mRNA_P-wetherbeei_contig8227.1.2 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig8227.1.2
Unique NamemRNA_P-wetherbeei_contig8227.1.2
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig8227.1.2 vs. uniprot
Match: A0A6U4LCY7_9STRA (Hypothetical protein n=2 Tax=Phaeomonas parva TaxID=124430 RepID=A0A6U4LCY7_9STRA)

HSP 1 Score: 86.7 bits (213), Expect = 6.150e-18
Identity = 50/117 (42.74%), Postives = 67/117 (57.26%), Query Frame = 3
Query:    3 GRTGEMAAQEPPEPPELEGYLMKLKQARRMLGLGLGSWNKRWFVVDSTTRQLEYFHSRADATSGAKLPAGAIPLDDVVAVRELDALAFTVEAKGSSARSLLLRCESKAQRTVWTQAL 353
            G   ++  +E P PP+LEGYL KLK   RM+     +WNKRWF V+  +  LEYF +R D   G + P G IPL+D+ +V E D+  F  +   S  R+L L+ ESKA  T W   L
Sbjct:   11 GLKRDLGDRERPSPPDLEGYLHKLKSNSRMI---FSAWNKRWFRVNRQSESLEYFRNRLDIGKGVQ-PGGVIPLEDIESVSEYDSENFQFQID-SRKRTLFLQAESKADLTGWLTEL 122          
BLAST of mRNA_P-wetherbeei_contig8227.1.2 vs. uniprot
Match: A0A7S2V129_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V129_9STRA)

HSP 1 Score: 84.3 bits (207), Expect = 1.380e-17
Identity = 45/114 (39.47%), Postives = 70/114 (61.40%), Query Frame = 3
Query:   33 PPEPPELEGYLMKLKQARRMLGLGLGSWNKRWFVVDSTTRQLEYFHSRADATSGAKLPAGAIPLDDVVAVRELDALAFTVEAKGSSARSLLLRCESKAQRTVWTQALGTFVAQQ 374
            PP+PP++EG L KLK ++ ++G    SW KR+F+V    R LEYF++++ +      P G+ PLD + AV + DAL+F +E+ G   RS LL+ ESK    +W  A   F+ ++
Sbjct:   35 PPDPPDIEGALSKLK-SKSLMG---SSWTKRYFIVKKERRTLEYFNTKSASQIRNAQPKGSTPLDSITAVNKYDALSFHLESTG---RSYLLKAESKMMAKLWVDAFTDFLREK 141          
BLAST of mRNA_P-wetherbeei_contig8227.1.2 vs. uniprot
Match: A0A7S2FQ65_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2FQ65_9STRA)

HSP 1 Score: 80.5 bits (197), Expect = 2.070e-16
Identity = 42/115 (36.52%), Postives = 67/115 (58.26%), Query Frame = 3
Query:   36 PEPPELEGYLMKLKQARRMLGLGLGSWNKRWFVVDSTTRQLEYFHSRADATSGAKLPAGAIPLDDVVAVRELDALAFTVEAKGSSARSLLLRCESKAQRTVWTQALGTFVAQQRV 380
            PEPP+LEG+L K+K     L   +G WN+RWF ++ + RQLEYF + AD     K P+G I L D+ + ++ D ++FTVE +    R+  LR +S  +   W   L  ++  +++
Sbjct:    4 PEPPDLEGWLHKMKHKPMPL---MGGWNRRWFRINQSKRQLEYFQTEADFQQH-KEPSGFIELYDISSAKDFDGVSFTVETRE---RTFFLRADSPVEALAWLTPLQEYIRLRKI 111          
BLAST of mRNA_P-wetherbeei_contig8227.1.2 vs. uniprot
Match: A0A6G0XUZ3_9STRA (PH domain-containing protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XUZ3_9STRA)

HSP 1 Score: 80.1 bits (196), Expect = 5.650e-16
Identity = 50/113 (44.25%), Postives = 61/113 (53.98%), Query Frame = 3
Query:   36 PEPPELEGYLMKLKQARRMLGLGL-GSWNKRWFVVDSTTRQLEYFHSRADATSGAKLPAGAIPLDDVVAVRELDALAFTVEAKGSSARSLLLRCESKAQRTVWTQALGTFVAQ 371
            P PPE+EGYL K+K   R  G+ L GSWNKRWF VD+  R+  Y  S    T        +I LDD+ AV   D   F VE+K    R   L+ ESKA   VW + L T+ AQ
Sbjct:    9 PTPPEIEGYLYKMK---RKSGINLTGSWNKRWFYVDTKRREFGYSQSNTQTTM-----KNSIFLDDITAVVSFDDYCFQVESK---TRKFFLKGESKAGAAVWVKTLETYRAQ 110          
BLAST of mRNA_P-wetherbeei_contig8227.1.2 vs. uniprot
Match: A0A6A3QEE5_9STRA (PH domain-containing protein n=8 Tax=Phytophthora TaxID=4783 RepID=A0A6A3QEE5_9STRA)

