mRNA_P-wetherbeei_contig8203.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig8203.1.1
Unique NamemRNA_P-wetherbeei_contig8203.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig8203.1.1 vs. uniprot
Match: A0A7S4CR92_9EUGL (Hypothetical protein (Fragment) n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A7S4CR92_9EUGL)

HSP 1 Score: 63.5 bits (153), Expect = 2.030e-7
Identity = 66/240 (27.50%), Postives = 94/240 (39.17%), Query Frame = 3 
Query:  408 EGTRIRIISAPTDMRTTWTEGRNMLAKAAYAWELERGSGFGYWHLSDEDVILTYTNALAPALGGAAPYGDPFVAYE--QLCTAAGAAMMLPHGIVRAHNANPPSAACTHRLTVRDEASLMQAAGAALPGRDGDGGPR-GHVDTEWKTSLQPVAAFDACFNTMHRAAVPLLLPYVGDLDDFSWSLSQRILWSL-LQCFPGNPSSAVVVNTDILMTRPVNQHSQYPRGRNRTAEDMAIAKNF 1115
            E   +  I AP    +TWTEGRNM+A A    E   G    YW L+D D+       L            P  +    Q C A   + +L                       RDE       GA +  ++    PR GH   ++          DA F  +HRAAVP+LLPY   L++FSW  SQ IL+ + + C P    +  ++        P   HS YP+  +     +A+ + F
Sbjct:   32 EARHVVCIYAP---NSTWTEGRNMIAAAVLRHEQSSGKAHKYWVLADGDIAQLRCGWLDDFWSSEVQRHSPTASLSEGQYCMARVVSYLL-----------------------RDEVQ-----GAQIYVKE----PRQGHTPFQFAYR----DCMDADFVALHRAAVPVLLPYAEVLEEFSWWESQAILFRVAMACLPHGGVAVPILPPGT--QEPNTAHSTYPKATDDFRRLVALKRIF 230
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BLAST of mRNA_P-wetherbeei_contig8203.1.1 vs. uniprot
Match: A0A7S4FNE9_9EUGL (Hypothetical protein n=3 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A7S4FNE9_9EUGL)

HSP 1 Score: 60.8 bits (146), Expect = 2.450e-6
Identity = 65/240 (27.08%), Postives = 89/240 (37.08%), Query Frame = 3 
Query:  408 EGTRIRIISAPTDMRTTWTEGRNMLAKAAYAWELERGSGFGYWHLSDEDVILTYTNALAPALGGAAPYGDPFVAYE--QLCTAAGAAMMLPHGIVRAHNANPPSAACTHRLTVRDEASLMQAAGAALPGRDGDGGPRGHVDTE-WKTSLQPVAAFDACFNTMHRAAVPLLLPYVGDLDDFSWSLSQRILWSL-LQCFPGNPSSAVVVNTDILMTRPVNQHSQYPRGRNRTAEDMAIAKNF 1115
            E   +  I AP    +TWTEGRNM+A A    E   G    YW L+D D+       L            P  +    Q C A   + +L                       RDE    Q             GP G    + W          DA F  +HRAAVP+LLPY   L++FSW  SQ IL+ + + C P    +  ++        P   HS YP+  +     +A+ + F
Sbjct:   35 EARHVVCIYAP---NSTWTEGRNMIAAAVLRHEQSSGKAHKYWVLADGDIAQLRCGWLDDFWSSEVQRHSPTASLSEGQYCMARVVSYLL-----------------------RDEVQWAQIYLKCS-------GPPGLSRFQFWYCDCM-----DADFVALHRAAVPVLLPYAEVLEEFSWWESQAILFRVAMACLPHGGVAVPILPPGT--QEPNTAHSTYPKATDDFRRLVALKRIF 234
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig8203.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A7S4CR92_9EUGL2.030e-727.50Hypothetical protein (Fragment) n=1 Tax=Eutreptiel... [more]
A0A7S4FNE9_9EUGL2.450e-627.08Hypothetical protein n=3 Tax=Eutreptiella gymnasti... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig8203contigP-wetherbeei_contig8203:2..2007 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1574
Hectar predicted targeting categorysignal peptide
Exons3
Cds size1239
