mRNA_P-wetherbeei_contig8279.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig8279.1.1
Unique NamemRNA_P-wetherbeei_contig8279.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig8279.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig8279contigP-wetherbeei_contig8279:740..2796 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D7FQN8
PFAMsGe1_WD40
Model size1754
Max annot lvl2759|Eukaryota
KEGG koko:K08592,ko:K12616
KEGG Pathwayko03018,map03018
Hectar predicted targeting categoryother localisation
Exons2
Evalue8.04e-14
EggNOG OGsKOG1916@1|root,KOG1916@2759|Eukaryota
EC3.4.22.68
Descriptiondeadenylation-independent decapping of nuclear-transcribed mRNA
Cds size1752
COG categoryO
BRITEko00000,ko00001,ko01000,ko01002,ko03019,ko04121
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187031.0484874-CDS-P-wetherbeei_contig8279:739..21561683187031.0484874-CDS-P-wetherbeei_contig8279:739..2156Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig8279 740..2156 -
1683187031.0713897-CDS-P-wetherbeei_contig8279:2461..27961683187031.0713897-CDS-P-wetherbeei_contig8279:2461..2796Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig8279 2462..2796 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig8279.1.1prot_P-wetherbeei_contig8279.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig8279 740..2796 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig8279.1.1

>prot_P-wetherbeei_contig8279.1.1 ID=prot_P-wetherbeei_contig8279.1.1|Name=mRNA_P-wetherbeei_contig8279.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=584bp
EERTLDLLTGAEQNTRLRLWRLHSPAGGAEATWEAALQQTMVLPRGDGGG
GGGKGGSRERVTLLELSVDGSYVFAADTGGLALCVLHARRRPSGGLRFDF
LKPYRLVSPILSFAATSAEAETPYGYLPDPSSGAAASPPREMQLLCLQTK
PVLIYRFPDEEAYPGETAVALRGYTDDGAEEGGAAWGATGSAAGMAATGA
GGAAVPAASAALEAAAALSSAATAKEEEGKPAAAGEAAGAAGSGDGGAAV
LEYWKAAGYNPDGTPWKGVDGSGGGGANGANGADSAGAGASVPAPVAAIV
PGATAGGAAAAEAGAGAGPAPSAFAPPMSLLTPEALAAMMPSASAAAAAA
APSVNGTPQQSLPAPRTPPLPPSGFVWPASVPSPSAPPASAVAMPAGPSS
PAVAGSGPEDAMRVGGAAALVESVLPLASSAGDASGGHTAVPAAIRSVSA
AVQPGDGGRGADDSAGGGGGGGSGGGLPPAAVPRSPATPTPPPASRAGSG
GSSRPAPSLRGPTSVMLPPGLRVDHETLDLQALLLGGPPLPPPPPAAVST
NSTVEASAATAAPAPATTLATTGAPASAMPAAAR
