mRNA_P-wetherbeei_contig10228.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig10228.2.1
Unique NamemRNA_P-wetherbeei_contig10228.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig10228.2.1 vs. uniprot
Match: D8LC61_ECTSI (Putative copper transporter n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LC61_ECTSI)

HSP 1 Score: 77.0 bits (188), Expect = 3.040e-12
Identity = 45/93 (48.39%), Postives = 58/93 (62.37%), Query Frame = 2 
Query:  416 QVSPKMEVRPQTLVRCLDEIGFMSAFISSSTT-EMLGPGDDSSAVWAIAAALGLVDRGCAMAWGGECSCDPSNCRCVNCTIHVSEAASAVNEV 691
            +V  K  V    L   LD IGF S+ ++++TT E     D  +AVWAIA ALGLVD GCAMAWG  CSC   +CRC+NC  H+ + + AV+ V
Sbjct:  721 KVDAKANVTLGDLTSALDAIGFGSSCVATTTTQEPTLEQDGVNAVWAIANALGLVDPGCAMAWGRPCSCG-DDCRCINCPQHMKKVSHAVDLV 812
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig10228.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LC61_ECTSI3.040e-1248.39Putative copper transporter n=1 Tax=Ectocarpus sil... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig10228contigP-wetherbeei_contig10228:813..1935 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D8LC61
PFAMsHMA
Model size813
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons2
Evalue3.8e-14
EggNOG OGs28KZG@1|root,2QT78@2759|Eukaryota
Ec32 ortholog descriptionEsV-1-7 domain protein, putative copper transporter
Ec32 orthologEc-20_004580.1
Cds size381
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185860.0727038-CDS-P-wetherbeei_contig10228:812..10531683185860.0727038-CDS-P-wetherbeei_contig10228:812..1053Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig10228 813..1053 -
1683185860.0815325-CDS-P-wetherbeei_contig10228:1365..15051683185860.0815325-CDS-P-wetherbeei_contig10228:1365..1505Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig10228 1366..1505 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185860.0894375-UTR-P-wetherbeei_contig10228:1505..19351683185860.0894375-UTR-P-wetherbeei_contig10228:1505..1935Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig10228 1506..1935 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig10228.2.1prot_P-wetherbeei_contig10228.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig10228 813..1505 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig10228.2.1

>prot_P-wetherbeei_contig10228.2.1 ID=prot_P-wetherbeei_contig10228.2.1|Name=mRNA_P-wetherbeei_contig10228.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=127bp
MEVRPQTLVRCLDEIGFMSAFISSSTTEMLGPGDDSSAVWAIAAALGLVD
RGCAMAWGGECSCDPSNCRCVNCTIHVSEAASAVNEVCSHLEEWDKDETG
SASGGGGSGGGGSGGGCGCAGDAAAQG
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mRNA from alignment at P-wetherbeei_contig10228:813..1935-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig10228.2.1 ID=mRNA_P-wetherbeei_contig10228.2.1|Name=mRNA_P-wetherbeei_contig10228.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1123bp|location=Sequence derived from alignment at P-wetherbeei_contig10228:813..1935- (Phaeothamnion wetherbeei SAG_119_79)
GCATGACGGTGCAGCAGGCCCTCAGCGCCATCCCTGGCGTCCTCGACGTC
ACTGTCCACTTCCCCACGCGCACCGTCTCCGTCAAGGTGCGTGTCTGCCA
TTGGCAGGCATTGAGCAGGCACTGTCCCCCGAAACTGTGTTTCTCTCCCT
TTGACAGGGCCGTCGCCACGGGTATGACACGTCTTCGTTGCTGTTATTTT
CCGCTATTCCGCCAAAGGTCGGCGGGAAACGCTGAGGTAGCGCTGGCTTC
ATTGAAGAAGCGCTGTTGTGCATGAACTAGAAATCCTTTTCGGCCGGTTG
TTCCATAGGCCCCGTCCACCCATTCAACCCCGCTGCCTCACCATGCCAGC
CGTCGATTAACCTTTCGACCGTTTCGGAACCGCGCGCTTTGCGCGTTTCT
CCGGGGGGGAACGCGCAGGTTTCGCCGAAGATGGAGGTGCGGCCGCAGAC
GCTGGTGCGGTGTCTGGACGAGATCGGCTTCATGAGTGCCTTCATCTCTA
GCAGCACCACGGAGATGCTCGGGCCCGGGGACGACTCCAGCGCCGTCTGG
GCCATCGCTGCCGCCCTCGGGTCAGTTTTTTCGTTGTCTGGGTTACTCCT
GACGGGTGGGGCCGTTGTAGTTTTCTCTCTCTGTTTTTGTCCCGATCTGC
AGCGGGGTAGCGAAAGTGACACCTTCGAGTATACGCAAATCTTGTGCGGC
GCAGCATCCCCCTGGTGACCTCTGCCTCCTTCCAGCTTGTTTTTGACTCC
GGTCAGCTCGCTGTCTTTTCCGTTGTTTGCCTATTCATCTGGTTCCCAAT
AGCTTATCTATTTGCTTATTTCCGTCCTCGCACCCCAATGACACACCGAC
GTGGATTCTCTGCGGTGACTGCGCTGCGGCAGGCTGGTGGACCGCGGCTG
CGCCATGGCGTGGGGCGGCGAGTGCTCCTGCGACCCCAGCAACTGCCGCT
GCGTCAACTGCACCATCCACGTCTCCGAGGCCGCCAGCGCCGTCAACGAG
GTCTGCTCGCACCTCGAGGAGTGGGACAAAGACGAGACCGGCAGCGCGAG
TGGTGGCGGCGGCAGCGGCGGCGGCGGCAGCGGCGGCGGTTGCGGCTGCG
CAGGCGACGCGGCAGCACAGGGG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig10228:813..1935-

>mRNA_P-wetherbeei_contig10228.2.1 ID=mRNA_P-wetherbeei_contig10228.2.1|Name=mRNA_P-wetherbeei_contig10228.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=381bp|location=Sequence derived from alignment at P-wetherbeei_contig10228:813..1935- (Phaeothamnion wetherbeei SAG_119_79)
ATGGAGGTGCGGCCGCAGACGCTGGTGCGGTGTCTGGACGAGATCGGCTT
CATGAGTGCCTTCATCTCTAGCAGCACCACGGAGATGCTCGGGCCCGGGG
ACGACTCCAGCGCCGTCTGGGCCATCGCTGCCGCCCTCGGGCTGGTGGAC
CGCGGCTGCGCCATGGCGTGGGGCGGCGAGTGCTCCTGCGACCCCAGCAA
CTGCCGCTGCGTCAACTGCACCATCCACGTCTCCGAGGCCGCCAGCGCCG
TCAACGAGGTCTGCTCGCACCTCGAGGAGTGGGACAAAGACGAGACCGGC
AGCGCGAGTGGTGGCGGCGGCAGCGGCGGCGGCGGCAGCGGCGGCGGTTG
CGGCTGCGCAGGCGACGCGGCAGCACAGGGG
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