mRNA_P-wetherbeei_contig827.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig827.1.1
Unique NamemRNA_P-wetherbeei_contig827.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
[Close]
BLAST of mRNA_P-wetherbeei_contig827.1.1 vs. uniprot
Match: D8LNE8_ECTSI (Ankyrin n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNE8_ECTSI)

HSP 1 Score: 143 bits (361), Expect = 1.310e-35
Identity = 90/216 (41.67%), Postives = 123/216 (56.94%), Query Frame = 1 
Query:   94 ALVLAQQPDVRAVESGTGWTALHVAAQVGNAAAAAALLARRASAYAVSAAGLTPLDVAVRGGQRECAELLARHMAAEPA---VSGGGGRRSCCEIWIGTAPAAYPSWAMDRGFDAVLTVADTGPGTMPPRLAWLADADDVRHLCIEVASPVLHDDPSETAWAPVALQLRVVLDFIDGAERDRRRLLVHCLAGRGAAVGIVAAHRLLRHGVHVEHTL 732
            AL +     ++A +   GWTALH AA VG       LL +RAS YA S  G TPLDVA R  Q +   LL   + AEPA   ++  G       IW G+  AA+P WA D+GF+ +L++ D  P     +L WL D  DVRHL +E  + V  +D S  AW  +A   RV++ F+  A R R+++LVHC  GR  +V ++ A+RLL+HGV V +TL
Sbjct:  388 ALFMDYSVALQATDVQWGWTALHCAAHVGMVKVVENLLGKRASPYAESKIGQTPLDVASRARQIKTTALLEAFLRAEPAHEVIAEAG-----ANIWQGSHAAAHPVWASDQGFECILSIVD--PRFPDKKLGWLEDDGDVRHLRVE--AEVDDEDTSPRAWNNIAQHTRVIISFLYTAVRRRKKILVHCRNGRSTSVAMLTAYRLLKHGVGVRNTL 594
[Close]
BLAST of mRNA_P-wetherbeei_contig827.1.1 vs. uniprot
Match: A0A836CC25_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CC25_9STRA)

HSP 1 Score: 120 bits (300), Expect = 2.930e-27
Identity = 94/234 (40.17%), Postives = 112/234 (47.86%), Query Frame = 1 
Query:   16 ARLDAVDAHLRTPLMHAVRCGDPATLALVLAQQPDVRAVESGTGWTALHVAAQVGNAAAAAALLARRASAYAVSAAGLTPLDVAVRGGQRECAELLARHMAAEPA----VSGGGGRRSCCEIWIGTAPAAYPSWAMDRGFDAVLTVADTGPGTMPPRLAWLADAD-DVRHLCIEVASPVLHDDPSETAWAPV---ALQLRVVLDFIDGAERDRRRLLVHCLAGRGAAVGIVAAH 693
            A L A+D   R  +  AV  G    LAL L     V   ++  GWT LH AA  G   A + LL+RRAS YA+S  G TPL VA    Q   A LL    A EPA    V       +  EIW+G+  AA   WA DRGF AVL+V D G       +AWLA+ D    HL IE             AW  V   A  L   + FID A R R R+L+HC  GR A  G+ AA+
Sbjct:  264 AALGALDRGRRGVVALAVMAGSMECLALALDNGASVHKKDAQWGWTPLHHAAHSGALQAISLLLSRRASIYALSDEGQTPLQVAEGAKQEAAARLLRARAADEPAHVVMVLD-----NSTEIWLGSCAAARAGWAQDRGFTAVLSVNDGGEEWSQRAVAWLAEPDCSTAHLLIEAPLGGAGGAKGGRAWGGVCGSAQGLASAVAFIDAARRRRARVLLHCSDGRCACAGVWAAY 492
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig827.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LNE8_ECTSI1.310e-3541.67Ankyrin n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
A0A836CC25_9STRA2.930e-2740.17Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig827contigP-wetherbeei_contig827:2..865 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D8LNE8
PFAMsAnk_2
Model size759
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons2
Evalue2.15e-36
EggNOG OGsCOG0666@1|root,KOG4177@2759|Eukaryota
Ec32 ortholog descriptionAnkyrin repeat-containing domain
Ec32 orthologEc-04_004120.1
Descriptionspectrin binding
Cds size759
COG categoryI
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187030.5343556-CDS-P-wetherbeei_contig827:1..3361683187030.5343556-CDS-P-wetherbeei_contig827:1..336Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig827 2..336 +
1683187030.5469196-CDS-P-wetherbeei_contig827:441..8651683187030.5469196-CDS-P-wetherbeei_contig827:441..865Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig827 442..865 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig827.1.1prot_P-wetherbeei_contig827.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig827 2..865 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig827.1.1

