mRNA_P-wetherbeei_contig8097.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig8097.2.1
Unique NamemRNA_P-wetherbeei_contig8097.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig8097.2.1 vs. uniprot
Match: D7G7R7_ECTSI (Palmitoyltransferase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G7R7_ECTSI)

HSP 1 Score: 82.4 bits (202), Expect = 4.540e-15
Identity = 43/95 (45.26%), Postives = 56/95 (58.95%), Query Frame = 3 
Query:   36 GFWQRFGCVFGESRWVGCMMCLAMYELLWSTALLLSHLKLVLCDQTTYEAIKNRRWVDHVHAAKPAPLRWFANAAAFF--RGRNGXXXXGAYAPV 314
            G W  + CVFG S+++GC   LA Y  +W   LLL+HL++VL + TTYE+IK RRWVD+    KP  +R+  N   FF   GR      GAY  V
Sbjct:  470 GEWAMWRCVFGHSKFLGCTAILAAYHDVWIGLLLLTHLRMVLINMTTYESIKGRRWVDNTTHGKPFYVRYPTNCFRFFFRPGRESGRMAGAYGRV 564
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig8097.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G7R7_ECTSI4.540e-1545.26Palmitoyltransferase n=2 Tax=Ectocarpus TaxID=2879... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig8097contigP-wetherbeei_contig8097:1626..2168 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7G7R7
Preferred nameZDHHC13
PFAMsAnk_2,Ank_3,Ank_4,Ank_5,DHHC
Model size543
Max annot lvl2759|Eukaryota
KEGG koko:K20032
KEGG TC9.B.37.1,9.B.37.3
Hectar predicted targeting categorysignal peptide
GOsGO:0000003,GO:0000139,GO:0001505,GO:0002791,GO:0002793,GO:0003674,GO:0003824,GO:0005215,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0005794,GO:0005798,GO:0006464,GO:0006497,GO:0006807,GO:0006810,GO:0006811,GO:0006812,GO:0006836,GO:0006887,GO:0007154,GO:0007267,GO:0007268,GO:0007269,GO:0007276,GO:0007283,GO:0008021,GO:0008104,GO:0008150,GO:0008152,GO:0008324,GO:0009058,GO:0009059,GO:0009987,GO:0012505,GO:0015031,GO:0015075,GO:0015095,GO:0015318,GO:0015693,GO:0015833,GO:0016020,GO:0016079,GO:0016192,GO:0016234,GO:0016235,GO:0016409,GO:0016417,GO:0016740,GO:0016746,GO:0016747,GO:0017156,GO:0018345,GO:0019538,GO:0019706,GO:0019707,GO:0019953,GO:0022414,GO:0022857,GO:0022890,GO:0023052,GO:0023061,GO:0030001,GO:0030133,GO:0030660,GO:0031090,GO:0031410,GO:0031982,GO:0031984,GO:0032501,GO:0032504,GO:0032879,GO:0032880,GO:0032940,GO:0033036,GO:0034220,GO:0034645,GO:0036211,GO:0042157,GO:0042158,GO:0042802,GO:0042886,GO:0042953,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0043543,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044431,GO:0044433,GO:0044444,GO:0044446,GO:0044456,GO:0044464,GO:0044703,GO:0044872,GO:0045055,GO:0045184,GO:0045202,GO:0046873,GO:0046903,GO:0046907,GO:0048232,GO:0048489,GO:0048518,GO:0048522,GO:0048609,GO:0050708,GO:0050714,GO:0050789,GO:0050794,GO:0051046,GO:0051047,GO:0051049,GO:0051050,GO:0051179,GO:0051222,GO:0051223,GO:0051234,GO:0051640,GO:0051641,GO:0051648,GO:0051649,GO:0051650,GO:0051656,GO:0051704,GO:0055085,GO:0065007,GO:0065008,GO:0070201,GO:0070382,GO:0070838,GO:0071702,GO:0071704,GO:0071705,GO:0072511,GO:0090087,GO:0097458,GO:0097479,GO:0097480,GO:0097708,GO:0098588,GO:0098655,GO:0098660,GO:0098662,GO:0098791,GO:0098793,GO:0098805,GO:0098916,GO:0099003,GO:0099503,GO:0099504,GO:0099536,GO:0099537,GO:0099643,GO:0140096,GO:1901564,GO:1901566,GO:1901576,GO:1903530,GO:1903532,GO:1903830,GO:1904951
Exons1
Evalue1.07e-08
EggNOG OGsCOG5273@1|root,KOG0509@2759|Eukaryota
EC2.3.1.225
Descriptionprotein-cysteine S-palmitoyltransferase activity
Cds size369
COG categoryZ
BRITEko00000,ko01000,ko04131
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187019.8578923-UTR-P-wetherbeei_contig8097:1625..17141683187019.8578923-UTR-P-wetherbeei_contig8097:1625..1714Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig8097 1626..1714 +
1683187019.8873134-UTR-P-wetherbeei_contig8097:2083..21681683187019.8873134-UTR-P-wetherbeei_contig8097:2083..2168Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig8097 2084..2168 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187019.8741887-CDS-P-wetherbeei_contig8097:1714..20831683187019.8741887-CDS-P-wetherbeei_contig8097:1714..2083Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig8097 1715..2083 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig8097.2.1prot_P-wetherbeei_contig8097.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig8097 1715..2083 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig8097.2.1

