mRNA_P-wetherbeei_contig12965.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig12965.1.1
Unique NamemRNA_P-wetherbeei_contig12965.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig12965.1.1 vs. uniprot
Match: B5LWG3_9PHYC (Putative LamG-like jellyroll protein n=1 Tax=Feldmannia species virus TaxID=39420 RepID=B5LWG3_9PHYC)

HSP 1 Score: 105 bits (261), Expect = 6.180e-23
Identity = 73/208 (35.10%), Postives = 116/208 (55.77%), Query Frame = 1 
Query:    1 IQLSWDVMVGAAYYKVTYQAESGSELIALNNLVTPNGVITGLTPSTTYTLRVYSKTSRSAQYTEAYSEPATTPANSSANYDISVFEVSSGTYSTAQFTGATLVAIFNVIGNMLATGDTVVLNAYSGTSVHTLTSTIVKLGESVSVPAAGSILLPFTSTGGSSQTATLALSEST-VDVVYDNGSNTISIDGTTYSPGDVFVLDGKKVQV 621
            + LSW      + Y++T +  SG E+ +++   +   ++  LTPSTTYT R+Y  T     YT   SE  TT  ++ AN ++S+F +++G Y+ +Q    T   + N I  +L TGD+++++              V  G +  +P +  ILL F  + GSSQ+ATL LS++T V + YD+  N+I +DG T   G+ F+LDGKKV V
Sbjct:  215 VDLSWSPKSFTSSYRITQEVASGGEITSVDATTSTTSIVYNLTPSTTYTFRLYRSTD-DVNYTLDRSEDVTTLDDTPANSNMSIF-LTNGVYNFSQLEETTQEILKNHIDEILVTGDSIIID---NDEFDNQAFFAVARGTTSEIPDSKPILLLFNPSKGSSQSATLELSDATNVIITYDDSVNSIVVDGITRFVGETFILDGKKVSV 417
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BLAST of mRNA_P-wetherbeei_contig12965.1.1 vs. uniprot
Match: Q8QNC2_ESV1K (EsV-1-160 n=1 Tax=Ectocarpus siliculosus virus 1 (isolate New Zealand/Kaikoura/1988) TaxID=654926 RepID=Q8QNC2_ESV1K)

HSP 1 Score: 80.9 bits (198), Expect = 4.490e-14
Identity = 68/212 (32.08%), Postives = 112/212 (52.83%), Query Frame = 1 
Query:    1 IQLSWDVMVGAAYYKVTYQAESGS--ELIALNNLVTPNGVITGLTPSTTYTLRVYSKTSRSAQYTEAYSEPATTPANSSANYDISVFEVSSGTYSTAQFTGATLVAIFNVIGNMLATGDTVVLNAYSGTSVHTLTSTIVKLGESVSVPAAGSILLPFTSTGGSSQTATLALSESTVDVVYDNGSNTI-SIDGTTYSPGDVFVLDGKKVQVLE 627
            + LS  V VGA   K+TYQ ESG+  E++A  N    + +++GL   TTYT+R+Y+      +YT    +  TT AN + NYD++ F  +SG Y  +    +    + + + ++ +TG +V        S  +  +T VK G  +SV    ++LLPF S+ G++Q+AT+ LS+                I G +++ G   +LDGKKV V++
Sbjct: 1003 VLLSSLVDVGAVN-KLTYQ-ESGTLNEVVAHENFTDTSKIVSGLKAETTYTIRLYTAAGLGLEYTLLGQDDCTTYANLAKNYDVADFVSASGAYDISDLDDS----VSSAMNDLFSTGASV--EVAINDSKKSRKTTFVKRGGVISVANEEALLLPFDSSSGATQSATITLSDXXXXXXXXXXXXXXXEIGGVSFTHGQSLILDGKKVTVVD 1206
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig12965.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
B5LWG3_9PHYC6.180e-2335.10Putative LamG-like jellyroll protein n=1 Tax=Feldm... [more]
Q8QNC2_ESV1K4.490e-1432.08EsV-1-160 n=1 Tax=Ectocarpus siliculosus virus 1 (... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig12965contigP-wetherbeei_contig12965:588..1229 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size642
Hectar predicted targeting categoryother localisation
Exons1
Ec32 ortholog descriptionEsV-1-159 galactose-binding domain-like protein
Ec32 orthologEc-00_006130.1
Cds size621
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185968.4255173-UTR-P-wetherbeei_contig12965:587..6081683185968.4255173-UTR-P-wetherbeei_contig12965:587..608Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig12965 588..608 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185968.4342775-CDS-P-wetherbeei_contig12965:608..12291683185968.4342775-CDS-P-wetherbeei_contig12965:608..1229Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig12965 609..1229 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig12965.1.1prot_P-wetherbeei_contig12965.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig12965 609..1229 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig12965.1.1

