mRNA_P-wetherbeei_contig8216.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig8216.2.1
Unique NamemRNA_P-wetherbeei_contig8216.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig8216.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig8216contigP-wetherbeei_contig8216:1946..2639 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size694
Hectar predicted targeting categoryother localisation
Exons1
Cds size390
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187026.8642292-UTR-P-wetherbeei_contig8216:1945..20611683187026.8642292-UTR-P-wetherbeei_contig8216:1945..2061Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig8216 1946..2061 -
1683187026.8841586-UTR-P-wetherbeei_contig8216:2451..26391683187026.8841586-UTR-P-wetherbeei_contig8216:2451..2639Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig8216 2452..2639 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187026.874569-CDS-P-wetherbeei_contig8216:2061..24511683187026.874569-CDS-P-wetherbeei_contig8216:2061..2451Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig8216 2062..2451 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig8216.2.1prot_P-wetherbeei_contig8216.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig8216 2062..2451 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig8216.2.1

>prot_P-wetherbeei_contig8216.2.1 ID=prot_P-wetherbeei_contig8216.2.1|Name=mRNA_P-wetherbeei_contig8216.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=130bp
MACISCFGYFRREKERILVSRSWAMVPATSSPLAHRLPKKDERGVSFSSA
PMAGWLGAETDICPTKRFTSARRDVGGSDAKPRQRQGGSAHGKVHKGEGI
SATVQRWQAAAAGFCLPAGAAVDYPRAVQ*
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mRNA from alignment at P-wetherbeei_contig8216:1946..2639-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig8216.2.1 ID=mRNA_P-wetherbeei_contig8216.2.1|Name=mRNA_P-wetherbeei_contig8216.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=694bp|location=Sequence derived from alignment at P-wetherbeei_contig8216:1946..2639- (Phaeothamnion wetherbeei SAG_119_79)
GCTTGCAGCCTTGCAAGGCAGGGCTCGACGGAGGGAGGTATTGCTGCAGG
AACGGTGGCGATGAGGGCCGCAGCCATCACAAAGCAGGCAAGCAATGAGG
GCCGATTGAGATTTCATTCTCTTCCTCGTCGCTCCCGAAATAGTGGTTTT
AATGCCTCCTGCTTGTCTGTTGCTACTGACCCTTATGAATGGCGTGCATT
TCTTGTTTTGGGTATTTCCGGCGTGAAAAGGAAAGGATCCTAGTGAGTCG
ATCATGGGCGATGGTCCCAGCCACCTCCTCTCCGCTCGCTCATCGATTAC
CTAAAAAGGACGAGCGCGGTGTTTCCTTTTCGTCGGCTCCTATGGCTGGC
TGGCTGGGTGCCGAGACGGACATCTGTCCGACCAAGCGGTTCACATCGGC
GAGACGAGATGTTGGAGGAAGCGACGCAAAGCCGCGGCAGCGCCAAGGAG
GAAGCGCCCATGGAAAGGTGCACAAGGGTGAAGGAATTTCGGCGACAGTT
CAACGCTGGCAGGCTGCGGCGGCCGGTTTTTGTTTGCCTGCTGGCGCAGC
GGTGGATTATCCACGGGCTGTTCAGTAGAGGCGGTGGCGAGGCTGGTGCG
GCAGTCCGCTCTCCTTGATTGGCTTGTATCCAAGATGGGGAAGCGGTGTA
GGAAGCAAAGTTTATAACGTCACGGAAATAAAGGAGAATGGTAC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig8216:1946..2639-

>mRNA_P-wetherbeei_contig8216.2.1 ID=mRNA_P-wetherbeei_contig8216.2.1|Name=mRNA_P-wetherbeei_contig8216.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=390bp|location=Sequence derived from alignment at P-wetherbeei_contig8216:1946..2639- (Phaeothamnion wetherbeei SAG_119_79)
ATGGCGTGCATTTCTTGTTTTGGGTATTTCCGGCGTGAAAAGGAAAGGAT
CCTAGTGAGTCGATCATGGGCGATGGTCCCAGCCACCTCCTCTCCGCTCG
CTCATCGATTACCTAAAAAGGACGAGCGCGGTGTTTCCTTTTCGTCGGCT
CCTATGGCTGGCTGGCTGGGTGCCGAGACGGACATCTGTCCGACCAAGCG
GTTCACATCGGCGAGACGAGATGTTGGAGGAAGCGACGCAAAGCCGCGGC
AGCGCCAAGGAGGAAGCGCCCATGGAAAGGTGCACAAGGGTGAAGGAATT
TCGGCGACAGTTCAACGCTGGCAGGCTGCGGCGGCCGGTTTTTGTTTGCC
TGCTGGCGCAGCGGTGGATTATCCACGGGCTGTTCAGTAG
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