mRNA_P-wetherbeei_contig8231.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig8231.1.1
Unique NamemRNA_P-wetherbeei_contig8231.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig8231.1.1 vs. uniprot
Match: A0A835ZHS5_9STRA (PRA1 family protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZHS5_9STRA)

HSP 1 Score: 150 bits (380), Expect = 8.750e-39
Identity = 88/199 (44.22%), Postives = 116/199 (58.29%), Query Frame = 2 
Query:  356 ADGSTTQQMAVNLALLGGQVKTLGDKALTFARSRVTVGPFRPPKEFFGLGEAKAFGAPAASELAPRLRFNLPYFSTNYGALYLTLVMLSIITSPLSLCSLALLAAGWYAVTRAQSNPEVDTVALGPLQVSKPVAYAGMLCVSVLCGSLLLGSMFSWPLWVGAAAAAGHAALREHAELAPQPQMTGDFDIDADLSKFIAA 952
            A  S T   A + A+  G+V   G KAL F  S+  + PFR P E FGLG  K F  P+AS+LA RL+ NLPY+STNY ALYL L  +SIITSP +L  L + A GW  + +  SNPE + V++G L V K VA+  M  VSV  G  LLG++  W LW+ A  A  HAA R+   LA   +   +  ++ D+  F+ A
Sbjct:   28 ASASETAGGAESTAMETGKV--YGLKALAFINSKAQLAPFRMPAELFGLGAVKPFSIPSASDLAVRLKLNLPYYSTNYAALYLALCAMSIITSPTALICLTVTAGGWILLLKTASNPEAEGVSIGSLTVKKQVAFVVMGIVSVFAGLTLLGTLLGWSLWLSAFVATAHAAARDATALADAAEANANR-LEGDIEPFLNA 223
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BLAST of mRNA_P-wetherbeei_contig8231.1.1 vs. uniprot
Match: A0A7S2V1H3_9STRA (PRA1 family protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V1H3_9STRA)

HSP 1 Score: 79.7 bits (195), Expect = 3.740e-13
Identity = 59/191 (30.89%), Postives = 90/191 (47.12%), Query Frame = 2 
Query:  416 KTLGDKALTFARSRVTVGPFRPPKEFFGLGEAKAF----------GAPAASELAPRLRFNLPYFSTNYGALYLTLVMLSIITSPLSLCSLALLAAGWYAVTRA--------------------------QSNPEVDTVAL--GPLQVSKPVAYAGMLCVSVLCGSLLLGSMFSWPLWVGAAAAAGHAALRE 874
            K++ DK + F R+RVT G  R P  FFGLG   A           G+P  S+L  R R NL YF  NY  + ++ + +S++T+P+SL  LA+LA GW+ + R                           Q NP    + L  G ++V++  A+ GM  +S++   LLL +  SW  W+       H  +R+
Sbjct:   33 KSVLDKTIEFTRTRVTWGQLRNPMVFFGLGGQGANSTSPRPFNFEGSP--SDLLKRFRSNLSYFLANYALIIVSFLAISMLTNPMSLIYLAILAGGWFFILRKAGQAAQAADVGAAAKSDGFAADPSTHQGNPGEPFLVLMGGKIKVTRYQAFIGMSILSLVLIVLLLQAAMSWLFWISVVLVIAHGIMRD 221
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BLAST of mRNA_P-wetherbeei_contig8231.1.1 vs. uniprot
Match: A0A5N6U0I0_9EURO (PRA1 family protein n=2 Tax=Aspergillus TaxID=5052 RepID=A0A5N6U0I0_9EURO)