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mRNA from alignment at P-wetherbeei_contig8279:740..2796-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig8279.1.1 ID=mRNA_P-wetherbeei_contig8279.1.1|Name=mRNA_P-wetherbeei_contig8279.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=2057bp|location=Sequence derived from alignment at P-wetherbeei_contig8279:740..2796- (Phaeothamnion wetherbeei SAG_119_79)
GAGGAGCGCACGCTTGACCTGCTGACGGGCGCGGAGCAGAACACGCGGCT
GCGGCTGTGGCGGCTGCACAGCCCCGCCGGCGGCGCCGAGGCCACCTGGG
AGGCTGCGCTGCAGCAGACGATGGTCCTACCCCGCGGCGATGGCGGCGGC
GGCGGGGGCAAGGGCGGCAGCAGAGAGCGGGTGACGCTGCTTGAGCTGTC
TGTGGATGGCAGTTACGTCTTCGCGGCGGACACGGGCGGGCTGGCCCTGT
GCGTGCTGCACGCGCGCCGGCGGCCGTCGGGCGGCCTCCGTTTCGATTTC
CTCAAACCCTACCGCCTCGTCAGCCCCATCCTCAGGTAGGAGCGGTGCAC
ACGTCGGTTTTCCCTTTTTCGGAAGCTGCTTGCTGCAGGACGAAGGAAAT
GGTTTATTCTCGCTGAAAAATTACCTCGTTTAGGGTCTCACAGAAGCGTC
GCAGGAATCATCCCTGTGTAGCTGGGTTTCGGTTTCCGTTGCTGATTTCT
GTCCGCTTGGCAGACATTGATTAGAATGTGCGTTGCTTTTTCCGGCTCGA
CCGTGTCTCTTTTTCTCCAGTAACATACTCCCTTTCCATCATGGTACGCT
TCCATCGCAACGGCACTGGCACCAAATTCCAATCCTGCAGCTTCGCGGCG
ACGTCCGCCGAGGCGGAGACGCCCTACGGCTACCTCCCGGACCCTTCCTC
TGGCGCGGCCGCCTCGCCGCCTCGAGAGATGCAGCTGCTCTGCCTGCAGA
CGAAGCCGGTCCTCATCTACCGTTTCCCCGACGAAGAGGCGTACCCGGGC
GAGACGGCCGTAGCGCTGCGCGGCTACACGGACGATGGCGCCGAGGAGGG
CGGCGCGGCGTGGGGAGCGACAGGCAGCGCCGCAGGCATGGCGGCGACGG
GGGCGGGCGGCGCGGCCGTGCCGGCGGCATCGGCTGCCCTGGAGGCGGCG
GCGGCATTGTCGTCGGCTGCGACGGCCAAGGAGGAGGAAGGAAAGCCAGC
CGCGGCAGGAGAAGCGGCGGGCGCTGCTGGCAGCGGCGATGGCGGCGCTG
CGGTGCTCGAGTACTGGAAGGCTGCCGGCTACAATCCGGACGGCACGCCC
TGGAAGGGTGTTGATGGCAGCGGCGGTGGCGGTGCGAATGGGGCGAATGG
CGCGGACAGCGCCGGCGCAGGTGCATCGGTGCCCGCTCCCGTTGCCGCGA
TTGTGCCTGGGGCAACGGCGGGCGGGGCAGCCGCGGCCGAGGCGGGGGCC
GGCGCGGGGCCAGCACCGAGCGCTTTCGCGCCGCCAATGTCACTGCTGAC
CCCTGAGGCGCTGGCGGCGATGATGCCGTCGGCTTCTGCCGCTGCCGCTG
CCGCTGCACCTTCAGTAAACGGAACGCCACAACAGTCGCTACCGGCGCCG
CGGACGCCGCCGCTGCCGCCGTCGGGCTTCGTTTGGCCGGCGTCCGTCCC
GTCCCCGTCGGCGCCGCCCGCGTCGGCCGTGGCCATGCCGGCGGGTCCAT
CGTCGCCTGCCGTAGCTGGCTCGGGACCAGAGGATGCAATGCGAGTGGGA
GGAGCAGCGGCGCTCGTTGAGTCCGTGCTGCCGCTGGCATCGTCGGCGGG
AGACGCTAGCGGCGGCCACACGGCCGTCCCGGCTGCCATTCGGAGCGTTT
CTGCAGCGGTGCAGCCGGGTGACGGCGGGCGGGGTGCGGACGACAGCGCC
GGCGGGGGTGGCGGGGGCGGAAGCGGTGGAGGTCTGCCGCCTGCGGCTGT
GCCGCGGTCGCCGGCGACCCCGACGCCGCCACCCGCCTCGCGGGCCGGGT
CCGGCGGCTCGTCCCGTCCTGCGCCGTCGCTGCGGGGGCCGACTTCGGTG
ATGCTGCCACCGGGGCTCCGGGTCGACCATGAGACCCTGGATCTGCAGGC
GCTGCTGCTCGGAGGGCCGCCGCTGCCGCCGCCGCCGCCGGCAGCCGTGA