>prot_P-wetherbeei_contig827.1.1 ID=prot_P-wetherbeei_contig827.1.1|Name=mRNA_P-wetherbeei_contig827.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=253bp
LLVRGARLDAVDAHLRTPLMHAVRCGDPATLALVLAQQPDVRAVESGTGW
TALHVAAQVGNAAAAAALLARRASAYAVSAAGLTPLDVAVRGGQRECAEL
LARHMAAEPAVSGGGGRRSCCEIWIGTAPAAYPSWAMDRGFDAVLTVADT
GPGTMPPRLAWLADADDVRHLCIEVASPVLHDDPSETAWAPVALQLRVVL
DFIDGAERDRRRLLVHCLAGRGAAVGIVAAHRLLRHGVHVEHTLQRAREA
QPK
back to top

mRNA from alignment at P-wetherbeei_contig827:2..865+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig827.1.1 ID=mRNA_P-wetherbeei_contig827.1.1|Name=mRNA_P-wetherbeei_contig827.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=864bp|location=Sequence derived from alignment at P-wetherbeei_contig827:2..865+ (Phaeothamnion wetherbeei SAG_119_79)
CTCCTCGTCCGCGGCGCCCGCCTCGATGCCGTTGATGCCCATCTCCGCAC
GCCGCTAATGCACGCCGTGCGTTGCGGCGACCCAGCCACACTGGCGCTCG
TTCTGGCGCAGCAACCGGACGTCCGCGCCGTGGAGTCGGGCACCGGCTGG
ACGGCGCTGCATGTGGCGGCGCAGGTTGGCAATGCGGCGGCGGCGGCGGC
GCTGCTGGCGCGGCGCGCTAGCGCATACGCCGTGAGCGCCGCCGGGCTGA
CGCCGCTCGACGTGGCGGTCCGAGGCGGGCAGCGCGAGTGCGCCGAGCTG
CTGGCCCGACACATGGCGGCCGAGCCGGCGGTTAGGTTTGAGCACGGCGA
CAGCGCAGGCGGCGGTGGCGGCGGCGGCAATGGCGGCAGCAATGGCGCAA
GCAACAGCAGTAATGACAGTAGAAGCGACGGCGGGAGCAGTGGCGGTGGT
GGCCGGAGGAGCTGTTGCGAAATTTGGATCGGCACCGCCCCGGCGGCCTA
CCCATCGTGGGCGATGGACCGCGGCTTCGACGCCGTGCTGACGGTGGCGG
ACACGGGGCCCGGCACGATGCCGCCCCGGCTGGCGTGGCTCGCCGACGCC
GACGATGTCCGACACCTCTGCATCGAAGTTGCCTCCCCGGTGCTGCACGA
CGACCCGTCCGAGACCGCGTGGGCGCCCGTGGCCTTGCAGCTCCGGGTAG
TGCTGGACTTTATCGACGGCGCGGAGCGGGACCGGCGGCGGCTGCTGGTC
CACTGCCTCGCCGGGCGCGGGGCGGCCGTCGGCATCGTTGCGGCGCATCG
CCTGCTGCGGCACGGCGTACACGTCGAGCACACGTTGCAGCGGGCGCGAG
AGGCACAGCCGAAG
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig827:2..865+

>mRNA_P-wetherbeei_contig827.1.1 ID=mRNA_P-wetherbeei_contig827.1.1|Name=mRNA_P-wetherbeei_contig827.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=759bp|location=Sequence derived from alignment at P-wetherbeei_contig827:2..865+ (Phaeothamnion wetherbeei SAG_119_79)
CTCCTCGTCCGCGGCGCCCGCCTCGATGCCGTTGATGCCCATCTCCGCAC
GCCGCTAATGCACGCCGTGCGTTGCGGCGACCCAGCCACACTGGCGCTCG
TTCTGGCGCAGCAACCGGACGTCCGCGCCGTGGAGTCGGGCACCGGCTGG
ACGGCGCTGCATGTGGCGGCGCAGGTTGGCAATGCGGCGGCGGCGGCGGC
GCTGCTGGCGCGGCGCGCTAGCGCATACGCCGTGAGCGCCGCCGGGCTGA
CGCCGCTCGACGTGGCGGTCCGAGGCGGGCAGCGCGAGTGCGCCGAGCTG
CTGGCCCGACACATGGCGGCCGAGCCGGCGGTTAGTGGCGGTGGTGGCCG
GAGGAGCTGTTGCGAAATTTGGATCGGCACCGCCCCGGCGGCCTACCCAT
CGTGGGCGATGGACCGCGGCTTCGACGCCGTGCTGACGGTGGCGGACACG
GGGCCCGGCACGATGCCGCCCCGGCTGGCGTGGCTCGCCGACGCCGACGA
TGTCCGACACCTCTGCATCGAAGTTGCCTCCCCGGTGCTGCACGACGACC
CGTCCGAGACCGCGTGGGCGCCCGTGGCCTTGCAGCTCCGGGTAGTGCTG
GACTTTATCGACGGCGCGGAGCGGGACCGGCGGCGGCTGCTGGTCCACTG
CCTCGCCGGGCGCGGGGCGGCCGTCGGCATCGTTGCGGCGCATCGCCTGC
TGCGGCACGGCGTACACGTCGAGCACACGTTGCAGCGGGCGCGAGAGGCA
CAGCCGAAG
back to top