>prot_P-wetherbeei_contig12965.1.1 ID=prot_P-wetherbeei_contig12965.1.1|Name=mRNA_P-wetherbeei_contig12965.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=207bp
MVGAAYYKVTYQAESGSELIALNNLVTPNGVITGLTPSTTYTLRVYSKTS
RSAQYTEAYSEPATTPANSSANYDISVFEVSSGTYSTAQFTGATLVAIFN
VIGNMLATGDTVVLNAYSGTSVHTLTSTIVKLGESVSVPAAGSILLPFTS
TGGSSQTATLALSESTVDVVYDNGSNTISIDGTTYSPGDVFVLDGKKVQV
LETIVD*
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mRNA from alignment at P-wetherbeei_contig12965:588..1229+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig12965.1.1 ID=mRNA_P-wetherbeei_contig12965.1.1|Name=mRNA_P-wetherbeei_contig12965.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=642bp|location=Sequence derived from alignment at P-wetherbeei_contig12965:588..1229+ (Phaeothamnion wetherbeei SAG_119_79)
ATTCAGCTATCATGGGATGTAATGGTCGGTGCTGCGTATTACAAGGTTAC
ATATCAAGCTGAATCTGGATCAGAACTTATTGCACTTAATAACTTGGTTA
CACCAAATGGCGTCATCACAGGACTGACGCCATCAACTACCTATACGTTA
CGTGTATACTCTAAAACATCAAGAAGCGCGCAATACACAGAAGCATACTC
AGAGCCAGCTACAACACCCGCAAACTCCAGTGCAAATTATGACATATCTG
TGTTTGAAGTGTCTTCCGGTACATATTCAACTGCTCAGTTTACGGGAGCA
ACGTTGGTTGCAATTTTCAACGTAATTGGGAATATGTTGGCAACGGGGGA
TACAGTGGTTCTCAATGCGTACTCGGGAACTTCTGTCCACACCTTGACCT
CAACAATTGTAAAGCTTGGAGAATCTGTGTCTGTTCCCGCGGCAGGTTCC
ATACTTTTGCCGTTCACGAGTACGGGAGGCAGTTCACAGACCGCAACATT
GGCTCTATCTGAATCAACCGTTGATGTGGTTTATGACAACGGATCAAACA
CGATATCAATAGACGGTACGACGTATTCCCCTGGAGACGTGTTTGTATTG
GATGGCAAAAAGGTTCAAGTGTTAGAAACAATTGTAGATTAG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig12965:588..1229+

>mRNA_P-wetherbeei_contig12965.1.1 ID=mRNA_P-wetherbeei_contig12965.1.1|Name=mRNA_P-wetherbeei_contig12965.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=621bp|location=Sequence derived from alignment at P-wetherbeei_contig12965:588..1229+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGTCGGTGCTGCGTATTACAAGGTTACATATCAAGCTGAATCTGGATC
AGAACTTATTGCACTTAATAACTTGGTTACACCAAATGGCGTCATCACAG
GACTGACGCCATCAACTACCTATACGTTACGTGTATACTCTAAAACATCA
AGAAGCGCGCAATACACAGAAGCATACTCAGAGCCAGCTACAACACCCGC
AAACTCCAGTGCAAATTATGACATATCTGTGTTTGAAGTGTCTTCCGGTA
CATATTCAACTGCTCAGTTTACGGGAGCAACGTTGGTTGCAATTTTCAAC
GTAATTGGGAATATGTTGGCAACGGGGGATACAGTGGTTCTCAATGCGTA
CTCGGGAACTTCTGTCCACACCTTGACCTCAACAATTGTAAAGCTTGGAG
AATCTGTGTCTGTTCCCGCGGCAGGTTCCATACTTTTGCCGTTCACGAGT
ACGGGAGGCAGTTCACAGACCGCAACATTGGCTCTATCTGAATCAACCGT
TGATGTGGTTTATGACAACGGATCAAACACGATATCAATAGACGGTACGA
CGTATTCCCCTGGAGACGTGTTTGTATTGGATGGCAAAAAGGTTCAAGTG
TTAGAAACAATTGTAGATTAG
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