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187025.9017842-UTR-P-wetherbeei_contig8203:1..661683187025.9017842-UTR-P-wetherbeei_contig8203:1..66Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig8203 2..66 +
1683187025.9349546-UTR-P-wetherbeei_contig8203:1737..20071683187025.9349546-UTR-P-wetherbeei_contig8203:1737..2007Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig8203 1738..2007 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187025.9106119-CDS-P-wetherbeei_contig8203:66..5241683187025.9106119-CDS-P-wetherbeei_contig8203:66..524Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig8203 67..524 +
1683187025.9190867-CDS-P-wetherbeei_contig8203:665..11461683187025.9190867-CDS-P-wetherbeei_contig8203:665..1146Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig8203 666..1146 +
1683187025.9270778-CDS-P-wetherbeei_contig8203:1437..17371683187025.9270778-CDS-P-wetherbeei_contig8203:1437..1737Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig8203 1438..1737 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig8203.1.1prot_P-wetherbeei_contig8203.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig8203 67..1737 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig8203.1.1

>prot_P-wetherbeei_contig8203.1.1 ID=prot_P-wetherbeei_contig8203.1.1|Name=mRNA_P-wetherbeei_contig8203.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=413bp
MASQGPRFGIASLRPGFTVLAILSVLAGFVLIRALAFRNSADAELEVRVT
PSVSENHLEDGDGAEHLYLVQIGHAATFHEWTTRFTKRLNSTASLLVLWY
DRRESSPTLAVTKEEGTRIRIISAPTDMRTTWTEGRNMLAKAAYAWELER
GSGFGYWHLSDEDVILTYTNALAPALGGAAPYGDPFVAYEQLCTAAGAAM
MLPHGIVRAHNANPPSAACTHRLTVRDEASLMQAAGAALPGRDGDGGPRG
HVDTEWKTSLQPVAAFDACFNTMHRAAVPLLLPYVGDLDDFSWSLSQRIL
WSLLQCFPGNPSSAVVVNTDILMTRPVNQHSQYPRGRNRTAEDMAIAKNF
AAAVAHGVIHVEAVPWDAGYAVCPDDANLANEEWPGDRWRLDPSFLVCLE
ANRPRWKALVVD*
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mRNA from alignment at P-wetherbeei_contig8203:2..2007+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig8203.1.1 ID=mRNA_P-wetherbeei_contig8203.1.1|Name=mRNA_P-wetherbeei_contig8203.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=2006bp|location=Sequence derived from alignment at P-wetherbeei_contig8203:2..2007+ (Phaeothamnion wetherbeei SAG_119_79)
TCATTCCGTGCTCCTGATTGGCTAAGAAAGTTGCTGGCAATTATTAGTGC
GTAATTCAGTCGAAGATGGCTAGTCAAGGGCCAAGGTTTGGAATCGCCTC
GCTGAGGCCAGGATTCACTGTGCTGGCAATCTTAAGCGTGCTAGCGGGCT
TTGTGCTCATTCGCGCCCTGGCGTTCCGGAACTCGGCGGATGCAGAGCTC
GAAGTTCGTGTAACTCCATCTGTGTCTGAAAATCACCTAGAAGATGGCGA
TGGAGCAGAACACCTCTACCTCGTCCAAATTGGCCATGCCGCGACGTTTC
ACGAATGGACAACGAGGTTTACGAAACGGCTCAATTCCACAGCAAGCTTG
TTGGTGCTCTGGTATGATCGCCGGGAGAGCTCTCCCACGCTTGCCGTGAC
CAAGGAGGAAGGGACGCGAATACGCATCATCAGCGCTCCCACCGATATGC
GCACCACGTGGACAGAAGGCCGCAACATGTTGGCGAAAGCAGCGTACGCT
TGGGAGCTGGAGAGGGGAAGCGGGTAAGAATGTTCACTTTCCTTACAGGA
GGTTTTCTGGTTTGCGTCCACTTAACTTGTTCCGCTCGTTTCCATGTGCG
GTCTAACGACAACAATTGTTCTACCGGTGTCTCAGCAAAGTCGCGACACC
TCGTTGTCTGACAGGTTTGGGTACTGGCACCTCTCTGACGAAGACGTTAT
CCTGACGTACACAAATGCCCTGGCTCCTGCCCTGGGCGGGGCGGCACCTT
