mRNA_P-wetherbeei_contig8258.3.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig8258.3.1
Unique NamemRNA_P-wetherbeei_contig8258.3.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig8258.3.1 vs. uniprot
Match: D7G6X7_ECTSI (Chloroplast 50S ribosomal protein 17 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G6X7_ECTSI)

HSP 1 Score: 152 bits (383), Expect = 2.070e-43
Identity = 79/106 (74.53%), Postives = 87/106 (82.08%), Query Frame = 3 
Query:  180 RNMVTSLIKHERIRTTVPRAKALRRIADQMVTLAKTDTLHARRQAATVVMEQGANKKLFDVLGPRYKDRVGGYTRVMLLARPRPGDKADMAIIEYVDREGELRPAK 497
            RNMVTS I HERIRTTVPRAK LR++AD MVTLAK  T H +RQA  VV E  A  KLF+VLGPRYKDR GGYTRVM L +PR GD+ADMAIIE+VDREGELRPA+
Sbjct:   22 RNMVTSFIYHERIRTTVPRAKELRKVADNMVTLAKKGTPHHQRQAQGVVRENAAVVKLFEVLGPRYKDRPGGYTRVMKLQKPRKGDQADMAIIEFVDREGELRPAR 127
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BLAST of mRNA_P-wetherbeei_contig8258.3.1 vs. uniprot
Match: A0A835Z8L6_9STRA (Chloroplast 50S ribosomal protein 17 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z8L6_9STRA)

HSP 1 Score: 150 bits (378), Expect = 1.140e-42
Identity = 75/124 (60.48%), Postives = 95/124 (76.61%), Query Frame = 3 
Query:  138 TRNANGAPSQSCHCRNMVTSLIKHERIRTTVPRAKALRRIADQMVTLAKTDTLHARRQAATVVMEQGANKKLFDVLGPRYKDRVGGYTRVMLLARPRPGDKADMAIIEYVDREGELRPAKPTSK 509
            +R   G   +    +NMVTSLI HERI+TTVP+AK L+ +ADQMVT AKT TLH+RR A + + ++GA  KLF VLGPRY++R GGYTR++ LA PR GDKADM +IE+VDR+GELRPA+P  K
Sbjct:   11 SRMGRGTAHRIAMLKNMVTSLITHERIKTTVPKAKNLKVLADQMVTHAKTGTLHSRRLAQSTIQDKGALDKLFKVLGPRYEERPGGYTRILKLATPRLGDKADMCLIEFVDRQGELRPARPVGK 134
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BLAST of mRNA_P-wetherbeei_contig8258.3.1 vs. uniprot
Match: W7U3L1_9STRA (Ribosomal protein l17 n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7U3L1_9STRA)

HSP 1 Score: 141 bits (356), Expect = 2.710e-39
Identity = 72/107 (67.29%), Postives = 86/107 (80.37%), Query Frame = 3 
Query:  180 RNMVTSLIKHERIRTTVPRAKALRRIADQMVTLAKTDTLHARRQAATVVMEQGANKKLFDVLGPRYKDRVGGYTRVMLLARPRPGDKADMAIIEYVDREGELRPAKP 500
            RNMVTSL++HERIRTT  +AK LRR+AD+MVT AK  +LHARRQAA V+  +   KKLFDVLGPRY  R GGYTRV+ L R RPGD A+M++IE+V R GELRPA+P
Sbjct:   18 RNMVTSLVEHERIRTTTAKAKELRRVADRMVTWAKDGSLHARRQAAMVIRTKEHLKKLFDVLGPRYLTRAGGYTRVLKLQRFRPGDAAEMSLIEFVGRPGELRPARP 124
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BLAST of mRNA_P-wetherbeei_contig8258.3.1 vs. uniprot
Match: A0A7S0ASE6_9STRA (Hypothetical protein (Fragment) n=1 Tax=Minutocellus polymorphus TaxID=265543 RepID=A0A7S0ASE6_9STRA)

HSP 1 Score: 143 bits (361), Expect = 2.910e-39
Identity = 69/107 (64.49%), Postives = 89/107 (83.18%), Query Frame = 3 
Query:  180 RNMVTSLIKHERIRTTVPRAKALRRIADQMVTLAKTDTLHARRQAATVVMEQGANKKLFDVLGPRYKDRVGGYTRVMLLARPRPGDKADMAIIEYVDREGELRPAKP 500
            RNMVTSLIKHERI TT+P+AK LR++AD+MV L K+ +LH+RRQA  V+ E+    KLF++LGPRY++R GGYTRV+ L+RPR GD AD+A+IEYVDR GE+R A+P
Sbjct:   60 RNMVTSLIKHERIVTTLPKAKELRKLADKMVGLGKSGSLHSRRQAGAVIRERPVLTKLFEILGPRYEEREGGYTRVLKLSRPREGDNADLAVIEYVDRPGEVRAARP 166
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BLAST of mRNA_P-wetherbeei_contig8258.3.1 vs. uniprot
Match: A0A7S2UAW0_9STRA (Hypothetical protein n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2UAW0_9STRA)