HSP 1 Score: 79.3 bits (194), Expect = 7.350e-15
Identity = 50/117 (42.74%), Postives = 64/117 (54.70%), Query Frame = 3
Query:    6 RTGEMAAQ-EPPEPPELEGYLMKLKQARRMLGLGLGSWNKRWFVVDSTTRQLEYFHSRADATSGAKLPAGAIPLDDVVAVRELDALAFTVEAKGSSARSLLLRCESKAQRTVWTQAL 353
            R G++  Q  PP PPE+EGYL KLK+  R L    G+WNKRWF VD   R+  Y  SR+ A      P  +I LDD+ AV + D   F VE++    R+  L  ESKA    W  +L
Sbjct:    4 RMGDLTLQPSPPIPPEIEGYLKKLKRKTRSLA---GNWNKRWFFVDPRRREFGYADSRSSA------PRSSIYLDDITAVVQFDDKHFQVESR---TRNFFLCGESKASTACWVTSL 108          
BLAST of mRNA_P-wetherbeei_contig8227.1.2 vs. uniprot
Match: A0A024UEW4_9STRA (PH domain-containing protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024UEW4_9STRA)

HSP 1 Score: 75.5 bits (184), Expect = 1.950e-14
Identity = 47/113 (41.59%), Postives = 62/113 (54.87%), Query Frame = 3
Query:   36 PEPPELEGYLMKLKQARRMLGLGL-GSWNKRWFVVDSTTRQLEYFHSRADATSGAKLPAGAIPLDDVVAVRELDALAFTVEAKGSSARSLLLRCESKAQRTVWTQALGTFVAQ 371
            P PPE+EGYL K+K   R  G+ L GSWNKRWF VD   ++  Y  S +       +   +I LDD+ A+   D   F VE+KG   R   L+ ESKA   VW + L T+ +Q
Sbjct:    9 PVPPEIEGYLYKMK---RKTGINLTGSWNKRWFYVDVKRKEFGYSVSHSQP-----IMKSSIFLDDITAIVVFDDYCFQVESKG---RKFFLKGESKAGAAVWVKTLETYRSQ 110          
BLAST of mRNA_P-wetherbeei_contig8227.1.2 vs. uniprot
Match: A0A329SWJ3_9STRA (PH domain-containing protein n=1 Tax=Phytophthora cactorum TaxID=29920 RepID=A0A329SWJ3_9STRA)

HSP 1 Score: 77.8 bits (190), Expect = 2.900e-14
Identity = 49/117 (41.88%), Postives = 63/117 (53.85%), Query Frame = 3
Query:    6 RTGEMAAQE-PPEPPELEGYLMKLKQARRMLGLGLGSWNKRWFVVDSTTRQLEYFHSRADATSGAKLPAGAIPLDDVVAVRELDALAFTVEAKGSSARSLLLRCESKAQRTVWTQAL 353
            R G++  Q  PP PPE+EGYL KLK+  R L    G+WNKRWF VD   R+  Y  +R  A      P  +I LDD+ AV + D   F VE++    R+  L  ESKA    W  +L
Sbjct:    3 RMGDLTLQPTPPVPPEIEGYLKKLKRKTRSLA---GNWNKRWFFVDPRRREFGYSDNRTSA------PRSSIFLDDITAVVQFDDTHFQVESR---TRNFFLCGESKASTACWVTSL 107          
BLAST of mRNA_P-wetherbeei_contig8227.1.2 vs. uniprot
Match: A0A2P4XD68_9STRA (PH domain-containing protein n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4XD68_9STRA)