HSP 1 Score: 55.1 bits (131), Expect = 3.230e-5
Identity = 46/135 (34.07%), Postives = 72/135 (53.33%), Query Frame = 2 
Query:  476 RPPKEFFGLGEAKAFGAPAA-SELAPRLRFNLPYFSTNYGALYLTLVMLSIITSPLSLCSLALLAAGWYAVTRAQSNPEVDTVALGPLQVSKPVAYAGMLCVSVLCGSLLLGSMFSWPLW-VGAAAAA--GHAAL 868
            RP  EF  +   K    PA   E+  R+ +NL YFS+NY A+++ L + S++T+PL L  + L+A G Y + + +   ++D   +G  + +    Y G+L V+V  G   L S F+  LW +GA      GHAA 
Sbjct:   35 RPISEFLDI---KRVSKPANFGEVQSRVNYNLSYFSSNYAAVFVMLSIYSLLTNPLLLFVIILVAGGLYGIGKLEGR-DLD---VGVARFNTSQLYTGLLIVAVPLG--FLASPFTTVLWLIGATGVCVFGHAAF 160
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig8231.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A835ZHS5_9STRA8.750e-3944.22PRA1 family protein n=1 Tax=Tribonema minus TaxID=... [more]
A0A7S2V1H3_9STRA3.740e-1330.89PRA1 family protein n=1 Tax=Fibrocapsa japonica Ta... [more]
A0A5N6U0I0_9EURO3.230e-534.07PRA1 family protein n=2 Tax=Aspergillus TaxID=5052... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig8231contigP-wetherbeei_contig8231:802..2864 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog112098.XP_008612860.1
PFAMsPRA1
Model size1599
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons3
Evalue9.08e-11
EggNOG OGs2B17F@1|root,2S09R@2759|Eukaryota
DescriptionPRA1 family protein
Cds size681
COG categoryS
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187028.1797237-UTR-P-wetherbeei_contig8231:801..14331683187028.1797237-UTR-P-wetherbeei_contig8231:801..1433Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig8231 802..1433 -
1683187028.2145433-UTR-P-wetherbeei_contig8231:2344..24071683187028.2145433-UTR-P-wetherbeei_contig8231:2344..2407Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig8231 2345..2407 -
1683187028.2234368-UTR-P-wetherbeei_contig8231:2641..28641683187028.2234368-UTR-P-wetherbeei_contig8231:2641..2864Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig8231 2642..2864 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187028.1960862-CDS-P-wetherbeei_contig8231:1433..19881683187028.1960862-CDS-P-wetherbeei_contig8231:1433..1988Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig8231 1434..1988 -
1683187028.206402-CDS-P-wetherbeei_contig8231:2218..23441683187028.206402-CDS-P-wetherbeei_contig8231:2218..2344Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig8231 2219..2344 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig8231.1.1prot_P-wetherbeei_contig8231.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig8231 1434..2344 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig8231.1.1

>prot_P-wetherbeei_contig8231.1.1 ID=prot_P-wetherbeei_contig8231.1.1|Name=mRNA_P-wetherbeei_contig8231.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=227bp
MMASQTPAMEPLMSGSSTPTQYNADGSTTQQMAVNLALLGGQVKTLGDKA
LTFARSRVTVGPFRPPKEFFGLGEAKAFGAPAASELAPRLRFNLPYFSTN
YGALYLTLVMLSIITSPLSLCSLALLAAGWYAVTRAQSNPEVDTVALGPL
QVSKPVAYAGMLCVSVLCGSLLLGSMFSWPLWVGAAAAAGHAALREHAEL
APQPQMTGDFDIDADLSKFIAAGQQA*
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mRNA from alignment at P-wetherbeei_contig8231:802..2864-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig8231.1.1 ID=mRNA_P-wetherbeei_contig8231.1.1|Name=mRNA_P-wetherbeei_contig8231.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=2063bp|location=Sequence derived from alignment at P-wetherbeei_contig8231:802..2864- (Phaeothamnion wetherbeei SAG_119_79)
AGATGCTTCCCATCCCTCCGGGTAAAGAAAAAGAAGCATTCTAACATCCC
GGGGGTGGGGGGTATTATTCAAAGGAAGCATTCTAGGTCGGACACAGACA
AAGTTAGAACCCCACTAAAACCTCCAAAAACGGCAATAAAAGAGACCTTG
AGAAATCCAGAGGGCACCACGGGAGAGTTCGCGGCGAATTCATCCAAAAT
GCAGGGTTACTGACCTTCATACGGTGATACGCCATCGTCGGGCACGCGTT
CATAGCTTCTTCCCGCCATAGCGTTCCACGCTCTCCTCCTTTTCTTCTCT
ACCCTCCAGAAAGCCCTGCCAATGTCCAACGAGCAGGTTTTCCCCTTTCG
ATATTGCGAACGCTCGAGAGCTGGACCTTTGTGAGGGAGGAGATTTTTGT
TTGCCTCTCCGCTGACCTTTGCCGCCTTCCTGCCTTCTTTTGCTTTTTCT
GACGCAGAACAATTTGCCAGAAACGCTCCTGGAAAAACTAGCGCACCCCA
GCCTACCAGTCCCTAGCAAAATGATGGCATCGCAGACACCGGCGATGGAG
CCGCTAATGTCCGGAAGCTCCACGCCGACACAATATAACGCGGATGGAAG
CACAACTCAACAAATGGCGGTAAATCTTGCCCTTCTTGGTGGCCAGGTGA
GCATTGATGGCTTTGAATACTGACATTGATGACGTTGATGAAGATTCCGC
TAAATTCAGACGGCTTTATGCGCGTTTTGGGGCGAAATTCGTTTTGGGCC
CCCGACCCAAGAACTCCGCAGAGACGACTTTCAAAAGTTTCTTCGTTCAG
GGCTAGCCGTTTCTTTGAAGGGTTCTATTTTGATCAGCGCCTGTATTTCT
GATCAAGGTAATCTCACCTTCAACAGGTCAAGACACTGGGCGACAAGGCG
CTGACCTTCGCCCGCAGCCGCGTGACGGTCGGGCCCTTCCGGCCGCCGAA
GGAGTTCTTCGGCCTGGGCGAGGCCAAGGCCTTCGGCGCGCCCGCTGCCT
CGGAGCTCGCCCCTCGCCTCCGATTCAACCTACCGTATTTTTCGACAAAC
TACGGCGCCCTCTACCTGACCCTCGTCATGCTCTCCATCATTACCAGCCC
GCTCAGCCTCTGCAGCCTGGCCCTCCTCGCCGCCGGGTGGTACGCCGTCA
CACGCGCCCAGAGCAACCCGGAGGTCGACACCGTCGCGCTGGGACCGCTC
CAGGTCTCCAAGCCCGTCGCGTATGCCGGCATGCTCTGCGTGAGCGTGCT
ATGCGGGAGCCTGCTGCTCGGCAGCATGTTCTCATGGCCGCTGTGGGTTG
GCGCGGCAGCCGCGGCGGGCCACGCGGCGTTGCGGGAGCACGCCGAGCTG
GCGCCGCAGCCGCAGATGACGGGGGACTTTGACATCGACGCTGACCTGTC
TAAGTTCATCGCGGCGGGCCAGCAGGCATGACGGCCGGGCGCAGCGAGCG
GTGGTACCGCTTCGAGTAAACTTAGTACGTTTCTCTAGGCGGATCGGCGC
ATCGCAGGGAACGTTTTTGATGAAAAAGGAGCCGTTGTAAGCAACGGAGG
GAGTTTACTGGTGGTGGGTTGGCAGGTCGGGGGGAAGGAAGCCAAGAGAT
CTGGGGCATGAAGCAGCAGGCTGCAAGCTGCAAGAAAGTAACTGTTATTT
GGAACACGGCCGCTGGGAAACGGCCGGATGACCGAAGCGGCGGAGGCGGG
GGTTCAGTACTATCACAAGGGCGGCGGAGGGTAAGGGCCGGGGTTGGGGC
ACACGCTGTCGCCCAGCGGTCTCCTCCTTCGCGTGTTCCTTCGTTCATTG
TTGGCGACGGCTGTGGCACTGCATTGCCTTGTATGGCATTGCGACCTTTC
ACGCGTGCGGCTGTCTTTCTGCAACAGCAAAAGCTGAGAGGGGCGCCGTG
GGCGGTAGCGGCGGCGAGTGCTCCGGACGGGCAAGAAAATGAGCCACGGC
GGATCGCGGGGACCCCAGAGAGGGCGCCGTACTGCGGAGCGACGTCTGAT
GTTTGCGATAGCGGCAGTGGGAAAGAAGAATCAGTCAAAAAGACATATGT
ACGTACACCACCG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig8231:802..2864-