HSP 1 Score: 138 bits (348), Expect = 5.690e-38
Identity = 70/107 (65.42%), Postives = 85/107 (79.44%), Query Frame = 3 
Query:  180 RNMVTSLIKHERIRTTVPRAKALRRIADQMVTLAKTDTLHARRQAATVVMEQGANKKLFDVLGPRYKDRVGGYTRVMLLARPRPGDKADMAIIEYVDREGELRPAKP 500
            RNMVTSLIKHERI TT+P+AK LRR+A++++  AK  +LHARR A  +V E+    KLF+VLGPRY+DR GGYTRV+ LAR R GD A MAIIEYVDR GE+R A+P
Sbjct:   22 RNMVTSLIKHERIETTMPKAKELRRVAEKVIGWAKDGSLHARRMADKIVREKPVLSKLFEVLGPRYQDREGGYTRVLQLARRRQGDNAPMAIIEYVDRPGEIRAARP 128
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BLAST of mRNA_P-wetherbeei_contig8258.3.1 vs. uniprot
Match: A0A4D9CVS6_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CVS6_9STRA)

HSP 1 Score: 141 bits (356), Expect = 9.530e-37
Identity = 72/107 (67.29%), Postives = 86/107 (80.37%), Query Frame = 3 
Query:  180 RNMVTSLIKHERIRTTVPRAKALRRIADQMVTLAKTDTLHARRQAATVVMEQGANKKLFDVLGPRYKDRVGGYTRVMLLARPRPGDKADMAIIEYVDREGELRPAKP 500
            RNMVTSL++HERIRTT  +AK LRR+AD+MVT AK  +LHARRQAA V+  +   KKLFDVLGPRY  R GGYTRV+ L R RPGD A+M++IE+V R GELRPA+P
Sbjct:   18 RNMVTSLVEHERIRTTTAKAKELRRVADRMVTWAKDGSLHARRQAAMVIRTKEHLKKLFDVLGPRYLTRAGGYTRVLKLQRFRPGDAAEMSLIEFVGRPGELRPARP 124
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BLAST of mRNA_P-wetherbeei_contig8258.3.1 vs. uniprot
Match: A0A7S2LPJ0_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2LPJ0_9STRA)

HSP 1 Score: 134 bits (337), Expect = 1.920e-36
Identity = 68/107 (63.55%), Postives = 83/107 (77.57%), Query Frame = 3 
Query:  180 RNMVTSLIKHERIRTTVPRAKALRRIADQMVTLAKTDTLHARRQAATVVMEQGANKKLFDVLGPRYKDRVGGYTRVMLLARPRPGDKADMAIIEYVDREGELRPAKP 500
            RNMVTSLI HERI TT P+AK L+R+A+ M+   K  +LHARRQA  ++ E+ A  KLF+VLGPRY +R GGYTRV+ LA+PR GD A M+IIEYVDR GE+R AKP
Sbjct:   22 RNMVTSLIYHERIVTTTPKAKELKRLAEWMIGFGKDGSLHARRQADAILREKPALTKLFEVLGPRYAERDGGYTRVLQLAKPRTGDNAPMSIIEYVDRPGEIRAAKP 128
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BLAST of mRNA_P-wetherbeei_contig8258.3.1 vs. uniprot
Match: A0A7S3QJX6_9STRA (Hypothetical protein n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3QJX6_9STRA)

HSP 1 Score: 132 bits (333), Expect = 7.230e-36
Identity = 66/107 (61.68%), Postives = 85/107 (79.44%), Query Frame = 3 
Query:  180 RNMVTSLIKHERIRTTVPRAKALRRIADQMVTLAKTDTLHARRQAATVVMEQGANKKLFDVLGPRYKDRVGGYTRVMLLARPRPGDKADMAIIEYVDREGELRPAKP 500
            RNMVTSLI HERI TTVP+AK +R +A++++  AK  +LH+RR A  VV E+ A  KLF+VLGPRY+DR GGYTRV+ L++PR GD A MA++EYVDR GE+R A+P
Sbjct:   22 RNMVTSLIYHERIVTTVPKAKEVRHLAEKIIKHAKNGSLHSRRLADKVVREEPAVTKLFEVLGPRYQDREGGYTRVLKLSKPRQGDNAPMAVLEYVDRPGEIRAARP 128
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BLAST of mRNA_P-wetherbeei_contig8258.3.1 vs. uniprot
Match: A0A6T7JZV4_9STRA (Hypothetical protein n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A6T7JZV4_9STRA)