ATGGCGATCCTTTTGTCGCATACGAGCAGCTATGTACGGCTGCCGGCGCG
GCAATGATGCTGCCGCATGGAATAGTCCGCGCTCACAATGCGAACCCGCC
GTCTGCAGCCTGCACACACCGCTTGACGGTCCGCGATGAAGCGTCTCTTA
TGCAGGCTGCAGGCGCTGCATTGCCGGGCCGTGACGGCGACGGTGGCCCC
CGCGGCCATGTCGATACAGAGTGGAAAACATCCTTGCAGCCGGTGGCGGC
TTTTGACGCCTGCTTCAACACGATGCATCGCGCCGCAGTGCCGCTGCTGC
TGCCATACGTTGGCGACCTGGACGACTTCAGCTGGTCCCTCTCGCAGCGC
ATCCTCTGGTCACTGCTGCAATGCTTTCCGGGCAACCCGTCGTCGGTGAG
CGGCAGGGAACGGGATTTCGAGGCTGTAAAGACGCTTTACAAGTAGAGGA
GTCGGACGAGCGTATGGCTTTCCGAGCCAGCTCTTGACGTGTGCATGAGG
TCTTGTGACCGCTGCATCAGAATGCGCTTGGCTTTGTCTTTCTTTGTAAT
CAGTGGGAAAAGGGCCGTCCAAAGAAGCCTTTCCCTATATTGTTCTACAT
TTCTCTTATGCCATGTCAGCCTGCCTGGCCTTGCTTGCTTCTTCGGCGCA
ACAAACGCGGCCACCCTAAACCGGTAACGCAAGCAGGCCGTCGTGGTGAA
CACGGACATCCTAATGACACGCCCCGTGAACCAGCACTCGCAGTATCCGC
GTGGGCGCAACCGAACGGCGGAGGACATGGCCATAGCGAAGAATTTCGCA
GCCGCGGTCGCTCACGGCGTGATTCACGTCGAGGCGGTGCCGTGGGATGC
GGGATACGCGGTTTGCCCCGACGACGCAAACTTGGCCAACGAAGAATGGC
CCGGAGACAGGTGGCGGCTCGACCCCTCCTTTCTCGTTTGTCTCGAGGCC
AACCGCCCACGCTGGAAAGCCTTGGTAGTTGACTAGGGAGTTTGGGTGTC
TAGAAGGTTTGTCCTAAGGGCATGTAACACTCAGAGACCCCAAAAGTGTA
CATATATCGAGAAGCTGACGTCAAGCAAAGTTCGTCTTTATGGGAGCTGG
CAAATTTGCTCTTTTCATCAGACGGAAACATCATGACAATCAAAGCCAAG
GGGCTGAAGGAACTGGTGCCGCAGTTTTACAAGGCCGCCAACTACATGAC
ATTTGGCCCCCTGAAATCAATTTTAACGCGGTTGGATGGGCGGAGTTTGG
CTTCAG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig8203:2..2007+

>mRNA_P-wetherbeei_contig8203.1.1 ID=mRNA_P-wetherbeei_contig8203.1.1|Name=mRNA_P-wetherbeei_contig8203.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1239bp|location=Sequence derived from alignment at P-wetherbeei_contig8203:2..2007+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGCTAGTCAAGGGCCAAGGTTTGGAATCGCCTCGCTGAGGCCAGGATT
CACTGTGCTGGCAATCTTAAGCGTGCTAGCGGGCTTTGTGCTCATTCGCG
CCCTGGCGTTCCGGAACTCGGCGGATGCAGAGCTCGAAGTTCGTGTAACT
CCATCTGTGTCTGAAAATCACCTAGAAGATGGCGATGGAGCAGAACACCT
CTACCTCGTCCAAATTGGCCATGCCGCGACGTTTCACGAATGGACAACGA
GGTTTACGAAACGGCTCAATTCCACAGCAAGCTTGTTGGTGCTCTGGTAT
GATCGCCGGGAGAGCTCTCCCACGCTTGCCGTGACCAAGGAGGAAGGGAC
GCGAATACGCATCATCAGCGCTCCCACCGATATGCGCACCACGTGGACAG
AAGGCCGCAACATGTTGGCGAAAGCAGCGTACGCTTGGGAGCTGGAGAGG
GGAAGCGGGTTTGGGTACTGGCACCTCTCTGACGAAGACGTTATCCTGAC
GTACACAAATGCCCTGGCTCCTGCCCTGGGCGGGGCGGCACCTTATGGCG
ATCCTTTTGTCGCATACGAGCAGCTATGTACGGCTGCCGGCGCGGCAATG
ATGCTGCCGCATGGAATAGTCCGCGCTCACAATGCGAACCCGCCGTCTGC
AGCCTGCACACACCGCTTGACGGTCCGCGATGAAGCGTCTCTTATGCAGG
CTGCAGGCGCTGCATTGCCGGGCCGTGACGGCGACGGTGGCCCCCGCGGC
CATGTCGATACAGAGTGGAAAACATCCTTGCAGCCGGTGGCGGCTTTTGA
CGCCTGCTTCAACACGATGCATCGCGCCGCAGTGCCGCTGCTGCTGCCAT
ACGTTGGCGACCTGGACGACTTCAGCTGGTCCCTCTCGCAGCGCATCCTC
TGGTCACTGCTGCAATGCTTTCCGGGCAACCCGTCGTCGGCCGTCGTGGT
GAACACGGACATCCTAATGACACGCCCCGTGAACCAGCACTCGCAGTATC
CGCGTGGGCGCAACCGAACGGCGGAGGACATGGCCATAGCGAAGAATTTC
GCAGCCGCGGTCGCTCACGGCGTGATTCACGTCGAGGCGGTGCCGTGGGA
TGCGGGATACGCGGTTTGCCCCGACGACGCAAACTTGGCCAACGAAGAAT
GGCCCGGAGACAGGTGGCGGCTCGACCCCTCCTTTCTCGTTTGTCTCGAG
GCCAACCGCCCACGCTGGAAAGCCTTGGTAGTTGACTAG
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