>mRNA_P-wetherbeei_contig8231.1.1 ID=mRNA_P-wetherbeei_contig8231.1.1|Name=mRNA_P-wetherbeei_contig8231.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=681bp|location=Sequence derived from alignment at P-wetherbeei_contig8231:802..2864- (Phaeothamnion wetherbeei SAG_119_79)
ATGATGGCATCGCAGACACCGGCGATGGAGCCGCTAATGTCCGGAAGCTC
CACGCCGACACAATATAACGCGGATGGAAGCACAACTCAACAAATGGCGG
TAAATCTTGCCCTTCTTGGTGGCCAGGTCAAGACACTGGGCGACAAGGCG
CTGACCTTCGCCCGCAGCCGCGTGACGGTCGGGCCCTTCCGGCCGCCGAA
GGAGTTCTTCGGCCTGGGCGAGGCCAAGGCCTTCGGCGCGCCCGCTGCCT
CGGAGCTCGCCCCTCGCCTCCGATTCAACCTACCGTATTTTTCGACAAAC
TACGGCGCCCTCTACCTGACCCTCGTCATGCTCTCCATCATTACCAGCCC
GCTCAGCCTCTGCAGCCTGGCCCTCCTCGCCGCCGGGTGGTACGCCGTCA
CACGCGCCCAGAGCAACCCGGAGGTCGACACCGTCGCGCTGGGACCGCTC
CAGGTCTCCAAGCCCGTCGCGTATGCCGGCATGCTCTGCGTGAGCGTGCT
ATGCGGGAGCCTGCTGCTCGGCAGCATGTTCTCATGGCCGCTGTGGGTTG
GCGCGGCAGCCGCGGCGGGCCACGCGGCGTTGCGGGAGCACGCCGAGCTG
GCGCCGCAGCCGCAGATGACGGGGGACTTTGACATCGACGCTGACCTGTC
TAAGTTCATCGCGGCGGGCCAGCAGGCATGA
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