HSP 1 Score: 132 bits (333), Expect = 8.140e-36
Identity = 70/119 (58.82%), Postives = 89/119 (74.79%), Query Frame = 3 
Query:  180 RNMVTSLIKHERIRTTVPRAKALRRIADQMVTLAKTDTLHARRQAATVVMEQGANKKLFDVLGPRYKDRVGGYTRVMLLARPRPGDKADMAIIEYVDREGELRPAKPTSK--MAWFNSM 530
            RNMVTSLIKHERI TT+P+AK LR +AD++V  AK   +HA++ A  VV E+    KLF+V+GPRY+DR GGYTRVM L+RPR GD A MA+IEYVDR GE+R A+   K    +FN++
Sbjct:   23 RNMVTSLIKHERIVTTLPKAKELRHLADKVVGYAKKGDVHAKQLALRVVREKPMVTKLFEVMGPRYEDRDGGYTRVMKLSRPRRGDNAPMAVIEYVDRPGEIRAARVPEKRKQKYFNNL 141
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BLAST of mRNA_P-wetherbeei_contig8258.3.1 vs. uniprot
Match: A0A7S3PMY3_9STRA (Hypothetical protein n=1 Tax=Aplanochytrium stocchinoi TaxID=215587 RepID=A0A7S3PMY3_9STRA)

HSP 1 Score: 132 bits (332), Expect = 9.640e-36
Identity = 68/110 (61.82%), Postives = 86/110 (78.18%), Query Frame = 3 
Query:  180 RNMVTSLIKHERIRTTVPRAKALRRIADQMVTLAKTDTLHARRQAATVVMEQGANKKLFDVLGPRYKDRVGGYTRVMLLARPRPGDKADMAIIEYVDREGELRPAKPTSK 509
            RNMVTSLI +ERI+TTVP+AK LRR+AD MVTL K  +LHARRQ+  VV ++ A  KLFDVLGPRY +R GG+TR++ +   R GD ADM ++E+VD+EGELR AKP  +
Sbjct:   22 RNMVTSLIHYERIKTTVPKAKELRRVADWMVTLGKKGSLHARRQSLKVVRDKAAMHKLFDVLGPRYINRPGGFTRIVRVGHRR-GDAADMCVMEFVDKEGELRKAKPVDE 130
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig8258.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G6X7_ECTSI2.070e-4374.53Chloroplast 50S ribosomal protein 17 n=2 Tax=Ectoc... [more]
A0A835Z8L6_9STRA1.140e-4260.48Chloroplast 50S ribosomal protein 17 n=1 Tax=Tribo... [more]
W7U3L1_9STRA2.710e-3967.29Ribosomal protein l17 n=1 Tax=Nannochloropsis gadi... [more]
A0A7S0ASE6_9STRA2.910e-3964.49Hypothetical protein (Fragment) n=1 Tax=Minutocell... [more]
A0A7S2UAW0_9STRA5.690e-3865.42Hypothetical protein n=1 Tax=Attheya septentrional... [more]
A0A4D9CVS6_9STRA9.530e-3767.29Uncharacterized protein n=1 Tax=Nannochloropsis sa... [more]
A0A7S2LPJ0_9STRA1.920e-3663.55Hypothetical protein n=1 Tax=Leptocylindrus danicu... [more]
A0A7S3QJX6_9STRA7.230e-3661.68Hypothetical protein n=1 Tax=Chaetoceros debilis T... [more]
A0A6T7JZV4_9STRA8.140e-3658.82Hypothetical protein n=1 Tax=Skeletonema marinoi T... [more]
A0A7S3PMY3_9STRA9.640e-3661.82Hypothetical protein n=1 Tax=Aplanochytrium stocch... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig8258contigP-wetherbeei_contig8258:1704..2351 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7G6X7
PFAMsRibosomal_L17
Model size648
Max annot lvl2759|Eukaryota
KEGG rclassRC00293,RC01792,RC01815,RC02504
KEGG koko:K02879,ko:K14652
KEGG ReactionR00425,R07281
KEGG Pathwayko00740,ko00790,ko01100,ko01110,ko03010,map00740,map00790,map01100,map01110,map03010
KEGG ModuleM00125,M00178,M00840
Hectar predicted targeting categoryother localisation
GOsGO:0000002,GO:0000313,GO:0000315,GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005759,GO:0005761,GO:0005762,GO:0005829,GO:0005840,GO:0006996,GO:0007005,GO:0008150,GO:0009987,GO:0015934,GO:0016043,GO:0022625,GO:0022626,GO:0031974,GO:0032991,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044391,GO:0044422,GO:0044424,GO:0044429,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0070013,GO:0071840,GO:0098798,GO:1990904
Exons1
Evalue1.17e-43
EggNOG OGsCOG0203@1|root,KOG3280@2759|Eukaryota
Ec32 ortholog descriptionRibosomal protein L17
Ec32 orthologEc-01_011850.1
EC3.5.4.25,4.1.99.12
Descriptionstructural constituent of ribosome
Cds size426
COG categoryJ
BRITEbr01610,ko00000,ko00001,ko00002,ko01000,ko03011
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187029.813547-UTR-P-wetherbeei_contig8258:1703..17401683187029.813547-UTR-P-wetherbeei_contig8258:1703..1740Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig8258 1704..1740 -
1683187029.8443267-UTR-P-wetherbeei_contig8258:2166..23511683187029.8443267-UTR-P-wetherbeei_contig8258:2166..2351Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig8258 2167..2351 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187029.831564-CDS-P-wetherbeei_contig8258:1740..21661683187029.831564-CDS-P-wetherbeei_contig8258:1740..2166Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig8258 1741..2166 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig8258.3.1prot_P-wetherbeei_contig8258.3.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig8258 1741..2166 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig8258.3.1

