mRNA_P-wetherbeei_contig8238.3.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig8238.3.1
Unique NamemRNA_P-wetherbeei_contig8238.3.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig8238.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig8238contigP-wetherbeei_contig8238:979..2395 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size1149
Hectar predicted targeting categoryother localisation
Exons2
Cds size894
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187028.489821-UTR-P-wetherbeei_contig8238:978..12331683187028.489821-UTR-P-wetherbeei_contig8238:978..1233Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig8238 979..1233 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187028.5009637-CDS-P-wetherbeei_contig8238:1233..20031683187028.5009637-CDS-P-wetherbeei_contig8238:1233..2003Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig8238 1234..2003 -
1683187028.5114257-CDS-P-wetherbeei_contig8238:2271..23951683187028.5114257-CDS-P-wetherbeei_contig8238:2271..2395Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig8238 2272..2395 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig8238.3.1prot_P-wetherbeei_contig8238.3.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig8238 1234..2395 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig8238.3.1

>prot_P-wetherbeei_contig8238.3.1 ID=prot_P-wetherbeei_contig8238.3.1|Name=mRNA_P-wetherbeei_contig8238.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=298bp
LLPPKPQLLQRVVLWADYHLRWTPRPLFPPAPAGGNSPLPPPDSAERPPD
VRLETYRSMTVDADAGLARLAAERDEWRRHALAANPPPPPEHQQPLSQQQ
PSPSPQQQQPPPLPQQQPAPAAAAAEAQQLPQPPSPLLPELATPPHDQRQ
QQRQQQRQTEAWAPAPRVQGDEHTHSGAGANSGFSFSGGSSRSSVSGGDA
GVGEGDGGVGDGGKADVGGLGTGGSNNAASDSAYHGRFEPGGGSGGAHDH
SLFGGGALWDDHSGGGGGGSGRSQDGSGLPPVHQLMAPTIDDIFGNP*
back to top

mRNA from alignment at P-wetherbeei_contig8238:979..2395-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig8238.3.1 ID=mRNA_P-wetherbeei_contig8238.3.1|Name=mRNA_P-wetherbeei_contig8238.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1417bp|location=Sequence derived from alignment at P-wetherbeei_contig8238:979..2395- (Phaeothamnion wetherbeei SAG_119_79)
CTGCTGCCGCCGAAGCCGCAGCTGCTGCAGCGGGTGGTGCTGTGGGCGGA
CTACCACCTGCGGTGGACGCCGCGGCCGCTCTTCCCGCCTGCGCCGGCAG
GAGGCAACTCGCCATTACCGCCACGTGAGTTCCGGGTTGGAGGGTCAATG
GCAGCCTCTGTCTCTTGCTCAATCTGCTTGTTTCTCCGTTCATTTTTGCT
TGTAACCACCGTTTAATCTCTGGTCCGGTGGAAAGAGTTTCGCCTTTCCT
TCCATTCTGCTTGTGAACATTTAGCGTCCCACTGTTAAATGTCTTTTTGA
CCCACTGAAAGTGTATTCCATGTTGCTTGACTCCGTCTCGTTCTTTTCAT
CCAACCGCCAACTCGTGCTGCTCTCGTTTCTCCACCCTGCAGCGGACAGC
GCAGAGCGTCCGCCAGATGTCCGGCTGGAGACCTACCGAAGCATGACGGT
CGACGCCGATGCGGGTCTGGCGCGCCTTGCCGCCGAACGCGACGAATGGC
GGCGGCACGCGCTGGCTGCTAACCCACCGCCGCCGCCAGAGCACCAACAG
CCGCTGTCACAGCAGCAGCCGTCGCCGTCACCACAGCAGCAACAGCCGCC
GCCACTGCCGCAGCAGCAGCCGGCGCCGGCTGCTGCCGCGGCAGAGGCGC
AGCAGCTGCCGCAGCCGCCGTCGCCGCTCCTGCCCGAGTTGGCGACGCCA
CCGCACGACCAACGTCAGCAGCAGCGGCAGCAGCAACGGCAGACGGAGGC
ATGGGCGCCGGCGCCGCGGGTGCAGGGGGACGAGCACACACATTCCGGTG
CCGGCGCCAACAGCGGCTTCAGCTTCAGCGGCGGCAGCAGCAGAAGCAGC
GTTTCCGGAGGCGACGCCGGCGTCGGCGAAGGCGATGGCGGCGTGGGCGA
CGGCGGCAAAGCCGATGTTGGCGGCTTGGGCACCGGCGGCAGCAACAATG
CCGCTTCCGACTCTGCCTACCACGGCCGCTTCGAGCCCGGCGGCGGAAGC
GGCGGGGCGCATGATCACTCGTTGTTTGGCGGTGGAGCTTTGTGGGACGA
TCACAGCGGTGGCGGTGGCGGTGGCAGCGGCAGGTCCCAGGATGGCTCGG
GTCTGCCACCGGTTCACCAACTCATGGCGCCGACAATTGACGATATCTTT
GGCAATCCATAGCAAGCCAGCCCAATCTGGCTAGAGTTAGCTACCTAACT
GGTTAGCTGCACAGGTTTCAGCCTGATCGGTCGAGAGAGGGGCTAGACAG
AATAGTTGCATCCACACAATCCCCTCTCAGGGAGGGGAGGGTCCCAAAGT
AATAAGCTGTTGCAGCGCAAGCGCGCCTTGAAATGCCTCATAAACAATGA
TGACGGCTGCCAGCTTCCAATTGGATGCCAATGTGAAGTCTGAGTAGTGC
CCTGGTGTGCTTGGGGG
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig8238:979..2395-

