mRNA_P-wetherbeei_contig8224.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig8224.1.1
Unique NamemRNA_P-wetherbeei_contig8224.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig8224.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig8224contigP-wetherbeei_contig8224:2..1882 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1530
Hectar predicted targeting categoryother localisation
Exons2
Cds size1236
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187027.5868354-UTR-P-wetherbeei_contig8224:1..811683187027.5868354-UTR-P-wetherbeei_contig8224:1..81Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig8224 2..81 +
1683187027.6163487-UTR-P-wetherbeei_contig8224:1668..18821683187027.6163487-UTR-P-wetherbeei_contig8224:1668..1882Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig8224 1669..1882 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187027.5992494-CDS-P-wetherbeei_contig8224:81..5941683187027.5992494-CDS-P-wetherbeei_contig8224:81..594Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig8224 82..594 +
1683187027.607934-CDS-P-wetherbeei_contig8224:945..16681683187027.607934-CDS-P-wetherbeei_contig8224:945..1668Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig8224 946..1668 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig8224.1.1prot_P-wetherbeei_contig8224.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig8224 82..1668 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig8224.1.1

>prot_P-wetherbeei_contig8224.1.1 ID=prot_P-wetherbeei_contig8224.1.1|Name=mRNA_P-wetherbeei_contig8224.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=412bp
MEDLQLESACRGHLEGLNIKALCQLEHERTAAGCPGAGAGAAAALATNAG
GVRSSSGITGDKLGGDARGVSLGGCAGVKGMVAEYSSLPDIFTEHIYPEH
FGMRKLMEERGDMAHMLRAGAHYSKQSVRIVAMSRNATAADNAPPFEVDD
FKTGMDKDTKAEGANGRMRDEARAMCPAYNTLRTWQQWRSPTASPPPGPS
CEGTNPADAWWGDVQAAVVCPQWAGRRHRQLAAAAAGGAAEHAASAYGGF
ERADDGGFIGSSWNGEGGWDGNGRRGGDDDGGDGSDSGGDGDSDSFRSDS
GGSGNGWEMAGADAGGRSSDSWAESGEMFGLGSHWGSRSGDSGNGADGDN
IAGAVAGCGAVGAAPDRKGVVERTGEEAVASSRERLRDGAAAAAAAVGSS
AGRGSATAVGR*
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mRNA from alignment at P-wetherbeei_contig8224:2..1882+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig8224.1.1 ID=mRNA_P-wetherbeei_contig8224.1.1|Name=mRNA_P-wetherbeei_contig8224.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1881bp|location=Sequence derived from alignment at P-wetherbeei_contig8224:2..1882+ (Phaeothamnion wetherbeei SAG_119_79)
TTTCTGAAACCGGCTGCCGCGTCGCACCGCCGAAACAAACCATCCATCAT
CGACAGGGGAAGCCGCTGCAGGAGTGGGAGATGGAGGACCTCCAGCTCGA
GTCGGCCTGCCGCGGCCACCTCGAGGGCTTAAACATCAAGGCGCTTTGCC
AGCTGGAGCACGAACGAACCGCCGCCGGCTGCCCAGGGGCCGGTGCTGGC
GCTGCCGCCGCACTAGCCACCAACGCCGGTGGCGTCCGCTCATCCAGCGG
CATTACCGGTGACAAGCTCGGCGGCGACGCACGGGGGGTGTCACTGGGCG
GCTGCGCGGGCGTGAAGGGCATGGTGGCGGAGTACTCCAGCCTGCCGGAC
ATCTTCACCGAGCACATCTACCCGGAACACTTCGGGATGCGCAAGCTGAT
GGAGGAGCGTGGCGACATGGCGCACATGCTGCGGGCGGGCGCGCACTACA
GCAAACAATCGGTGCGGATCGTTGCGATGTCGCGGAACGCGACGGCAGCT
GACAATGCGCCGCCGTTTGAGGTGGACGACTTCAAGACGGGGATGGACAA
