974,GO:0031981,GO:0032501,GO:0032502,GO:0032774,GO:0032991,GO:0033554,GO:0034622,GO:0034641,GO:0034645,GO:0034654,GO:0035051,GO:0035239,GO:0035295,GO:0042684,GO:0043009,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0045165,GO:0046483,GO:0048513,GO:0048546,GO:0048565,GO:0048598,GO:0048619,GO:0048729,GO:0048731,GO:0048856,GO:0048863,GO:0048869,GO:0050896,GO:0051716,GO:0055123,GO:0060322,GO:0060429,GO:0060562,GO:0060911,GO:0060913,GO:0061326,GO:0061333,GO:0061525,GO:0065003,GO:0070013,GO:0071007,GO:0071010,GO:0071012,GO:0071013,GO:0071014,GO:0071704,GO:0071826,GO:0071840,GO:0072001,GO:0072002,GO:0072359,GO:0090304,GO:0097659,GO:1901360,GO:1901362,GO:1901576,GO:1902494,GO:1990904
Exons1
Evalue2.3e-91
EggNOG OGsKOG2047@1|root,KOG2047@2759|Eukaryota,38FF1@33154|Opisthokonta,3BE39@33208|Metazoa,3CX5M@33213|Bilateria,489PS@7711|Chordata,48XF7@7742|Vertebrata
Descriptiongeneration of catalytic spliceosome for first transesterification step
Cds size846
COG categoryA
BRITEko00000,ko00001,ko00002,ko03019,ko03041
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187035.079968-CDS-P-wetherbeei_contig835:96..9421683187035.079968-CDS-P-wetherbeei_contig835:96..942Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig835 97..942 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig835.2.1prot_P-wetherbeei_contig835.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig835 97..942 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig835.2.1

>prot_P-wetherbeei_contig835.2.1 ID=prot_P-wetherbeei_contig835.2.1|Name=mRNA_P-wetherbeei_contig835.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=282bp
MIPTLGEDIAQFLTNSEDLEFEEEIARNPYKLKAWWRYLQAKRGASRKAR
NILHERALHFLPRSYKLWRQYLGERVAAVADKSVDDPACQIVVNAFERAL
VHLHKMPRLWLDYTAFLARLQRGTATRRAYDRALQALAITQHHLVWPQYL
EWVRAFGALETAVRVYRRYLMLDGARREEYVDYLESSGLWGEAARQLARC
VNDDSFVSAAGHSKHQMWMRLCDICAQHPADVSGALKVDAIIRSGISRFT
DEVGRLWAKLADYYIRLGQLERARDVYEEAIN
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mRNA from alignment at P-wetherbeei_contig835:97..942-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig835.2.1 ID=mRNA_P-wetherbeei_contig835.2.1|Name=mRNA_P-wetherbeei_contig835.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=846bp|location=Sequence derived from alignment at P-wetherbeei_contig835:97..942- (Phaeothamnion wetherbeei SAG_119_79)
ATGATACCCACTCTGGGCGAGGACATTGCACAGTTCCTCACTAACTCGGA GGATCTCGAGTTCGAGGAGGAGATTGCGCGGAATCCATACAAGCTGAAGG CATGGTGGCGATATCTGCAGGCAAAACGAGGGGCAAGCCGGAAGGCCCGC AACATCCTCCACGAGCGCGCGCTGCACTTCCTGCCGCGCAGCTACAAGCT CTGGAGGCAGTATCTCGGCGAGCGCGTGGCGGCCGTCGCCGACAAGAGCG TCGACGACCCGGCGTGCCAGATCGTGGTCAACGCCTTTGAGCGCGCCCTC GTGCACCTGCACAAGATGCCGCGCCTCTGGCTGGACTACACGGCCTTCCT CGCGCGCCTGCAGCGCGGCACCGCCACGCGCCGCGCCTACGACCGCGCGT TGCAGGCGCTCGCCATCACCCAGCACCACCTCGTCTGGCCGCAGTACCTC GAGTGGGTGCGCGCCTTTGGCGCCCTCGAGACCGCCGTGCGCGTATACCG CCGCTACCTGATGCTCGATGGCGCCCGCCGCGAGGAGTACGTCGACTACC TCGAATCCTCGGGCCTGTGGGGCGAGGCGGCGCGCCAGCTCGCCCGCTGC GTCAACGACGACTCCTTCGTCTCCGCCGCCGGCCACAGCAAACACCAGAT GTGGATGCGTCTCTGCGACATCTGCGCGCAGCACCCGGCCGACGTGTCGG GCGCGCTGAAAGTCGACGCCATCATCCGCAGCGGCATTTCGCGCTTCACT GACGAGGTCGGGCGGCTGTGGGCCAAGCTCGCCGACTACTACATCCGGCT CGGCCAGCTGGAGCGCGCGCGGGACGTTTACGAGGAGGCCATCAAC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig835:97..942-

>mRNA_P-wetherbeei_contig835.2.1 ID=mRNA_P-wetherbeei_contig835.2.1|Name=mRNA_P-wetherbeei_contig835.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=846bp|location=Sequence derived from alignment at P-wetherbeei_contig835:97..942- (Phaeothamnion wetherbeei SAG_119_79)
ATGATACCCACTCTGGGCGAGGACATTGCACAGTTCCTCACTAACTCGGA
GGATCTCGAGTTCGAGGAGGAGATTGCGCGGAATCCATACAAGCTGAAGG
CATGGTGGCGATATCTGCAGGCAAAACGAGGGGCAAGCCGGAAGGCCCGC
AACATCCTCCACGAGCGCGCGCTGCACTTCCTGCCGCGCAGCTACAAGCT
CTGGAGGCAGTATCTCGGCGAGCGCGTGGCGGCCGTCGCCGACAAGAGCG
TCGACGACCCGGCGTGCCAGATCGTGGTCAACGCCTTTGAGCGCGCCCTC
GTGCACCTGCACAAGATGCCGCGCCTCTGGCTGGACTACACGGCCTTCCT
CGCGCGCCTGCAGCGCGGCACCGCCACGCGCCGCGCCTACGACCGCGCGT
TGCAGGCGCTCGCCATCACCCAGCACCACCTCGTCTGGCCGCAGTACCTC
GAGTGGGTGCGCGCCTTTGGCGCCCTCGAGACCGCCGTGCGCGTATACCG
CCGCTACCTGATGCTCGATGGCGCCCGCCGCGAGGAGTACGTCGACTACC
TCGAATCCTCGGGCCTGTGGGGCGAGGCGGCGCGCCAGCTCGCCCGCTGC
GTCAACGACGACTCCTTCGTCTCCGCCGCCGGCCACAGCAAACACCAGAT
GTGGATGCGTCTCTGCGACATCTGCGCGCAGCACCCGGCCGACGTGTCGG
GCGCGCTGAAAGTCGACGCCATCATCCGCAGCGGCATTTCGCGCTTCACT
GACGAGGTCGGGCGGCTGTGGGCCAAGCTCGCCGACTACTACATCCGGCT
CGGCCAGCTGGAGCGCGCGCGGGACGTTTACGAGGAGGCCATCAAC
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