GCACCAATTCGACGGTGGAAGCTTCGGCGGCTACGGCGGCACCGGCGCCG
GCGACAACGCTGGCGACGACGGGAGCGCCGGCGTCGGCGATGCCGGCTGC
GGCGCGG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig8279:740..2796-

>mRNA_P-wetherbeei_contig8279.1.1 ID=mRNA_P-wetherbeei_contig8279.1.1|Name=mRNA_P-wetherbeei_contig8279.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1752bp|location=Sequence derived from alignment at P-wetherbeei_contig8279:740..2796- (Phaeothamnion wetherbeei SAG_119_79)
GAGGAGCGCACGCTTGACCTGCTGACGGGCGCGGAGCAGAACACGCGGCT
GCGGCTGTGGCGGCTGCACAGCCCCGCCGGCGGCGCCGAGGCCACCTGGG
AGGCTGCGCTGCAGCAGACGATGGTCCTACCCCGCGGCGATGGCGGCGGC
GGCGGGGGCAAGGGCGGCAGCAGAGAGCGGGTGACGCTGCTTGAGCTGTC
TGTGGATGGCAGTTACGTCTTCGCGGCGGACACGGGCGGGCTGGCCCTGT
GCGTGCTGCACGCGCGCCGGCGGCCGTCGGGCGGCCTCCGTTTCGATTTC
CTCAAACCCTACCGCCTCGTCAGCCCCATCCTCAGCTTCGCGGCGACGTC
CGCCGAGGCGGAGACGCCCTACGGCTACCTCCCGGACCCTTCCTCTGGCG
CGGCCGCCTCGCCGCCTCGAGAGATGCAGCTGCTCTGCCTGCAGACGAAG
CCGGTCCTCATCTACCGTTTCCCCGACGAAGAGGCGTACCCGGGCGAGAC
GGCCGTAGCGCTGCGCGGCTACACGGACGATGGCGCCGAGGAGGGCGGCG
CGGCGTGGGGAGCGACAGGCAGCGCCGCAGGCATGGCGGCGACGGGGGCG
GGCGGCGCGGCCGTGCCGGCGGCATCGGCTGCCCTGGAGGCGGCGGCGGC
ATTGTCGTCGGCTGCGACGGCCAAGGAGGAGGAAGGAAAGCCAGCCGCGG
CAGGAGAAGCGGCGGGCGCTGCTGGCAGCGGCGATGGCGGCGCTGCGGTG
CTCGAGTACTGGAAGGCTGCCGGCTACAATCCGGACGGCACGCCCTGGAA
GGGTGTTGATGGCAGCGGCGGTGGCGGTGCGAATGGGGCGAATGGCGCGG
ACAGCGCCGGCGCAGGTGCATCGGTGCCCGCTCCCGTTGCCGCGATTGTG
CCTGGGGCAACGGCGGGCGGGGCAGCCGCGGCCGAGGCGGGGGCCGGCGC
GGGGCCAGCACCGAGCGCTTTCGCGCCGCCAATGTCACTGCTGACCCCTG
AGGCGCTGGCGGCGATGATGCCGTCGGCTTCTGCCGCTGCCGCTGCCGCT
GCACCTTCAGTAAACGGAACGCCACAACAGTCGCTACCGGCGCCGCGGAC
GCCGCCGCTGCCGCCGTCGGGCTTCGTTTGGCCGGCGTCCGTCCCGTCCC
CGTCGGCGCCGCCCGCGTCGGCCGTGGCCATGCCGGCGGGTCCATCGTCG
CCTGCCGTAGCTGGCTCGGGACCAGAGGATGCAATGCGAGTGGGAGGAGC
AGCGGCGCTCGTTGAGTCCGTGCTGCCGCTGGCATCGTCGGCGGGAGACG
CTAGCGGCGGCCACACGGCCGTCCCGGCTGCCATTCGGAGCGTTTCTGCA
GCGGTGCAGCCGGGTGACGGCGGGCGGGGTGCGGACGACAGCGCCGGCGG
GGGTGGCGGGGGCGGAAGCGGTGGAGGTCTGCCGCCTGCGGCTGTGCCGC
GGTCGCCGGCGACCCCGACGCCGCCACCCGCCTCGCGGGCCGGGTCCGGC
GGCTCGTCCCGTCCTGCGCCGTCGCTGCGGGGGCCGACTTCGGTGATGCT
GCCACCGGGGCTCCGGGTCGACCATGAGACCCTGGATCTGCAGGCGCTGC
TGCTCGGAGGGCCGCCGCTGCCGCCGCCGCCGCCGGCAGCCGTGAGCACC
AATTCGACGGTGGAAGCTTCGGCGGCTACGGCGGCACCGGCGCCGGCGAC
AACGCTGGCGACGACGGGAGCGCCGGCGTCGGCGATGCCGGCTGCGGCGC
GG
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