GGATACCAAGGCGGAGGGCGCCAATGGCCGCATGCGGGACGAGGTGAGTC
TTTCAAATAATGGGCAACTGTTTTGTTGAAAATGGATTATTTTTCGTTCG
CGTTTCTTGAGGTTTCATTTTTTGGATGCCGAAAGTATGAAGTGTTCTTC
CACTGTTTGGAGCCGACGTTTTCGGAAGAGCTGGATAAGACAAGGATGGC
GGGCGCCCGCGGTCGCATGCAGGAGAAAGTGCTGTGCTTTTTATTGGGTA
TGTCGAAACTAAGTAATGGAGATGGATTTCACTGGTCCTGCGAACCTTCG
CTGGTTCCGGAATCGCTAGACCAGATGTGTCTGCATGAAACTTTCTGGCA
ACGCTCTTTCTTTCCAAAATATCTTTTTTTCCTCCTTTATTCAGGCCCGC
GCCATGTGCCCCGCCTACAACACGCTGCGGACGTGGCAGCAGTGGCGCTC
GCCGACGGCGTCGCCGCCGCCGGGCCCGTCCTGCGAAGGGACGAACCCCG
CCGACGCATGGTGGGGCGACGTCCAGGCGGCGGTGGTCTGCCCACAGTGG
GCCGGCCGCCGCCACCGCCAGCTGGCGGCGGCCGCCGCGGGTGGCGCAGC
GGAACACGCCGCTTCTGCCTACGGTGGCTTTGAGAGGGCCGACGACGGCG
GTTTTATCGGCAGCAGCTGGAACGGCGAGGGCGGCTGGGACGGAAACGGC
CGCCGCGGTGGCGACGACGATGGCGGCGATGGCAGCGACAGCGGTGGCGA
TGGCGACAGTGACAGTTTCCGTAGCGACTCCGGCGGCAGCGGCAACGGCT
GGGAGATGGCCGGGGCCGACGCTGGGGGGCGGAGCAGCGATTCGTGGGCG
GAGAGCGGTGAGATGTTTGGCCTCGGCAGCCATTGGGGCAGCCGTTCTGG
CGACAGCGGCAACGGCGCCGACGGCGACAACATCGCCGGTGCTGTTGCTG
GCTGCGGTGCCGTCGGCGCCGCTCCTGACCGAAAAGGTGTCGTGGAACGG
ACGGGGGAAGAGGCGGTCGCGAGCAGCCGAGAAAGACTGAGAGATGGCGC
CGCCGCCGCAGCAGCTGCAGTGGGGTCCAGCGCCGGCCGCGGCAGCGCGA
CGGCTGTGGGGAGGTGACGATGGCGAAAACGGCCGGGAGAGAAAGGATAG
TCTCAGCACGGCAGCGGAGACGAACGGACGCAGTACGCGCCTTTGACTGC
AGGTGCAGCAGGTGTATGGGGCCGTTGGTGGTCCTTTTTTCGTAATTTCG
TAAGGCAAATTGATTGATGTGGTTTTGAATAGCAGTGAAGACTAGTAAGA
GAGACGAGTTTAAAAGTCATTGTAAAAGTCA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig8224:2..1882+

>mRNA_P-wetherbeei_contig8224.1.1 ID=mRNA_P-wetherbeei_contig8224.1.1|Name=mRNA_P-wetherbeei_contig8224.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1236bp|location=Sequence derived from alignment at P-wetherbeei_contig8224:2..1882+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGAGGACCTCCAGCTCGAGTCGGCCTGCCGCGGCCACCTCGAGGGCTT
AAACATCAAGGCGCTTTGCCAGCTGGAGCACGAACGAACCGCCGCCGGCT
GCCCAGGGGCCGGTGCTGGCGCTGCCGCCGCACTAGCCACCAACGCCGGT
GGCGTCCGCTCATCCAGCGGCATTACCGGTGACAAGCTCGGCGGCGACGC
ACGGGGGGTGTCACTGGGCGGCTGCGCGGGCGTGAAGGGCATGGTGGCGG
AGTACTCCAGCCTGCCGGACATCTTCACCGAGCACATCTACCCGGAACAC
TTCGGGATGCGCAAGCTGATGGAGGAGCGTGGCGACATGGCGCACATGCT
GCGGGCGGGCGCGCACTACAGCAAACAATCGGTGCGGATCGTTGCGATGT
CGCGGAACGCGACGGCAGCTGACAATGCGCCGCCGTTTGAGGTGGACGAC
TTCAAGACGGGGATGGACAAGGATACCAAGGCGGAGGGCGCCAATGGCCG
CATGCGGGACGAGGCCCGCGCCATGTGCCCCGCCTACAACACGCTGCGGA
CGTGGCAGCAGTGGCGCTCGCCGACGGCGTCGCCGCCGCCGGGCCCGTCC
TGCGAAGGGACGAACCCCGCCGACGCATGGTGGGGCGACGTCCAGGCGGC
GGTGGTCTGCCCACAGTGGGCCGGCCGCCGCCACCGCCAGCTGGCGGCGG
CCGCCGCGGGTGGCGCAGCGGAACACGCCGCTTCTGCCTACGGTGGCTTT
GAGAGGGCCGACGACGGCGGTTTTATCGGCAGCAGCTGGAACGGCGAGGG
CGGCTGGGACGGAAACGGCCGCCGCGGTGGCGACGACGATGGCGGCGATG
GCAGCGACAGCGGTGGCGATGGCGACAGTGACAGTTTCCGTAGCGACTCC
GGCGGCAGCGGCAACGGCTGGGAGATGGCCGGGGCCGACGCTGGGGGGCG
GAGCAGCGATTCGTGGGCGGAGAGCGGTGAGATGTTTGGCCTCGGCAGCC
ATTGGGGCAGCCGTTCTGGCGACAGCGGCAACGGCGCCGACGGCGACAAC
ATCGCCGGTGCTGTTGCTGGCTGCGGTGCCGTCGGCGCCGCTCCTGACCG
AAAAGGTGTCGTGGAACGGACGGGGGAAGAGGCGGTCGCGAGCAGCCGAG
AAAGACTGAGAGATGGCGCCGCCGCCGCAGCAGCTGCAGTGGGGTCCAGC
GCCGGCCGCGGCAGCGCGACGGCTGTGGGGAGGTGA
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