mRNA_P-wetherbeei_contig12947.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig12947.1.1
Unique NamemRNA_P-wetherbeei_contig12947.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig12947.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig12947contigP-wetherbeei_contig12947:3..1242 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size902
Hectar predicted targeting categoryother localisation
Exons2
Cds size777
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185967.4725158-CDS-P-wetherbeei_contig12947:2..5781683185967.4725158-CDS-P-wetherbeei_contig12947:2..578Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig12947 3..578 -
1683185967.4817955-CDS-P-wetherbeei_contig12947:917..11181683185967.4817955-CDS-P-wetherbeei_contig12947:917..1118Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig12947 918..1118 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185967.4904869-UTR-P-wetherbeei_contig12947:1118..12421683185967.4904869-UTR-P-wetherbeei_contig12947:1118..1242Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig12947 1119..1242 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig12947.1.1prot_P-wetherbeei_contig12947.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig12947 3..1118 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig12947.1.1

>prot_P-wetherbeei_contig12947.1.1 ID=prot_P-wetherbeei_contig12947.1.1|Name=mRNA_P-wetherbeei_contig12947.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=259bp
MVKKRSRSAERWDGLPWKAVDVELEADDGLHEESPGEDERFLLFSLEEID
GAAYAYQKNENGAATVTAKRAKDVSDAADEGEMDAMEAEPSVERSRTRRK
KHKAPELSAASAIDGDTDDVAAEFSEESRHGEAAPPADAGTSTDSMSDYD
GGGAAAPDGAAVKGRALSRRARKRAKRRAAAVAQNADPDGSAGETAEAAG
IVAASAPAAVGVETAAAMYNNASDGDGDGDDADAAVAVPSSPSSQSPWEL
SEADSAAMM
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mRNA from alignment at P-wetherbeei_contig12947:3..1242-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig12947.1.1 ID=mRNA_P-wetherbeei_contig12947.1.1|Name=mRNA_P-wetherbeei_contig12947.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1240bp|location=Sequence derived from alignment at P-wetherbeei_contig12947:3..1242- (Phaeothamnion wetherbeei SAG_119_79)
GGCATGCACTGATTCTCCCTTCACTTAAAACCACACCAGCGGGGGGAGAT
CACACTCCCTCGTGCCTGCTCTCCTGCCCCCTGCCCCATCGCCAACCTAT
TACCTTGGCTTAGAAAAGCCAAACATGGTGAAGAAGAGGAGTCGATCAGC
AGAAAGGTGGGACGGGCTGCCGTGGAAGGCCGTCGACGTCGAGCTGGAGG
CTGATGACGGGCTTCACGAGGAATCCCCCGGCGAGGACGAGCGCTTCCTG
CTTTTTTCGCTGGAAGAAATCGACGGTGCTGCTTACGCGTACCAAAAGAA
TGAGAACGGAGCGGCGACTGTCACAGTGAGTCCACTTTGGAAGTGCTAGA
AGCGAAAATAATCAATCAATAGTCGAAAGCGTTTAGAAACGAAACAATCG
ACCATGACTGAGCATCGCGGAAGTTGCAAGTAATACCAGCCCGCCTCGCA
AGCTTTGAATTGCGAACGCGGCCCATCCCTGCGGCAAACATCGAACTGGG
GATGGGATAAACCGCGCCCGTGCTTGTTCGAACAAGGGACCAGGCGTCAA
AACCACTCCCGACATGCCTTTGAAGGCCAAAGCGTGAGAAAGAGTTATAA
TGGCTTTCCCAGTTGCGTACGCTCAGTCCTTTGAACCGCGCACTCTCCGG
CTCCTTTCAAGCAGGCAAAGCGTGCGAAGGACGTCAGCGATGCGGCCGAC
GAAGGCGAAATGGATGCTATGGAAGCAGAACCGTCCGTCGAGCGATCGCG
AACGCGGCGGAAGAAGCACAAGGCGCCCGAACTGTCGGCCGCGAGTGCTA
TTGACGGGGACACGGATGACGTCGCCGCTGAGTTTTCGGAAGAGTCGCGA
CATGGAGAGGCGGCGCCCCCCGCCGACGCTGGCACATCTACGGACTCTAT
GTCGGATTATGACGGCGGCGGTGCAGCTGCCCCTGATGGCGCAGCGGTTA
AGGGCCGCGCGCTTTCTCGCAGAGCGAGGAAGCGTGCGAAGCGAAGAGCA
GCGGCCGTCGCGCAAAATGCTGACCCTGACGGATCTGCTGGCGAGACCGC
CGAGGCCGCCGGCATTGTTGCGGCATCTGCTCCGGCGGCGGTAGGAGTGG
AAACGGCGGCGGCAATGTACAATAACGCCAGCGACGGCGACGGCGACGGC
GACGACGCCGATGCAGCTGTGGCAGTGCCCTCATCTCCGTCGTCCCAGTC
TCCGTGGGAGCTCAGCGAGGCCGACTCGGCCGCCATGATG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig12947:3..1242-

>mRNA_P-wetherbeei_contig12947.1.1 ID=mRNA_P-wetherbeei_contig12947.1.1|Name=mRNA_P-wetherbeei_contig12947.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=777bp|location=Sequence derived from alignment at P-wetherbeei_contig12947:3..1242- (Phaeothamnion wetherbeei SAG_119_79)
ATGGTGAAGAAGAGGAGTCGATCAGCAGAAAGGTGGGACGGGCTGCCGTG
GAAGGCCGTCGACGTCGAGCTGGAGGCTGATGACGGGCTTCACGAGGAAT
CCCCCGGCGAGGACGAGCGCTTCCTGCTTTTTTCGCTGGAAGAAATCGAC
GGTGCTGCTTACGCGTACCAAAAGAATGAGAACGGAGCGGCGACTGTCAC
AGCAAAGCGTGCGAAGGACGTCAGCGATGCGGCCGACGAAGGCGAAATGG
ATGCTATGGAAGCAGAACCGTCCGTCGAGCGATCGCGAACGCGGCGGAAG
AAGCACAAGGCGCCCGAACTGTCGGCCGCGAGTGCTATTGACGGGGACAC
GGATGACGTCGCCGCTGAGTTTTCGGAAGAGTCGCGACATGGAGAGGCGG
CGCCCCCCGCCGACGCTGGCACATCTACGGACTCTATGTCGGATTATGAC
GGCGGCGGTGCAGCTGCCCCTGATGGCGCAGCGGTTAAGGGCCGCGCGCT
TTCTCGCAGAGCGAGGAAGCGTGCGAAGCGAAGAGCAGCGGCCGTCGCGC
AAAATGCTGACCCTGACGGATCTGCTGGCGAGACCGCCGAGGCCGCCGGC
ATTGTTGCGGCATCTGCTCCGGCGGCGGTAGGAGTGGAAACGGCGGCGGC
AATGTACAATAACGCCAGCGACGGCGACGGCGACGGCGACGACGCCGATG
CAGCTGTGGCAGTGCCCTCATCTCCGTCGTCCCAGTCTCCGTGGGAGCTC
AGCGAGGCCGACTCGGCCGCCATGATG
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