>prot_P-wetherbeei_contig8097.2.1 ID=prot_P-wetherbeei_contig8097.2.1|Name=mRNA_P-wetherbeei_contig8097.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=123bp
MMCLAMYELLWSTALLLSHLKLVLCDQTTYEAIKNRRWVDHVHAAKPAPL
RWFANAAAFFRGRNGGGGGGAYAPVTPRVQRQGCNHDHGGGNCRGNGGGH
DGSHAGCDGPPDGGGLNGARFV*
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mRNA from alignment at P-wetherbeei_contig8097:1626..2168+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig8097.2.1 ID=mRNA_P-wetherbeei_contig8097.2.1|Name=mRNA_P-wetherbeei_contig8097.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=543bp|location=Sequence derived from alignment at P-wetherbeei_contig8097:1626..2168+ (Phaeothamnion wetherbeei SAG_119_79)
CCGCCGCCGCTATCAATTTGGAAATAGACGGCGCAGGTTTCTGGCAGCGG
TTCGGCTGCGTCTTTGGTGAGTCGCGGTGGGTGGGCTGCATGATGTGCCT
GGCCATGTACGAGCTGCTATGGTCGACGGCGTTGCTGCTGTCGCACCTAA
AGCTGGTGCTCTGTGACCAGACGACGTACGAGGCGATTAAGAACCGGCGG
TGGGTAGATCATGTGCACGCTGCAAAGCCCGCACCACTGCGCTGGTTTGC
CAACGCGGCTGCCTTCTTCCGCGGACGCAACGGCGGCGGCGGCGGCGGCG
CCTACGCGCCGGTGACGCCGCGGGTACAGCGGCAGGGCTGCAACCACGAT
CACGGCGGTGGCAATTGCCGTGGCAACGGCGGCGGCCATGATGGCAGCCA
CGCCGGCTGCGACGGTCCGCCGGACGGCGGCGGCCTGAACGGCGCCCGCT
TTGTATAGCACGCTTAGCACGCTGGTCCTTGGCAAGATTTATAAAAGAGA
GAGAAGTGTTCTCCGTTTGAAACAAGGAGGGCCTTCTGGCCCC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig8097:1626..2168+

>mRNA_P-wetherbeei_contig8097.2.1 ID=mRNA_P-wetherbeei_contig8097.2.1|Name=mRNA_P-wetherbeei_contig8097.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=369bp|location=Sequence derived from alignment at P-wetherbeei_contig8097:1626..2168+ (Phaeothamnion wetherbeei SAG_119_79)
ATGATGTGCCTGGCCATGTACGAGCTGCTATGGTCGACGGCGTTGCTGCT
GTCGCACCTAAAGCTGGTGCTCTGTGACCAGACGACGTACGAGGCGATTA
AGAACCGGCGGTGGGTAGATCATGTGCACGCTGCAAAGCCCGCACCACTG
CGCTGGTTTGCCAACGCGGCTGCCTTCTTCCGCGGACGCAACGGCGGCGG
CGGCGGCGGCGCCTACGCGCCGGTGACGCCGCGGGTACAGCGGCAGGGCT
GCAACCACGATCACGGCGGTGGCAATTGCCGTGGCAACGGCGGCGGCCAT
GATGGCAGCCACGCCGGCTGCGACGGTCCGCCGGACGGCGGCGGCCTGAA
CGGCGCCCGCTTTGTATAG
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