>mRNA_P-wetherbeei_contig8238.3.1 ID=mRNA_P-wetherbeei_contig8238.3.1|Name=mRNA_P-wetherbeei_contig8238.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=894bp|location=Sequence derived from alignment at P-wetherbeei_contig8238:979..2395- (Phaeothamnion wetherbeei SAG_119_79)
CTGCTGCCGCCGAAGCCGCAGCTGCTGCAGCGGGTGGTGCTGTGGGCGGA
CTACCACCTGCGGTGGACGCCGCGGCCGCTCTTCCCGCCTGCGCCGGCAG
GAGGCAACTCGCCATTACCGCCACCGGACAGCGCAGAGCGTCCGCCAGAT
GTCCGGCTGGAGACCTACCGAAGCATGACGGTCGACGCCGATGCGGGTCT
GGCGCGCCTTGCCGCCGAACGCGACGAATGGCGGCGGCACGCGCTGGCTG
CTAACCCACCGCCGCCGCCAGAGCACCAACAGCCGCTGTCACAGCAGCAG
CCGTCGCCGTCACCACAGCAGCAACAGCCGCCGCCACTGCCGCAGCAGCA
GCCGGCGCCGGCTGCTGCCGCGGCAGAGGCGCAGCAGCTGCCGCAGCCGC
CGTCGCCGCTCCTGCCCGAGTTGGCGACGCCACCGCACGACCAACGTCAG
CAGCAGCGGCAGCAGCAACGGCAGACGGAGGCATGGGCGCCGGCGCCGCG
GGTGCAGGGGGACGAGCACACACATTCCGGTGCCGGCGCCAACAGCGGCT
TCAGCTTCAGCGGCGGCAGCAGCAGAAGCAGCGTTTCCGGAGGCGACGCC
GGCGTCGGCGAAGGCGATGGCGGCGTGGGCGACGGCGGCAAAGCCGATGT
TGGCGGCTTGGGCACCGGCGGCAGCAACAATGCCGCTTCCGACTCTGCCT
ACCACGGCCGCTTCGAGCCCGGCGGCGGAAGCGGCGGGGCGCATGATCAC
TCGTTGTTTGGCGGTGGAGCTTTGTGGGACGATCACAGCGGTGGCGGTGG
CGGTGGCAGCGGCAGGTCCCAGGATGGCTCGGGTCTGCCACCGGTTCACC
AACTCATGGCGCCGACAATTGACGATATCTTTGGCAATCCATAG
back to top