HSP 1 Score: 77.0 bits (188), Expect = 5.280e-14
Identity = 49/117 (41.88%), Postives = 62/117 (52.99%), Query Frame = 3
Query:    6 RTGEMAAQE-PPEPPELEGYLMKLKQARRMLGLGLGSWNKRWFVVDSTTRQLEYFHSRADATSGAKLPAGAIPLDDVVAVRELDALAFTVEAKGSSARSLLLRCESKAQRTVWTQAL 353
            R G+M  Q  PP PPE+EGYL KLK+  R L    G+W KRWF VD   R+  Y  +R  A      P  +I LDD+ AV + D   F VE++    R+  L  ESKA    W  +L
Sbjct:    3 RIGDMTLQPTPPVPPEIEGYLKKLKRKTRSL---TGNWTKRWFFVDPRRREFGYSDNRTSA------PRSSIFLDDITAVMQFDDTHFQVESR---TRNFFLCGESKASTACWVTSL 107          
BLAST of mRNA_P-wetherbeei_contig8227.1.2 vs. uniprot
Match: A0A8J5IS73_9STRA (Uncharacterized protein n=1 Tax=Phytophthora aleatoria TaxID=2496075 RepID=A0A8J5IS73_9STRA)

HSP 1 Score: 77.8 bits (190), Expect = 6.100e-14
Identity = 49/117 (41.88%), Postives = 63/117 (53.85%), Query Frame = 3
Query:    6 RTGEMAAQE-PPEPPELEGYLMKLKQARRMLGLGLGSWNKRWFVVDSTTRQLEYFHSRADATSGAKLPAGAIPLDDVVAVRELDALAFTVEAKGSSARSLLLRCESKAQRTVWTQAL 353
            R G++  Q  PP PPE+EGYL KLK+  R L    G+WNKRWF VD   R+  Y  +R  A      P  +I LDD+ AV + D   F VE++    R+  L  ESKA    W  +L
Sbjct:  676 RMGDLTLQPTPPVPPEIEGYLKKLKRKTRSLA---GNWNKRWFFVDPRRREFGYSDNRTSA------PRSSIFLDDITAVVQFDDTHFQVESR---TRNFFLCGESKASTACWVTSL 780          
BLAST of mRNA_P-wetherbeei_contig8227.1.2 vs. uniprot
Match: A0A418B268_9STRA (PH domain-containing protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A418B268_9STRA)

HSP 1 Score: 75.5 bits (184), Expect = 6.480e-14
Identity = 47/113 (41.59%), Postives = 62/113 (54.87%), Query Frame = 3
Query:   36 PEPPELEGYLMKLKQARRMLGLGL-GSWNKRWFVVDSTTRQLEYFHSRADATSGAKLPAGAIPLDDVVAVRELDALAFTVEAKGSSARSLLLRCESKAQRTVWTQALGTFVAQ 371
            P PPE+EGYL K+K   R  G+ L GSWNKRWF VD   ++  Y  S +       +   +I LDD+ A+   D   F VE+KG   R   L+ ESKA   VW + L T+ +Q
Sbjct:   28 PVPPEIEGYLYKMK---RKTGINLTGSWNKRWFYVDVKRKEFGYSVSHSQP-----IMKSSIFLDDITAIVVFDDYCFQVESKG---RKFFLKGESKAGAAVWVKTLETYRSQ 129          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig8227.1.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6U4LCY7_9STRA6.150e-1842.74Hypothetical protein n=2 Tax=Phaeomonas parva TaxI... [more]
A0A7S2V129_9STRA1.380e-1739.47Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa... [more]
A0A7S2FQ65_9STRA2.070e-1636.52Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A6G0XUZ3_9STRA5.650e-1644.25PH domain-containing protein n=1 Tax=Aphanomyces e... [more]
A0A6A3QEE5_9STRA7.350e-1542.74PH domain-containing protein n=8 Tax=Phytophthora ... [more]
A0A024UEW4_9STRA1.950e-1441.59PH domain-containing protein n=1 Tax=Aphanomyces i... [more]
A0A329SWJ3_9STRA2.900e-1441.88PH domain-containing protein n=1 Tax=Phytophthora ... [more]
A0A2P4XD68_9STRA5.280e-1441.88PH domain-containing protein n=1 Tax=Phytophthora ... [more]
A0A8J5IS73_9STRA6.100e-1441.88Uncharacterized protein n=1 Tax=Phytophthora aleat... [more]
A0A418B268_9STRA6.480e-1441.59PH domain-containing protein n=1 Tax=Aphanomyces i... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig8227contigP-wetherbeei_contig8227:2017..2615 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog157072.XP_008866262.1
PFAMsPH
Model size428
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons2
Evalue2.73e-15
EggNOG OGs2BIK4@1|root,2S1EG@2759|Eukaryota
DescriptionPleckstrin homology domain.
Cds size411
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187027.6637514-CDS-P-wetherbeei_contig8227:2016..22341683187027.6637514-CDS-P-wetherbeei_contig8227:2016..2234Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig8227 2017..2234 -
1683187027.6726446-CDS-P-wetherbeei_contig8227:2405..25981683187027.6726446-CDS-P-wetherbeei_contig8227:2405..2598Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig8227 2406..2598 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187027.6807337-UTR-P-wetherbeei_contig8227:2598..26151683187027.6807337-UTR-P-wetherbeei_contig8227:2598..2615Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig8227 2599..2615 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig8227.1.2prot_P-wetherbeei_contig8227.1.2Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig8227 2017..2598 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig8227.1.2

