mRNA_P-wetherbeei_contig826.3.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig826.3.1
Unique NamemRNA_P-wetherbeei_contig826.3.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig826.3.1 vs. uniprot
Match: A0A4D9DDY3_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9DDY3_9STRA)

HSP 1 Score: 62.0 bits (149), Expect = 6.010e-7
Identity = 30/70 (42.86%), Postives = 45/70 (64.29%), Query Frame = 1 
Query:  214 LGAWQHVVTCARDGVVRLHSLARAYKPRDYVSPVAMGVSAAAGLAQVHDGVDRSLEALRIYRDERTDRGL 423
            LG W+H+++CARDG V LHSLA+A +P D ++P  + +S    L   H+ VDRS   L ++  +R  +GL
Sbjct:  386 LGVWRHLISCARDGRVILHSLAQASRPHDTLTPSVVSLSVRGELLTAHERVDRSDAFLGLHGRKRRAQGL 455
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BLAST of mRNA_P-wetherbeei_contig826.3.1 vs. uniprot
Match: W7U8U7_9STRA (Wd repeat-containing protein 24 n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7U8U7_9STRA)

HSP 1 Score: 61.6 bits (148), Expect = 8.230e-7
Identity = 30/70 (42.86%), Postives = 45/70 (64.29%), Query Frame = 1 
Query:  214 LGAWQHVVTCARDGVVRLHSLARAYKPRDYVSPVAMGVSAAAGLAQVHDGVDRSLEALRIYRDERTDRGL 423
            LG W+H+++CARDG V LHSLA+A +P D ++P  + +S    L   H+ VDRS   L ++  +R  +GL
Sbjct:  492 LGVWRHLISCARDGRVILHSLAQASRPHDTLTPSVVSLSVRGELLTSHERVDRSGAFLGLHGGKRRAQGL 561
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig826.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A4D9DDY3_9STRA6.010e-742.86Uncharacterized protein n=1 Tax=Nannochloropsis sa... [more]
W7U8U7_9STRA8.230e-742.86Wd repeat-containing protein 24 n=1 Tax=Nannochlor... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig826contigP-wetherbeei_contig826:5110..6757 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog65071.PYU1_T011249
PFAMsWD40,Zn_ribbon_17
Model size944
Max annot lvl121069|Pythiales
Hectar predicted targeting categoryother localisation
Exons4
Evalue3.04e-09
EggNOG OGsKOG0269@1|root,KOG0269@2759|Eukaryota,1MF7Z@121069|Pythiales
DescriptionWD repeat
Cds size942
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187030.1039646-CDS-P-wetherbeei_contig826:5109..55071683187030.1039646-CDS-P-wetherbeei_contig826:5109..5507Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig826 5110..5507 +
1683187030.1151946-CDS-P-wetherbeei_contig826:5809..59111683187030.1151946-CDS-P-wetherbeei_contig826:5809..5911Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig826 5810..5911 +
1683187030.13475-CDS-P-wetherbeei_contig826:6152..62771683187030.13475-CDS-P-wetherbeei_contig826:6152..6277Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig826 6153..6277 +
1683187030.147145-CDS-P-wetherbeei_contig826:6438..67551683187030.147145-CDS-P-wetherbeei_contig826:6438..6755Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig826 6439..6755 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig826.3.1prot_P-wetherbeei_contig826.3.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig826 5110..6755 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig826.3.1