>prot_P-wetherbeei_contig8258.3.1 ID=prot_P-wetherbeei_contig8258.3.1|Name=mRNA_P-wetherbeei_contig8258.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=142bp
MVTSLIKHERIRTTVPRAKALRRIADQMVTLAKTDTLHARRQAATVVMEQ
GANKKLFDVLGPRYKDRVGGYTRVMLLARPRPGDKADMAIIEYVDREGEL
RPAKPTSKMAWFNSMFLPNMASPSAAAAVRATTPYRPAGPG*
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mRNA from alignment at P-wetherbeei_contig8258:1704..2351-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig8258.3.1 ID=mRNA_P-wetherbeei_contig8258.3.1|Name=mRNA_P-wetherbeei_contig8258.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=648bp|location=Sequence derived from alignment at P-wetherbeei_contig8258:1704..2351- (Phaeothamnion wetherbeei SAG_119_79)
GGAAGAGCGGGAAAACAGTACTATGAAGAAGCGCATCGCATTTTCAAGAC
TCGGCCGCGACACGGCGCATCGATGGGCCATGCTACGGTAAGCTGCGCCC
ATCCATCCTCTCTTCCTCAGATTTCTCTCAGCGATGCACGAGAAATGCCA
ACGGAGCTCCTTCCCAATCTTGTCACTGCAGAAACATGGTGACGTCCTTG
ATCAAACACGAGCGTATCCGAACAACCGTGCCGCGCGCAAAGGCGCTGCG
GCGCATCGCCGATCAGATGGTCACGCTAGCCAAGACGGACACGCTGCATG
CGCGGCGCCAGGCAGCCACCGTAGTGATGGAACAGGGCGCCAACAAGAAG
CTCTTTGACGTGCTCGGCCCGCGCTACAAGGACCGCGTGGGCGGCTACAC
GCGCGTGATGCTCCTGGCGCGGCCGCGGCCCGGCGACAAGGCCGACATGG
CCATCATTGAGTACGTTGACCGGGAAGGAGAGCTGCGGCCGGCCAAGCCG
ACGTCGAAGATGGCGTGGTTCAACAGTATGTTTCTGCCAAATATGGCCTC
GCCGTCGGCGGCTGCGGCTGTACGAGCGACGACGCCATACCGACCGGCAG
GGCCAGGCTGATCCGACGTATAACTCTTAACACATAGCATCTGGATCG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig8258:1704..2351-

>mRNA_P-wetherbeei_contig8258.3.1 ID=mRNA_P-wetherbeei_contig8258.3.1|Name=mRNA_P-wetherbeei_contig8258.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=426bp|location=Sequence derived from alignment at P-wetherbeei_contig8258:1704..2351- (Phaeothamnion wetherbeei SAG_119_79)
ATGGTGACGTCCTTGATCAAACACGAGCGTATCCGAACAACCGTGCCGCG
CGCAAAGGCGCTGCGGCGCATCGCCGATCAGATGGTCACGCTAGCCAAGA
CGGACACGCTGCATGCGCGGCGCCAGGCAGCCACCGTAGTGATGGAACAG
GGCGCCAACAAGAAGCTCTTTGACGTGCTCGGCCCGCGCTACAAGGACCG
CGTGGGCGGCTACACGCGCGTGATGCTCCTGGCGCGGCCGCGGCCCGGCG
ACAAGGCCGACATGGCCATCATTGAGTACGTTGACCGGGAAGGAGAGCTG
CGGCCGGCCAAGCCGACGTCGAAGATGGCGTGGTTCAACAGTATGTTTCT
GCCAAATATGGCCTCGCCGTCGGCGGCTGCGGCTGTACGAGCGACGACGC
CATACCGACCGGCAGGGCCAGGCTGA
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