>prot_P-wetherbeei_contig8227.1.2 ID=prot_P-wetherbeei_contig8227.1.2|Name=mRNA_P-wetherbeei_contig8227.1.2|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=137bp
MAAQEPPEPPELEGYLMKLKQARRMLGLGLGSWNKRWFVVDSTTRQLEYF
HSRADATSGAKLPAGAIPLDDVVAVRELDALAFTVEAKGSSARSLLLRCE
SKAQRTVWTQALGTFVAQQRVRFRAYRRSTSSPLAR*
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mRNA from alignment at P-wetherbeei_contig8227:2017..2615-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig8227.1.2 ID=mRNA_P-wetherbeei_contig8227.1.2|Name=mRNA_P-wetherbeei_contig8227.1.2|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=599bp|location=Sequence derived from alignment at P-wetherbeei_contig8227:2017..2615- (Phaeothamnion wetherbeei SAG_119_79)
CGGGACGCACAGGGGAAATGGCTGCCCAGGAGCCCCCAGAGCCCCCAGAA CTAGAGGGGTACCTGATGAAGCTGAAGCAGGCTCGCCGGATGCTTGGGCT GGGGCTGGGCAGCTGGAACAAGCGCTGGTTCGTCGTTGACTCCACCACGA GGCAGCTCGAATATTTCCACTCTCGCGCGGACGCCACCAGCGGCGCCAAG CTCCCAGCAGGTGAAATTGCTATCCGGCCGTAACTTTTGTACGCGATACT TTCTCAGCTTTCAACGAGAGCCATAGCCCATACGGCACAACTAAAATACT CTTCTCCTCGCGCAAGTAACCTTCGCGGCCTCCCTTTACCATAACCCGGC GTTCCCCAAACCGCCGTCAACATTTAAAAAGGCGCTATCCCGTTGGATGA CGTGGTAGCGGTAAGGGAGCTCGACGCGCTCGCCTTCACCGTGGAGGCAA AGGGCAGCAGCGCGCGCTCCCTCCTCCTGCGCTGCGAGAGCAAGGCGCAG CGGACGGTCTGGACGCAGGCGCTGGGCACCTTTGTGGCGCAGCAGCGGGT GCGTTTTAGAGCATATCGGAGGAGTACATCTTCTCCACTTGCCCGCTAA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig8227:2017..2615-

>mRNA_P-wetherbeei_contig8227.1.2 ID=mRNA_P-wetherbeei_contig8227.1.2|Name=mRNA_P-wetherbeei_contig8227.1.2|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=411bp|location=Sequence derived from alignment at P-wetherbeei_contig8227:2017..2615- (Phaeothamnion wetherbeei SAG_119_79)
ATGGCTGCCCAGGAGCCCCCAGAGCCCCCAGAACTAGAGGGGTACCTGAT
GAAGCTGAAGCAGGCTCGCCGGATGCTTGGGCTGGGGCTGGGCAGCTGGA
ACAAGCGCTGGTTCGTCGTTGACTCCACCACGAGGCAGCTCGAATATTTC
CACTCTCGCGCGGACGCCACCAGCGGCGCCAAGCTCCCAGCAGGCGCTAT
CCCGTTGGATGACGTGGTAGCGGTAAGGGAGCTCGACGCGCTCGCCTTCA
CCGTGGAGGCAAAGGGCAGCAGCGCGCGCTCCCTCCTCCTGCGCTGCGAG
AGCAAGGCGCAGCGGACGGTCTGGACGCAGGCGCTGGGCACCTTTGTGGC
GCAGCAGCGGGTGCGTTTTAGAGCATATCGGAGGAGTACATCTTCTCCAC
TTGCCCGCTAA
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