>prot_P-wetherbeei_contig826.3.1 ID=prot_P-wetherbeei_contig826.3.1|Name=mRNA_P-wetherbeei_contig826.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=314bp
SSDVTTGLQWIDTPCLPHHESGEMSRDACLVGHFPYRSLLADTDSASSAG
GSAGDGGSGSGEGRPDAPTAVLGAWQHVVTCARDGVVRLHSLARAYKPRD
YVSPVAMGVSAAAGLAQVHDGVDRSLEALRIYRDERTDRGLGVFCEPPEP
TGLREVPAAGSRSPHHSMQRRRASGADILDDGDSPTASPKPASWGGAGAA
MTGMWLGQPPGGGSWGAGASPTLLGGHGGSGNAGGGGGAESPQPDGLDGV
APHPRGILQTLSPAPLPGAAVGAVPSPTAAAAAVTAGALRAAAAGRRVSD
GRAGDGVGGGGIGA
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mRNA from alignment at P-wetherbeei_contig826:5110..6757+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig826.3.1 ID=mRNA_P-wetherbeei_contig826.3.1|Name=mRNA_P-wetherbeei_contig826.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1648bp|location=Sequence derived from alignment at P-wetherbeei_contig826:5110..6757+ (Phaeothamnion wetherbeei SAG_119_79)
AGCAGCGACGTCACCACCGGACTGCAGTGGATCGACACGCCGTGCCTCCC
GCACCACGAAAGCGGCGAAATGTCCCGCGACGCCTGCCTCGTCGGCCACT
TTCCGTACCGTAGCCTCCTGGCCGACACTGACTCCGCCAGCAGCGCCGGC
GGTTCTGCCGGCGACGGCGGCTCTGGCAGCGGCGAGGGCCGGCCGGACGC
GCCAACGGCGGTGCTGGGCGCGTGGCAGCACGTGGTGACGTGCGCGCGGG
ACGGAGTGGTACGGCTGCACTCGCTGGCGCGGGCCTACAAGCCGCGGGAC
TACGTGAGCCCCGTGGCGATGGGCGTCAGCGCGGCGGCGGGTCTCGCCCA
GGTGCACGATGGCGTTGACCGCAGCCTCGAGGCGCTGCGCATCTACCGGT
GAGGAGTGAGAGCGAGTTTGTTGCCGGCTGTTTGGTTGCTTTTGTTTTGT
TTTTGTTTGTGCACGGTTGGTGACTTGAGAAGTGGCGGCACATCCTAGGT
ATATCCTGGTGGAACATCTTGTAACTTGTCCCGAGAATGTGTTTAAGCGC
GAAGGTCGGAATGACGCACCGAAGTCCACAATTAGCGCAACTTACCACAG
CTTACACTGGGCAACTTAGCTTCTGCGATCCCAAAGCGGGGCCTCAATCG
TCTCATTGTGACTTCTTTGTGCTCCCGACCTCCTTTACATTCTGCCGCAG
GGACGAGCGCACGGACCGCGGGCTCGGCGTCTTCTGCGAACCGCCGGAGC
CCACCGGACTGCGCGAGGTGCCCGCTGCCGGCAGCAGAAGTCCGCACCAC
AGGTGAGCGGCGGCCGGTGAGGTTGAACGGGAAACTTATGTGGCGGCTCG
GGCAATCACGGCGGGAATGACAGCTTTCGACGGCTTCGCTTTGATTGTGG
TTTCACTGTGTATCGTTTAAAAGCGCTTAAAAGCGACTTATCGGGAGCAG
CTGAGGATATCTACAGCCAGTTCGTCTTTTTTGACCCATTTTTGGCCGCT
GAACTTTCCGCTTTCTCTTGTCTGAGCTCCCTCGCCGGTACAGCATGCAG
CGCCGCCGAGCCTCCGGAGCCGACATTTTGGATGACGGCGACTCGCCCAC
CGCCTCGCCCAAGCCGGCCTCCTGGGGGGGCGCCGGGGCTGCCATGACGG
GCATGTGGCTCGGGCAACGTGAGTTTGAATGCACTGCTGATGAAGCCTGG
ATTTCCAGTTGAAGGGCATTCTTTGTAAGGAGTATCTCAGTATTTCTCTT
CCGTGCACTATCACGAACGTCATTTTTTCTGTGCCTGCGACCGTGTTTGC
CGCCGCACGTATCCTGGCTCCCCCTACAGCGCCAGGCGGGGGTTCCTGGG
GCGCCGGCGCCAGCCCGACCCTTCTCGGTGGGCACGGCGGCAGCGGGAAC
GCCGGAGGCGGCGGTGGCGCCGAGAGCCCACAGCCGGACGGCCTCGACGG
CGTGGCGCCGCACCCTCGCGGCATCCTACAGACGCTGTCGCCGGCGCCGC
TCCCGGGCGCCGCGGTGGGGGCGGTACCGAGTCCGACGGCCGCTGCGGCG
GCGGTTACAGCAGGAGCGCTGCGGGCGGCGGCAGCGGGGAGACGCGTCTC
GGACGGGAGGGCCGGTGATGGCGTTGGTGGCGGCGGCATAGGTGCTGG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig826:5110..6757+

>mRNA_P-wetherbeei_contig826.3.1 ID=mRNA_P-wetherbeei_contig826.3.1|Name=mRNA_P-wetherbeei_contig826.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=942bp|location=Sequence derived from alignment at P-wetherbeei_contig826:5110..6757+ (Phaeothamnion wetherbeei SAG_119_79)
AGCAGCGACGTCACCACCGGACTGCAGTGGATCGACACGCCGTGCCTCCC
GCACCACGAAAGCGGCGAAATGTCCCGCGACGCCTGCCTCGTCGGCCACT
TTCCGTACCGTAGCCTCCTGGCCGACACTGACTCCGCCAGCAGCGCCGGC
GGTTCTGCCGGCGACGGCGGCTCTGGCAGCGGCGAGGGCCGGCCGGACGC
GCCAACGGCGGTGCTGGGCGCGTGGCAGCACGTGGTGACGTGCGCGCGGG
ACGGAGTGGTACGGCTGCACTCGCTGGCGCGGGCCTACAAGCCGCGGGAC
TACGTGAGCCCCGTGGCGATGGGCGTCAGCGCGGCGGCGGGTCTCGCCCA
GGTGCACGATGGCGTTGACCGCAGCCTCGAGGCGCTGCGCATCTACCGGG
ACGAGCGCACGGACCGCGGGCTCGGCGTCTTCTGCGAACCGCCGGAGCCC
ACCGGACTGCGCGAGGTGCCCGCTGCCGGCAGCAGAAGTCCGCACCACAG
CATGCAGCGCCGCCGAGCCTCCGGAGCCGACATTTTGGATGACGGCGACT
CGCCCACCGCCTCGCCCAAGCCGGCCTCCTGGGGGGGCGCCGGGGCTGCC
ATGACGGGCATGTGGCTCGGGCAACCGCCAGGCGGGGGTTCCTGGGGCGC
CGGCGCCAGCCCGACCCTTCTCGGTGGGCACGGCGGCAGCGGGAACGCCG
GAGGCGGCGGTGGCGCCGAGAGCCCACAGCCGGACGGCCTCGACGGCGTG
GCGCCGCACCCTCGCGGCATCCTACAGACGCTGTCGCCGGCGCCGCTCCC
GGGCGCCGCGGTGGGGGCGGTACCGAGTCCGACGGCCGCTGCGGCGGCGG
TTACAGCAGGAGCGCTGCGGGCGGCGGCAGCGGGGAGACGCGTCTCGGAC
GGGAGGGCCGGTGATGGCGTTGGTGGCGGCGGCATAGGTGCT
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